Wall clock time and date at job start Sat Apr 11 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41380 * 126.80307 * 2 1 4 4 C 1.35449 * 103.98667 * 179.97438 * 3 2 1 5 5 C 1.50695 * 126.77625 * 179.97438 * 4 3 2 6 6 O 1.42898 * 109.47194 * 90.00897 * 5 4 3 7 7 C 1.42902 * 114.00244 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46818 * 179.97438 * 7 6 5 9 9 O 1.21272 * 120.00342 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99701 * 179.97438 * 8 7 6 11 11 C 1.46493 * 120.00095 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.44962 * 324.96628 * 11 10 8 13 13 C 1.53036 * 109.46312 * 84.93225 * 11 10 8 14 14 C 1.53188 * 109.31939 * 181.38766 * 13 11 10 15 15 N 1.46961 * 108.88586 * 305.44500 * 14 13 11 16 16 C 1.36940 * 120.65216 * 233.53333 * 15 14 13 17 17 H 1.08000 * 119.99735 * 151.72458 * 16 15 14 18 18 C 1.38810 * 120.00075 * 331.72500 * 16 15 14 19 19 N 1.31619 * 119.99689 * 343.18463 * 18 16 15 20 20 Si 1.86795 * 119.99988 * 163.18630 * 18 16 15 21 21 H 1.48509 * 109.47304 * 59.99932 * 20 18 16 22 22 H 1.48501 * 109.47440 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47535 * 299.99868 * 20 18 16 24 24 C 1.46925 * 118.71816 * 53.34938 * 15 14 13 25 25 C 1.53042 * 109.46247 * 204.99682 * 11 10 8 26 26 H 1.08996 * 109.49651 * 298.57058 * 25 11 10 27 27 O 1.42904 * 109.49173 * 58.66313 * 25 11 10 28 28 O 1.34044 * 106.44732 * 0.24795 * 4 3 2 29 29 N 1.20923 * 111.56597 * 359.55785 * 28 4 3 30 30 H 1.09002 * 109.47077 * 89.99713 * 1 2 3 31 31 H 1.09000 * 109.47236 * 210.00062 * 1 2 3 32 32 H 1.08994 * 109.47145 * 329.99704 * 1 2 3 33 33 H 1.08000 * 128.00666 * 359.96796 * 3 2 1 34 34 H 1.08998 * 109.47468 * 330.00921 * 5 4 3 35 35 H 1.09001 * 109.47164 * 210.00845 * 5 4 3 36 36 H 1.08992 * 109.46893 * 59.99761 * 7 6 5 37 37 H 1.08996 * 109.47169 * 299.99903 * 7 6 5 38 38 H 0.97007 * 119.99633 * 359.97438 * 10 8 7 39 39 H 1.09004 * 109.49872 * 301.33767 * 13 11 10 40 40 H 1.09001 * 109.50043 * 61.42987 * 13 11 10 41 41 H 1.09007 * 109.58660 * 65.14738 * 14 13 11 42 42 H 1.08995 * 109.59426 * 185.57794 * 14 13 11 43 43 H 0.97000 * 119.99637 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.59109 * 186.78530 * 24 15 14 45 45 H 1.08999 * 109.58340 * 66.50458 * 24 15 14 46 46 H 0.96705 * 113.99478 * 179.83921 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6025 0.6068 0.0006 5 6 4.9021 1.3695 0.0003 6 8 5.3128 1.6114 1.3475 7 6 6.5417 2.3319 1.4601 8 6 6.8762 2.5300 2.9161 9 8 6.1356 2.0963 3.7729 10 7 7.9991 3.1881 3.2660 11 6 8.3247 3.3801 4.6814 12 1 7.4054 3.5260 5.2487 13 6 9.0583 2.1446 5.2081 14 6 9.3664 2.3344 6.6966 15 7 10.1022 3.5942 6.8732 16 6 11.2998 3.6161 7.5369 17 1 12.0375 4.3669 7.2951 18 6 11.5656 2.6732 8.5204 19 7 10.5807 1.9789 9.0497 20 14 13.3211 2.3900 9.0926 21 1 13.8704 3.6529 9.6484 22 1 13.3362 1.3399 10.1425 23 1 14.1523 1.9526 7.9424 24 6 9.5300 4.8294 6.3204 25 6 9.2202 4.6116 4.8361 26 1 10.1501 4.4562 4.2892 27 8 8.5464 5.7595 4.3161 28 8 3.4538 -0.7254 -0.0047 29 7 2.2868 -1.0424 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 2.0710 2.1743 -0.0005 34 1 4.7651 2.3207 -0.5140 35 1 5.6660 0.7856 -0.5131 36 1 6.4391 3.3030 0.9759 37 1 7.3394 1.7676 0.9771 38 1 8.5921 3.5340 2.5806 39 1 8.4292 1.2642 5.0762 40 1 9.9898 2.0124 4.6577 41 1 8.4343 2.3761 7.2603 42 1 9.9744 1.5029 7.0529 43 1 10.7665 1.3203 9.7372 44 1 10.2460 5.6441 6.4285 45 1 8.6118 5.0770 6.8530 46 1 9.0558 6.5787 4.3837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001099889727.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:55 Heat of formation + Delta-G solvation = -69.594504 kcal Electronic energy + Delta-G solvation = -29042.270140 eV Core-core repulsion = 24742.342510 eV Total energy + Delta-G solvation = -4299.927630 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.96224 -41.13039 -39.64090 -38.55900 -36.95528 -35.78995 -35.73161 -33.86263 -33.63574 -31.91676 -30.38916 -29.62071 -29.23575 -27.37297 -26.47160 -24.12026 -24.05489 -23.54887 -21.64484 -21.28921 -21.06429 -19.02584 -18.84215 -18.58209 -18.03148 -17.85137 -17.77160 -17.26161 -16.90897 -16.59325 -16.09623 -15.69010 -15.66282 -15.46584 -14.96602 -14.91960 -14.45942 -14.40554 -14.21256 -14.01175 -13.88036 -13.64601 -13.56852 -13.28125 -13.19447 -12.97641 -12.77345 -12.67567 -12.38406 -12.15970 -12.13926 -12.06034 -11.88558 -11.38155 -11.07369 -11.00386 -10.84400 -10.78654 -10.56445 -10.53889 -10.02917 -8.76141 -7.90058 -5.38252 0.27677 1.17335 1.48856 1.51375 1.58299 1.64055 1.81088 2.13999 2.49595 3.07274 3.14956 3.24352 3.27621 3.50756 3.63287 3.76760 3.90147 3.99971 4.07073 4.13083 4.23348 4.27231 4.29504 4.38706 4.40373 4.45148 4.53868 4.58526 4.67237 4.70457 4.84886 4.87175 4.88560 4.96131 5.03270 5.13537 5.21629 5.37109 5.48692 5.60108 5.65388 5.93716 6.33888 6.62835 6.91521 7.09569 7.21352 7.32329 7.78117 8.31083 9.17246 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020882 B = 0.001940 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1340.516129 B =14433.150406 C =15099.895081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.004 3.996 3 C -0.209 4.209 4 C -0.041 4.041 5 C 0.141 3.859 6 O -0.399 6.399 7 C 0.055 3.945 8 C 0.502 3.498 9 O -0.584 6.584 10 N -0.698 5.698 11 C 0.171 3.829 12 H 0.050 0.950 13 C -0.129 4.129 14 C 0.179 3.821 15 N -0.603 5.603 16 C -0.265 4.265 17 H 0.079 0.921 18 C -0.053 4.053 19 N -0.938 5.938 20 Si 0.972 3.028 21 H -0.272 1.272 22 H -0.300 1.300 23 H -0.273 1.273 24 C 0.116 3.884 25 C 0.105 3.895 26 H 0.079 0.921 27 O -0.569 6.569 28 O 0.082 5.918 29 N -0.398 5.398 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.202 0.798 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.418 0.582 39 H 0.053 0.947 40 H 0.074 0.926 41 H -0.013 1.013 42 H 0.062 0.938 43 H 0.250 0.750 44 H 0.077 0.923 45 H 0.008 0.992 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 5.196 -26.017 28.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.155 4.155 3 C -0.230 4.230 4 C -0.105 4.105 5 C 0.064 3.936 6 O -0.318 6.318 7 C -0.024 4.024 8 C 0.289 3.711 9 O -0.463 6.463 10 N -0.351 5.351 11 C 0.066 3.934 12 H 0.068 0.932 13 C -0.169 4.169 14 C 0.052 3.948 15 N -0.327 5.327 16 C -0.395 4.395 17 H 0.097 0.903 18 C -0.248 4.248 19 N -0.584 5.584 20 Si 0.800 3.200 21 H -0.198 1.198 22 H -0.226 1.226 23 H -0.199 1.199 24 C -0.011 4.011 25 C 0.044 3.956 26 H 0.097 0.903 27 O -0.377 6.377 28 O 0.017 5.983 29 N -0.106 5.106 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.219 0.781 34 H 0.145 0.855 35 H 0.119 0.881 36 H 0.144 0.856 37 H 0.138 0.862 38 H 0.256 0.744 39 H 0.071 0.929 40 H 0.093 0.907 41 H 0.005 0.995 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.096 0.904 45 H 0.026 0.974 46 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.536 2.992 -25.260 27.930 hybrid contribution 1.257 0.732 0.976 1.752 sum -10.279 3.725 -24.283 26.631 Atomic orbital electron populations 1.20340 0.83546 1.04713 1.04713 1.24340 1.00809 0.88702 1.01616 1.22932 0.90529 1.02379 1.07128 1.24606 0.99113 0.83291 1.03473 1.21015 0.89250 0.99361 0.83942 1.88041 1.40109 1.76956 1.26734 1.22366 0.88142 1.00260 0.91630 1.21155 0.80537 0.77239 0.92184 1.90742 1.51063 1.50577 1.53930 1.45677 1.24304 1.57198 1.07944 1.20586 0.97052 0.93745 0.82051 0.93201 1.22310 0.99829 0.96729 0.98054 1.20546 0.93459 0.89768 0.90993 1.44232 1.22246 1.02119 1.64138 1.19547 0.92013 1.15098 1.12828 0.90336 1.25930 1.01169 1.01006 0.96727 1.70209 1.31819 1.27856 1.28505 0.85270 0.79914 0.77416 0.77397 1.19785 1.22637 1.19905 1.21718 0.96744 0.89996 0.92648 1.22267 0.93960 0.84946 0.94447 0.90292 1.86448 1.48266 1.19104 1.83859 1.84776 1.21641 1.23993 1.67854 1.73859 0.89849 1.25754 1.21185 0.88311 0.90925 0.87996 0.78076 0.85450 0.88145 0.85636 0.86165 0.74404 0.92852 0.90695 0.99497 0.92005 0.94087 0.90449 0.97387 0.75308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.47 71.24 0.75 -0.17 16 2 C 0.00 0.07 7.33 43.58 0.32 0.39 16 3 C -0.21 -3.54 11.06 22.40 0.25 -3.29 16 4 C -0.04 -0.79 7.12 25.04 0.18 -0.61 16 5 C 0.14 1.73 6.50 71.23 0.46 2.19 16 6 O -0.40 -8.72 9.86 -129.94 -1.28 -10.00 16 7 C 0.05 0.85 6.42 71.24 0.46 1.31 16 8 C 0.50 14.20 7.87 87.66 0.69 14.89 16 9 O -0.58 -24.29 16.16 16.03 0.26 -24.03 16 10 N -0.70 -17.69 4.92 -442.42 -2.18 -19.86 16 11 C 0.17 5.89 2.12 45.02 0.10 5.99 16 12 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 13 C -0.13 -5.07 5.65 30.67 0.17 -4.89 16 14 C 0.18 8.93 5.30 86.35 0.46 9.38 16 15 N -0.60 -29.45 3.00 -699.02 -2.10 -31.55 16 16 C -0.27 -13.97 9.58 84.03 0.81 -13.16 16 17 H 0.08 3.87 7.88 -2.91 -0.02 3.85 16 18 C -0.05 -2.90 4.92 84.86 0.42 -2.49 16 19 N -0.94 -56.04 11.20 21.65 0.24 -55.79 16 20 Si 0.97 43.75 29.59 68.60 2.03 45.78 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 23 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 24 C 0.12 4.50 6.14 86.36 0.53 5.03 16 25 C 0.10 3.17 3.15 30.67 0.10 3.26 16 26 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 27 O -0.57 -14.04 13.16 -148.98 -1.96 -16.00 16 28 O 0.08 2.06 11.20 71.59 0.80 2.86 16 29 N -0.40 -10.39 12.07 -49.54 -0.60 -10.99 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.20 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.42 6.94 8.60 -92.70 -0.80 6.14 16 39 H 0.05 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 41 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 42 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 43 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.08 2.72 7.93 -2.39 -0.02 2.70 16 45 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 46 H 0.40 6.11 9.08 -74.05 -0.67 5.43 16 Total: -1.00 -85.69 387.31 0.45 -85.25 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: -0.45 Total: 16.49 kcal Atomic # 6 Polarization: 12.16 SS G_CDS: 5.68 Total: 17.84 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -4.63 Total: -118.19 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -2.18 Total: -47.17 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -85.69 0.45 -85.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099889727.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.653 kcal (2) G-P(sol) polarization free energy of solvation -85.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds