Wall clock time and date at job start Sat Apr 11 2020 05:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34332 * 126.44286 * 2 1 4 4 N 1.34484 * 107.66776 * 179.76680 * 3 2 1 5 5 C 1.30257 * 108.69814 * 0.42183 * 4 3 2 6 6 C 1.50697 * 125.61633 * 179.83888 * 5 4 3 7 7 O 1.42907 * 109.47273 * 89.69142 * 6 5 4 8 8 C 1.42893 * 113.99900 * 179.97438 * 7 6 5 9 9 C 1.50704 * 109.46866 * 180.02562 * 8 7 6 10 10 O 1.21284 * 119.99958 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00185 * 180.02562 * 9 8 7 12 12 C 1.46497 * 119.99798 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.44701 * 325.02792 * 12 11 9 14 14 C 1.53037 * 109.46035 * 84.99909 * 12 11 9 15 15 C 1.53199 * 109.31127 * 181.38357 * 14 12 11 16 16 N 1.46931 * 108.77262 * 305.36033 * 15 14 12 17 17 C 1.36928 * 120.63137 * 233.62818 * 16 15 14 18 18 H 1.08007 * 120.00254 * 151.82809 * 17 16 15 19 19 C 1.38816 * 120.00134 * 331.83335 * 17 16 15 20 20 N 1.31621 * 119.99800 * 343.06552 * 19 17 16 21 21 Si 1.86803 * 120.00007 * 163.06777 * 19 17 16 22 22 H 1.48500 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.46910 * 119.99808 * 21 19 17 24 24 H 1.48498 * 109.46945 * 239.99543 * 21 19 17 25 25 C 1.46922 * 118.73599 * 53.61334 * 16 15 14 26 26 C 1.53047 * 109.45440 * 205.06211 * 12 11 9 27 27 H 1.08997 * 109.50012 * 298.56679 * 26 12 11 28 28 O 1.42899 * 109.49643 * 58.66659 * 26 12 11 29 29 O 1.33965 * 108.76479 * 359.57726 * 5 4 3 30 30 H 1.09004 * 109.47129 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47446 * 300.00229 * 1 2 3 32 32 H 1.08997 * 109.46902 * 60.00344 * 1 2 3 33 33 H 1.07992 * 126.16585 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47396 * 329.69293 * 6 5 4 35 35 H 1.09003 * 109.47411 * 209.69011 * 6 5 4 36 36 H 1.08996 * 109.47256 * 60.00551 * 8 7 6 37 37 H 1.09000 * 109.47483 * 299.99615 * 8 7 6 38 38 H 0.97002 * 119.99744 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.49683 * 301.33101 * 14 12 11 40 40 H 1.08996 * 109.50134 * 61.42990 * 14 12 11 41 41 H 1.08998 * 109.58744 * 65.14668 * 15 14 12 42 42 H 1.09002 * 109.58437 * 185.57843 * 15 14 12 43 43 H 0.96999 * 119.99400 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.59191 * 66.17405 * 25 16 15 45 45 H 1.08999 * 109.58810 * 186.46165 * 25 16 15 46 46 H 0.96698 * 114.00227 * 179.97438 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5765 -0.6548 -0.0007 6 6 4.8004 -1.5340 -0.0013 7 8 5.1877 -1.8122 1.3459 8 6 6.3443 -2.6437 1.4581 9 6 6.6600 -2.8712 2.9141 10 8 5.9634 -2.3700 3.7711 11 7 7.7172 -3.6307 3.2638 12 6 8.0236 -3.8522 4.6791 13 1 7.7822 -2.9541 5.2476 14 6 7.1931 -5.0260 5.2030 15 6 7.4905 -5.2326 6.6916 16 7 8.9405 -5.3939 6.8662 17 6 9.4470 -6.4816 7.5259 18 1 10.4331 -6.8494 7.2833 19 6 8.6932 -7.1116 8.5065 20 7 7.6594 -6.4954 9.0393 21 14 9.1460 -8.8341 9.0701 22 1 10.3395 -9.3023 8.3208 23 1 9.4494 -8.8155 10.5237 24 1 8.0087 -9.7538 8.8135 25 6 9.8365 -4.3660 6.3190 26 6 9.5128 -4.1692 4.8347 27 1 9.7499 -5.0810 4.2865 28 8 10.2876 -3.0857 4.3172 29 8 2.3075 -1.0840 -0.0005 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.9822 2.1112 0.0004 34 1 5.6146 -1.0231 -0.5152 35 1 4.5761 -2.4687 -0.5152 36 1 7.1907 -2.1562 0.9744 37 1 6.1516 -3.6015 0.9747 38 1 8.2745 -4.0312 2.5783 39 1 6.1331 -4.8094 5.0705 40 1 7.4520 -5.9297 4.6514 41 1 7.1487 -4.3652 7.2563 42 1 6.9781 -6.1271 7.0458 43 1 7.1329 -6.9355 9.7248 44 1 9.6860 -3.4280 6.8533 45 1 10.8721 -4.6875 6.4297 46 1 11.2431 -3.2185 4.3836 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099914283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:27 Heat of formation + Delta-G solvation = -76.514989 kcal Electronic energy + Delta-G solvation = -29035.268935 eV Core-core repulsion = 24735.041211 eV Total energy + Delta-G solvation = -4300.227725 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.62127 -39.88675 -38.42753 -37.45181 -35.41966 -35.02373 -34.30284 -33.09369 -32.02546 -30.46053 -29.71330 -28.68000 -27.40631 -25.50131 -24.84924 -22.62094 -22.44426 -21.90032 -21.41036 -20.33952 -19.52718 -17.84087 -17.55563 -17.18831 -16.77745 -16.66082 -16.45443 -16.35906 -15.53672 -15.11198 -14.86741 -14.81291 -14.28572 -13.99521 -13.89834 -13.70561 -13.51571 -13.38952 -13.19672 -12.84780 -12.76389 -12.55546 -12.27077 -12.22264 -11.97972 -11.60045 -11.58227 -11.12349 -10.90564 -10.82845 -10.68090 -10.33664 -10.26694 -10.16317 -9.96846 -9.80450 -9.72235 -9.41703 -9.03813 -8.77596 -8.47233 -6.78143 -5.86074 -3.30771 1.00141 2.10395 2.36922 2.77824 2.95669 3.32979 3.40670 3.42701 3.59701 4.11648 4.35300 4.37295 4.49750 4.59339 4.63541 4.71466 4.82578 4.90548 4.96015 4.98200 5.06595 5.18583 5.27913 5.31478 5.46865 5.51902 5.53872 5.72271 5.75894 5.95585 5.96532 6.09938 6.29338 6.46818 6.49315 6.55093 6.66426 6.76579 6.86030 7.27926 7.41456 7.59743 7.69757 7.71991 7.90215 8.36496 8.42233 9.11826 9.74183 10.30283 11.22481 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.001981 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.889353 B =14131.703484 C =15064.710095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.039 4.039 3 C -0.045 4.045 4 N -0.458 5.458 5 C 0.188 3.812 6 C 0.161 3.839 7 O -0.355 6.355 8 C 0.046 3.954 9 C 0.511 3.489 10 O -0.518 6.518 11 N -0.714 5.714 12 C 0.165 3.835 13 H 0.088 0.912 14 C -0.147 4.147 15 C 0.171 3.829 16 N -0.588 5.588 17 C -0.259 4.259 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.898 5.898 21 Si 0.904 3.096 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.288 1.288 25 C 0.120 3.880 26 C 0.081 3.919 27 H 0.057 0.943 28 O -0.571 6.571 29 O -0.194 6.194 30 H 0.079 0.921 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.186 0.814 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.396 0.604 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.024 0.976 42 H 0.093 0.907 43 H 0.255 0.745 44 H 0.029 0.971 45 H 0.060 0.940 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.989 9.047 -22.719 25.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.093 4.093 3 C -0.185 4.185 4 N -0.189 5.189 5 C -0.019 4.019 6 C 0.083 3.917 7 O -0.273 6.273 8 C -0.033 4.033 9 C 0.295 3.705 10 O -0.393 6.393 11 N -0.366 5.366 12 C 0.061 3.939 13 H 0.106 0.894 14 C -0.187 4.187 15 C 0.045 3.955 16 N -0.312 5.312 17 C -0.389 4.389 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.542 5.542 21 Si 0.734 3.266 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.215 1.215 25 C -0.007 4.007 26 C 0.020 3.980 27 H 0.075 0.925 28 O -0.375 6.375 29 O -0.080 6.080 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.203 0.797 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.230 0.770 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.043 0.957 42 H 0.111 0.889 43 H 0.065 0.935 44 H 0.047 0.953 45 H 0.079 0.921 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -7.755 9.972 -21.887 25.271 hybrid contribution 0.503 -1.715 -0.034 1.787 sum -7.253 8.257 -21.921 24.522 Atomic orbital electron populations 1.20318 0.83732 1.04582 1.04036 1.23587 0.95209 0.84522 1.05938 1.23111 0.87593 1.00555 1.07209 1.70420 1.23308 1.09058 1.16066 1.25516 0.83886 0.89943 1.02530 1.20475 0.89046 0.96386 0.85758 1.88097 1.45702 1.69776 1.23700 1.22289 0.89293 0.95763 0.95999 1.20022 0.81299 0.79174 0.89976 1.90763 1.48685 1.48360 1.51492 1.45954 1.29675 1.51753 1.09237 1.21021 0.92697 1.00074 0.80111 0.89360 1.22611 0.98709 0.96236 1.01165 1.20839 0.84541 1.01675 0.88490 1.44048 1.00940 1.21978 1.64229 1.19191 1.02293 1.03807 1.13576 0.91493 1.25099 0.98857 0.99420 0.96103 1.70046 1.20487 1.36022 1.27620 0.86205 0.77839 0.84407 0.78169 1.20226 1.21635 1.21463 1.21529 0.95300 0.93377 0.90528 1.22774 0.90065 0.88145 0.97053 0.92535 1.86482 1.21295 1.44982 1.84788 1.84399 1.17713 1.36614 1.69290 0.90201 0.89005 0.89196 0.79695 0.88430 0.89919 0.89686 0.89849 0.77035 0.91893 0.92292 0.95749 0.88862 0.93457 0.95298 0.92119 0.77967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.36 10.43 36.00 0.38 0.02 16 2 C -0.04 -0.38 7.39 -35.69 -0.26 -0.64 16 3 C -0.05 -0.47 11.80 -17.77 -0.21 -0.68 16 4 N -0.46 -6.04 11.29 -11.10 -0.13 -6.16 16 5 C 0.19 2.31 7.97 -12.95 -0.10 2.21 16 6 C 0.16 1.52 6.56 36.00 0.24 1.76 16 7 O -0.36 -4.78 9.86 -55.14 -0.54 -5.32 16 8 C 0.05 0.49 6.42 36.01 0.23 0.72 16 9 C 0.51 7.98 7.87 -10.98 -0.09 7.90 16 10 O -0.52 -10.90 16.16 -14.36 -0.23 -11.13 16 11 N -0.71 -10.25 4.92 -53.76 -0.26 -10.51 16 12 C 0.16 2.94 2.12 -67.89 -0.14 2.80 16 13 H 0.09 1.86 7.57 -51.93 -0.39 1.47 16 14 C -0.15 -2.88 5.65 -26.61 -0.15 -3.03 16 15 C 0.17 4.09 5.30 -3.70 -0.02 4.07 16 16 N -0.59 -14.30 2.99 -172.31 -0.52 -14.82 16 17 C -0.26 -6.88 9.58 -15.06 -0.14 -7.03 16 18 H 0.07 1.73 7.89 -52.48 -0.41 1.31 16 19 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 20 N -0.90 -25.84 11.20 55.49 0.62 -25.21 16 21 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 C 0.12 2.42 6.14 -3.71 -0.02 2.40 16 26 C 0.08 1.34 3.14 -26.61 -0.08 1.25 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 O -0.57 -8.28 13.16 -35.23 -0.46 -8.74 16 29 O -0.19 -2.33 10.78 5.35 0.06 -2.28 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.19 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.40 4.33 8.60 -40.82 -0.35 3.98 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.09 2.48 6.06 -51.93 -0.31 2.16 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.75 16 44 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 1.14 7.93 -51.93 -0.41 0.73 16 46 H 0.37 3.83 9.08 45.56 0.41 4.24 16 LS Contribution 387.77 15.07 5.84 5.84 Total: -1.00 -37.47 387.77 -7.22 -44.69 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.10 Total: 5.70 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: -0.47 Total: 11.78 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: -0.28 Total: -56.71 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.18 Total: -27.47 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -37.47 -7.22 -44.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099914283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.825 kcal (2) G-P(sol) polarization free energy of solvation -37.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds