Wall clock time and date at job start Sat Apr 11 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.51765 * 2 1 4 4 N 1.46498 * 109.47025 * 304.90340 * 3 2 1 5 5 C 1.34774 * 120.00371 * 179.97438 * 4 3 2 6 6 O 1.21289 * 119.99757 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00299 * 179.97438 * 5 4 3 8 8 C 1.53242 * 109.62282 * 299.63427 * 7 5 4 9 9 C 1.50622 * 109.15075 * 184.86665 * 8 7 5 10 10 O 1.21225 * 119.26861 * 208.91098 * 9 8 7 11 11 N 1.34149 * 121.37322 * 28.73411 * 9 8 7 12 12 C 1.34142 * 122.58474 * 359.63319 * 11 9 8 13 13 O 1.21225 * 119.35965 * 180.54590 * 12 11 9 14 14 C 1.50590 * 121.27930 * 0.57185 * 12 11 9 15 15 C 1.53295 * 109.55671 * 120.12819 * 2 1 3 16 16 N 1.47161 * 108.38407 * 67.64602 * 15 2 1 17 17 C 1.36928 * 120.98190 * 230.55821 * 16 15 2 18 18 H 1.08003 * 120.00283 * 26.54942 * 17 16 15 19 19 C 1.38814 * 120.00131 * 206.55000 * 17 16 15 20 20 N 1.31614 * 119.99758 * 17.02987 * 19 17 16 21 21 Si 1.86800 * 120.00018 * 197.02597 * 19 17 16 22 22 H 1.48505 * 109.47189 * 94.15618 * 21 19 17 23 23 H 1.48501 * 109.47093 * 214.15317 * 21 19 17 24 24 H 1.48497 * 109.47525 * 334.15311 * 21 19 17 25 25 C 1.47260 * 118.06063 * 50.53490 * 16 15 2 26 26 C 1.53296 * 108.32745 * 309.49455 * 25 16 15 27 27 O 1.42962 * 109.26525 * 52.27752 * 26 25 16 28 28 H 1.08996 * 109.47183 * 180.10308 * 1 2 3 29 29 H 1.08999 * 109.46681 * 300.09996 * 1 2 3 30 30 H 1.08998 * 109.47331 * 60.10268 * 1 2 3 31 31 H 1.09000 * 109.46704 * 64.89534 * 3 2 1 32 32 H 1.08992 * 109.47300 * 184.90067 * 3 2 1 33 33 H 0.97005 * 120.00233 * 359.97438 * 4 3 2 34 34 H 1.09001 * 109.62140 * 60.00383 * 7 5 4 35 35 H 1.09004 * 109.51783 * 304.56608 * 8 7 5 36 36 H 1.08997 * 109.52531 * 64.75126 * 8 7 5 37 37 H 0.97000 * 118.70493 * 179.61474 * 11 9 8 38 38 H 1.09004 * 109.51883 * 210.97688 * 14 12 11 39 39 H 1.08990 * 109.57474 * 90.81944 * 14 12 11 40 40 H 1.08999 * 109.68649 * 187.36428 * 15 2 1 41 41 H 1.08994 * 109.68334 * 307.92556 * 15 2 1 42 42 H 0.97003 * 120.00124 * 180.02562 * 20 19 17 43 43 H 1.08992 * 109.74860 * 189.76821 * 25 16 15 44 44 H 1.09001 * 109.67931 * 69.17124 * 25 16 15 45 45 H 1.09001 * 109.50960 * 292.33735 * 26 25 16 46 46 H 1.09000 * 109.51960 * 172.23561 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4594 2.1663 -1.1328 5 6 1.7688 3.4625 -1.3345 6 8 2.5286 4.0294 -0.5779 7 6 1.1708 4.2074 -2.5001 8 6 1.5842 3.5295 -3.8108 9 6 1.0819 4.3488 -4.9706 10 8 0.8198 3.7960 -6.0172 11 7 0.9155 5.6759 -4.8681 12 6 1.1751 6.3514 -3.7386 13 8 0.9945 7.5498 -3.7079 14 6 1.6872 5.6501 -2.5083 15 6 2.0431 -0.7251 1.2494 16 7 1.6980 -2.1509 1.1331 17 6 1.0638 -2.8080 2.1534 18 1 0.4393 -2.2597 2.8432 19 6 1.2234 -4.1790 2.3011 20 7 2.2183 -4.7944 1.6980 21 14 0.0263 -5.1505 3.3558 22 1 -1.0500 -5.7078 2.4977 23 1 0.7475 -6.2605 4.0287 24 1 -0.5705 -4.2555 4.3796 25 6 2.0541 -2.8505 -0.1128 26 6 1.5405 -2.0209 -1.2952 27 8 2.0075 -0.6758 -1.1658 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3633 0.5154 0.8891 30 1 -0.3634 0.5122 -0.8909 31 1 1.7515 1.9301 0.9306 32 1 3.1275 1.4425 -0.0878 33 1 0.8514 1.7131 -1.7377 34 1 0.0841 4.2081 -2.4153 35 1 2.6712 3.4629 -3.8592 36 1 1.1548 2.5287 -3.8546 37 1 0.5952 6.1664 -5.6412 38 1 1.3313 6.1695 -1.6184 39 1 2.7770 5.6469 -2.5167 40 1 3.1251 -0.6139 1.3200 41 1 1.5716 -0.3045 2.1375 42 1 2.3297 -5.7525 1.8008 43 1 1.5899 -3.8365 -0.1271 44 1 3.1372 -2.9530 -0.1795 45 1 0.4506 -2.0289 -1.2993 46 1 1.9113 -2.4469 -2.2274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108279016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:50 Heat of formation + Delta-G solvation = -128.877432 kcal Electronic energy + Delta-G solvation = -30266.818532 eV Core-core repulsion = 25964.320202 eV Total energy + Delta-G solvation = -4302.498330 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.01842 -40.10598 -39.27636 -38.99391 -35.91561 -35.23966 -34.40637 -34.26532 -32.11321 -30.94107 -29.33553 -28.26360 -27.12136 -26.06204 -24.59528 -23.64331 -23.20984 -21.45414 -20.63185 -19.84243 -18.80478 -18.27494 -17.83519 -17.58419 -16.96397 -16.31425 -16.28664 -15.81961 -15.50689 -15.14873 -15.09364 -14.84193 -14.68341 -14.54127 -14.14243 -14.00886 -13.82491 -13.63894 -13.11597 -12.94556 -12.86365 -12.57457 -12.15621 -11.99495 -11.81018 -11.72868 -11.27619 -11.21400 -11.15730 -10.91515 -10.74776 -10.73198 -10.68356 -10.50774 -10.29204 -10.10260 -10.02093 -9.59824 -9.18642 -9.11886 -8.59825 -6.81302 -5.90859 -3.34696 1.00848 2.20356 2.26643 2.35025 2.89985 3.29264 3.36975 3.38251 3.43658 3.84040 4.00041 4.07198 4.17359 4.36789 4.41615 4.66331 4.83465 4.95997 5.01038 5.19588 5.22237 5.27210 5.32670 5.35711 5.46331 5.52331 5.69750 5.83785 5.95088 5.97729 6.04400 6.22215 6.31612 6.32133 6.34975 6.41536 6.58276 6.67276 6.85907 7.03319 7.29128 7.32579 7.44666 7.64956 7.78204 7.96035 8.26370 9.04533 9.67312 10.24053 11.17162 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.002315 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.380310 B =12090.253347 C =12578.912058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.087 3.913 3 C 0.137 3.863 4 N -0.712 5.712 5 C 0.519 3.481 6 O -0.535 6.535 7 C -0.114 4.114 8 C -0.136 4.136 9 C 0.530 3.470 10 O -0.496 6.496 11 N -0.677 5.677 12 C 0.528 3.472 13 O -0.499 6.499 14 C -0.123 4.123 15 C 0.129 3.871 16 N -0.590 5.590 17 C -0.255 4.255 18 H 0.069 0.931 19 C 0.003 3.997 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.140 3.860 26 C 0.036 3.964 27 O -0.384 6.384 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.404 0.596 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.124 0.876 37 H 0.413 0.587 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.029 0.971 41 H 0.063 0.937 42 H 0.255 0.745 43 H 0.093 0.907 44 H 0.028 0.972 45 H 0.046 0.954 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 16.472 -10.780 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C 0.013 3.987 4 N -0.364 5.364 5 C 0.304 3.696 6 O -0.411 6.411 7 C -0.136 4.136 8 C -0.176 4.176 9 C 0.318 3.682 10 O -0.368 6.368 11 N -0.342 5.342 12 C 0.317 3.683 13 O -0.371 6.371 14 C -0.163 4.163 15 C 0.001 3.999 16 N -0.313 5.313 17 C -0.384 4.384 18 H 0.086 0.914 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.734 3.266 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.014 3.986 26 C -0.042 4.042 27 O -0.303 6.303 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.240 0.760 34 H 0.132 0.868 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.253 0.747 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.111 0.889 44 H 0.046 0.954 45 H 0.064 0.936 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.545 16.967 -10.655 20.196 hybrid contribution -1.134 -0.896 0.059 1.446 sum -3.678 16.071 -10.595 19.598 Atomic orbital electron populations 1.22251 0.95569 1.03817 1.00754 1.22199 0.93572 0.90298 0.89360 1.21416 0.99032 0.89509 0.88735 1.46007 1.48732 1.10681 1.30940 1.19981 0.81705 0.82228 0.85706 1.90757 1.35713 1.67664 1.47010 1.21516 1.03354 0.94835 0.93863 1.21992 1.05350 1.00479 0.89805 1.20795 0.75679 0.81605 0.90105 1.90830 1.45923 1.70089 1.29983 1.44907 1.62443 1.10200 1.16688 1.20971 0.75336 0.87549 0.84466 1.90812 1.47863 1.14737 1.83732 1.21783 1.04768 0.93758 0.95947 1.21416 0.97485 0.86936 0.94051 1.44037 1.68625 1.04378 1.14287 1.19178 1.21025 0.90697 1.07509 0.91355 1.25048 0.97180 0.98024 0.99306 1.70033 1.28504 1.09284 1.46738 0.86248 0.80592 0.79838 0.79924 1.21422 1.21695 1.20342 1.21444 0.97968 0.96131 0.83017 1.23357 0.98266 0.82423 1.00122 1.87813 1.72987 1.26726 1.42805 0.90265 0.92009 0.93620 0.89945 0.90455 0.75984 0.86776 0.86052 0.85794 0.74734 0.85792 0.85853 0.95347 0.91826 0.93477 0.88898 0.95417 0.93603 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.29 7.86 37.16 0.29 -1.99 16 2 C 0.09 1.31 0.78 -90.47 -0.07 1.24 16 3 C 0.14 1.72 4.85 -4.04 -0.02 1.70 16 4 N -0.71 -6.87 5.10 -60.30 -0.31 -7.18 16 5 C 0.52 4.80 7.16 -10.99 -0.08 4.72 16 6 O -0.53 -6.89 15.95 5.55 0.09 -6.80 16 7 C -0.11 -0.65 2.65 -91.52 -0.24 -0.89 16 8 C -0.14 -0.72 5.24 -27.80 -0.15 -0.87 16 9 C 0.53 3.77 7.75 -11.30 -0.09 3.68 16 10 O -0.50 -5.33 17.87 5.60 0.10 -5.23 16 11 N -0.68 -4.33 5.09 -11.74 -0.06 -4.39 16 12 C 0.53 3.88 7.74 -11.32 -0.09 3.79 16 13 O -0.50 -5.45 17.88 5.60 0.10 -5.35 16 14 C -0.12 -0.76 4.71 -27.81 -0.13 -0.89 16 15 C 0.13 2.45 5.41 -3.53 -0.02 2.43 16 16 N -0.59 -13.61 2.57 -171.74 -0.44 -14.05 16 17 C -0.25 -6.52 9.64 -15.06 -0.15 -6.66 16 18 H 0.07 1.71 7.88 -52.48 -0.41 1.30 16 19 C 0.00 0.09 4.94 -17.43 -0.09 0.00 16 20 N -0.90 -24.99 11.17 55.49 0.62 -24.37 16 21 Si 0.90 20.68 29.59 -169.99 -5.03 15.65 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 C 0.14 3.11 5.45 -3.47 -0.02 3.09 16 26 C 0.04 0.62 6.60 37.31 0.25 0.87 16 27 O -0.38 -6.30 10.17 -35.23 -0.36 -6.66 16 28 H 0.08 1.31 6.12 -51.93 -0.32 0.99 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.04 0.50 6.59 -51.93 -0.34 0.16 16 31 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.40 3.31 6.55 -40.82 -0.27 3.05 16 34 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 0.59 7.74 -51.93 -0.40 0.19 16 37 H 0.41 2.40 8.79 -40.82 -0.36 2.04 16 38 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.12 0.73 7.98 -51.93 -0.41 0.32 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 42 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 43 H 0.09 2.29 6.18 -51.93 -0.32 1.97 16 44 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.77 6.25 -51.93 -0.32 0.45 16 46 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 371.11 15.07 5.59 5.59 Total: -1.00 -32.99 371.11 -6.80 -39.80 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -6.51 Total: 2.76 kcal Atomic # 6 Polarization: 10.82 SS G_CDS: -0.59 Total: 10.22 kcal Atomic # 7 Polarization: -49.80 SS G_CDS: -0.19 Total: -49.99 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.07 Total: -24.03 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.99 -6.80 -39.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108279016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.079 kcal (2) G-P(sol) polarization free energy of solvation -32.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds