Wall clock time and date at job start Sat Apr 11 2020 05:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.51765 * 2 1 4 4 N 1.46498 * 109.47025 * 304.90340 * 3 2 1 5 5 C 1.34774 * 120.00371 * 179.97438 * 4 3 2 6 6 O 1.21289 * 119.99757 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.00299 * 179.97438 * 5 4 3 8 8 C 1.53242 * 109.62282 * 299.63427 * 7 5 4 9 9 C 1.50622 * 109.15075 * 184.86665 * 8 7 5 10 10 O 1.21225 * 119.26861 * 208.91098 * 9 8 7 11 11 N 1.34149 * 121.37322 * 28.73411 * 9 8 7 12 12 C 1.34142 * 122.58474 * 359.63319 * 11 9 8 13 13 O 1.21225 * 119.35965 * 180.54590 * 12 11 9 14 14 C 1.50590 * 121.27930 * 0.57185 * 12 11 9 15 15 C 1.53295 * 109.55671 * 120.12819 * 2 1 3 16 16 N 1.47161 * 108.38407 * 67.64602 * 15 2 1 17 17 C 1.36928 * 120.98190 * 230.55821 * 16 15 2 18 18 H 1.08003 * 120.00283 * 26.54942 * 17 16 15 19 19 C 1.38814 * 120.00131 * 206.55000 * 17 16 15 20 20 N 1.31614 * 119.99758 * 17.02987 * 19 17 16 21 21 Si 1.86800 * 120.00018 * 197.02597 * 19 17 16 22 22 H 1.48505 * 109.47189 * 94.15618 * 21 19 17 23 23 H 1.48501 * 109.47093 * 214.15317 * 21 19 17 24 24 H 1.48497 * 109.47525 * 334.15311 * 21 19 17 25 25 C 1.47260 * 118.06063 * 50.53490 * 16 15 2 26 26 C 1.53296 * 108.32745 * 309.49455 * 25 16 15 27 27 O 1.42962 * 109.26525 * 52.27752 * 26 25 16 28 28 H 1.08996 * 109.47183 * 180.10308 * 1 2 3 29 29 H 1.08999 * 109.46681 * 300.09996 * 1 2 3 30 30 H 1.08998 * 109.47331 * 60.10268 * 1 2 3 31 31 H 1.09000 * 109.46704 * 64.89534 * 3 2 1 32 32 H 1.08992 * 109.47300 * 184.90067 * 3 2 1 33 33 H 0.97005 * 120.00233 * 359.97438 * 4 3 2 34 34 H 1.09001 * 109.62140 * 60.00383 * 7 5 4 35 35 H 1.09004 * 109.51783 * 304.56608 * 8 7 5 36 36 H 1.08997 * 109.52531 * 64.75126 * 8 7 5 37 37 H 0.97000 * 118.70493 * 179.61474 * 11 9 8 38 38 H 1.09004 * 109.51883 * 210.97688 * 14 12 11 39 39 H 1.08990 * 109.57474 * 90.81944 * 14 12 11 40 40 H 1.08999 * 109.68649 * 187.36428 * 15 2 1 41 41 H 1.08994 * 109.68334 * 307.92556 * 15 2 1 42 42 H 0.97003 * 120.00124 * 180.02562 * 20 19 17 43 43 H 1.08992 * 109.74860 * 189.76821 * 25 16 15 44 44 H 1.09001 * 109.67931 * 69.17124 * 25 16 15 45 45 H 1.09001 * 109.50960 * 292.33735 * 26 25 16 46 46 H 1.09000 * 109.51960 * 172.23561 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0411 1.4421 0.0000 4 7 1.4594 2.1663 -1.1328 5 6 1.7688 3.4625 -1.3345 6 8 2.5286 4.0294 -0.5779 7 6 1.1708 4.2074 -2.5001 8 6 1.5842 3.5295 -3.8108 9 6 1.0819 4.3488 -4.9706 10 8 0.8198 3.7960 -6.0172 11 7 0.9155 5.6759 -4.8681 12 6 1.1751 6.3514 -3.7386 13 8 0.9945 7.5498 -3.7079 14 6 1.6872 5.6501 -2.5083 15 6 2.0431 -0.7251 1.2494 16 7 1.6980 -2.1509 1.1331 17 6 1.0638 -2.8080 2.1534 18 1 0.4393 -2.2597 2.8432 19 6 1.2234 -4.1790 2.3011 20 7 2.2183 -4.7944 1.6980 21 14 0.0263 -5.1505 3.3558 22 1 -1.0500 -5.7078 2.4977 23 1 0.7475 -6.2605 4.0287 24 1 -0.5705 -4.2555 4.3796 25 6 2.0541 -2.8505 -0.1128 26 6 1.5405 -2.0209 -1.2952 27 8 2.0075 -0.6758 -1.1658 28 1 -0.3633 -1.0276 0.0018 29 1 -0.3633 0.5154 0.8891 30 1 -0.3634 0.5122 -0.8909 31 1 1.7515 1.9301 0.9306 32 1 3.1275 1.4425 -0.0878 33 1 0.8514 1.7131 -1.7377 34 1 0.0841 4.2081 -2.4153 35 1 2.6712 3.4629 -3.8592 36 1 1.1548 2.5287 -3.8546 37 1 0.5952 6.1664 -5.6412 38 1 1.3313 6.1695 -1.6184 39 1 2.7770 5.6469 -2.5167 40 1 3.1251 -0.6139 1.3200 41 1 1.5716 -0.3045 2.1375 42 1 2.3297 -5.7525 1.8008 43 1 1.5899 -3.8365 -0.1271 44 1 3.1372 -2.9530 -0.1795 45 1 0.4506 -2.0289 -1.2993 46 1 1.9113 -2.4469 -2.2274 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108279016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:49 Heat of formation + Delta-G solvation = -154.810140 kcal Electronic energy + Delta-G solvation = -30267.943059 eV Core-core repulsion = 25964.320202 eV Total energy + Delta-G solvation = -4303.622857 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62890 -41.08229 -40.19256 -39.95620 -36.69684 -36.47610 -35.82107 -34.87258 -33.51460 -32.60018 -29.90893 -29.72770 -28.16464 -27.54675 -25.52904 -24.83917 -24.23192 -22.94135 -21.43673 -20.35131 -20.19850 -18.97031 -18.81932 -18.48804 -18.18902 -17.43961 -17.02713 -16.88428 -16.62429 -16.38986 -16.05497 -15.75764 -15.63131 -15.45674 -15.43285 -15.13894 -14.97541 -14.75672 -14.56372 -14.27896 -13.81012 -13.48214 -13.35555 -13.06979 -12.88793 -12.74541 -12.54980 -12.46219 -12.38988 -12.28274 -12.06287 -11.98028 -11.96214 -11.82296 -11.39533 -11.37477 -11.11626 -10.81396 -10.73011 -10.46163 -10.05138 -8.69193 -7.88239 -5.34574 0.40778 1.47460 1.49148 1.55028 1.57700 1.68517 1.72653 2.13309 2.49819 2.82936 2.89447 3.26747 3.32338 3.44873 3.53394 3.60695 3.92117 3.97919 4.02789 4.09904 4.15059 4.40831 4.50494 4.55729 4.57561 4.67733 4.74436 4.76515 4.78580 4.83375 4.89763 4.93442 5.00157 5.04886 5.12763 5.27488 5.41813 5.47586 5.59694 5.65978 5.75813 6.29000 6.31258 6.40309 6.55434 6.75187 7.09664 7.22533 7.78611 8.32022 9.17390 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025744 B = 0.002315 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.380310 B =12090.253347 C =12578.912058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 C 0.147 3.853 4 N -0.705 5.705 5 C 0.526 3.474 6 O -0.570 6.570 7 C -0.099 4.099 8 C -0.132 4.132 9 C 0.541 3.459 10 O -0.532 6.532 11 N -0.671 5.671 12 C 0.541 3.459 13 O -0.536 6.536 14 C -0.119 4.119 15 C 0.122 3.878 16 N -0.605 5.605 17 C -0.256 4.256 18 H 0.072 0.928 19 C -0.051 4.051 20 N -0.937 5.937 21 Si 0.966 3.034 22 H -0.285 1.285 23 H -0.299 1.299 24 H -0.268 1.268 25 C 0.144 3.856 26 C 0.052 3.948 27 O -0.381 6.381 28 H 0.051 0.949 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.415 0.585 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.416 0.584 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.012 0.988 41 H 0.068 0.932 42 H 0.250 0.750 43 H 0.063 0.937 44 H -0.005 1.005 45 H 0.057 0.943 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.637 17.836 -11.497 21.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 C 0.023 3.977 4 N -0.357 5.357 5 C 0.312 3.688 6 O -0.449 6.449 7 C -0.120 4.120 8 C -0.171 4.171 9 C 0.331 3.669 10 O -0.406 6.406 11 N -0.335 5.335 12 C 0.332 3.668 13 O -0.410 6.410 14 C -0.159 4.159 15 C -0.005 4.005 16 N -0.330 5.330 17 C -0.386 4.386 18 H 0.090 0.910 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.795 3.205 22 H -0.211 1.211 23 H -0.226 1.226 24 H -0.192 1.192 25 C 0.018 3.982 26 C -0.026 4.026 27 O -0.300 6.300 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.106 0.894 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.159 0.841 35 H 0.149 0.851 36 H 0.156 0.844 37 H 0.256 0.744 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.030 0.970 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.082 0.918 44 H 0.013 0.987 45 H 0.076 0.924 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -4.099 18.360 -11.390 21.992 hybrid contribution -0.589 -1.255 0.315 1.422 sum -4.688 17.105 -11.076 20.910 Atomic orbital electron populations 1.22184 0.93887 1.02683 1.02978 1.22084 0.94704 0.90916 0.86737 1.21115 0.98291 0.88085 0.90240 1.45859 1.48754 1.10825 1.30294 1.20397 0.80780 0.81706 0.85897 1.90760 1.37306 1.68312 1.48552 1.21432 1.04616 0.93667 0.92282 1.22031 1.06043 1.00614 0.88423 1.21008 0.74487 0.81428 0.89933 1.90831 1.47649 1.70637 1.31508 1.44864 1.61802 1.10194 1.16646 1.21072 0.74199 0.86899 0.84672 1.90809 1.49599 1.16372 1.84255 1.21763 1.05003 0.93908 0.95191 1.21608 0.96772 0.85308 0.96784 1.44262 1.68603 1.05871 1.14216 1.19505 1.20458 0.91040 1.07617 0.91024 1.25772 0.98709 0.99072 1.01068 1.70189 1.30354 1.09005 1.48726 0.85265 0.78495 0.78201 0.78555 1.21136 1.22639 1.19211 1.21301 0.95816 0.96047 0.85032 1.23140 0.98776 0.82104 0.98573 1.87828 1.73265 1.25936 1.42991 0.92977 0.91140 0.90120 0.89379 0.91819 0.74717 0.84102 0.85055 0.84413 0.74447 0.85779 0.85439 0.96983 0.91308 0.94113 0.91828 0.98688 0.92445 0.87787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 7.86 71.98 0.57 -3.34 16 2 C 0.10 2.72 0.78 -10.70 -0.01 2.71 16 3 C 0.15 3.36 4.85 86.38 0.42 3.77 16 4 N -0.71 -11.12 5.10 -463.07 -2.36 -13.48 16 5 C 0.53 8.02 7.16 87.66 0.63 8.65 16 6 O -0.57 -13.39 15.95 -3.06 -0.05 -13.44 16 7 C -0.10 -0.76 2.65 -11.38 -0.03 -0.79 16 8 C -0.13 -0.93 5.24 29.90 0.16 -0.78 16 9 C 0.54 6.32 7.75 87.73 0.68 6.99 16 10 O -0.53 -10.39 17.87 -2.86 -0.05 -10.44 16 11 N -0.67 -7.23 5.09 -428.59 -2.18 -9.41 16 12 C 0.54 6.90 7.74 87.72 0.68 7.57 16 13 O -0.54 -11.06 17.88 -2.86 -0.05 -11.12 16 14 C -0.12 -1.16 4.71 29.89 0.14 -1.02 16 15 C 0.12 4.60 5.41 86.35 0.47 5.06 16 16 N -0.61 -28.24 2.57 -697.26 -1.79 -30.03 16 17 C -0.26 -13.20 9.64 84.04 0.81 -12.39 16 18 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 19 C -0.05 -2.71 4.94 84.86 0.42 -2.29 16 20 N -0.94 -53.59 11.17 21.65 0.24 -53.35 16 21 Si 0.97 42.96 29.59 68.60 2.03 44.99 16 22 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.30 -13.64 7.11 99.48 0.71 -12.93 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 C 0.14 6.51 5.45 86.33 0.47 6.98 16 26 C 0.05 1.72 6.60 72.08 0.48 2.19 16 27 O -0.38 -11.67 10.17 -148.98 -1.52 -13.18 16 28 H 0.05 1.60 6.12 -2.39 -0.01 1.58 16 29 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 1.40 6.59 -2.39 -0.02 1.39 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.41 4.89 6.55 -92.70 -0.61 4.28 16 34 H 0.14 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.14 0.71 7.74 -2.39 -0.02 0.69 16 37 H 0.42 4.23 8.79 -92.71 -0.81 3.41 16 38 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.13 1.22 7.98 -2.39 -0.02 1.20 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.07 2.48 7.95 -2.39 -0.02 2.46 16 42 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 43 H 0.06 3.25 6.18 -2.39 -0.01 3.23 16 44 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 45 H 0.06 1.82 6.25 -2.39 -0.01 1.80 16 46 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -73.55 371.11 -0.25 -73.80 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -0.39 Total: 12.33 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 5.87 Total: 23.34 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -6.10 Total: -106.27 kcal Atomic # 8 Polarization: -46.51 SS G_CDS: -1.67 Total: -48.18 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -73.55 -0.25 -73.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108279016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.010 kcal (2) G-P(sol) polarization free energy of solvation -73.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds