Wall clock time and date at job start Sat Apr 11 2020 05:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.55410 * 2 1 4 4 N 1.46499 * 109.47354 * 304.87420 * 3 2 1 5 5 C 1.34767 * 120.00065 * 179.97438 * 4 3 2 6 6 O 1.21290 * 119.99984 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00116 * 180.02562 * 5 4 3 8 8 N 1.46499 * 109.47265 * 179.97438 * 7 5 4 9 9 C 1.33872 * 122.76430 * 269.70604 * 8 7 5 10 10 O 1.21231 * 125.39459 * 359.97438 * 9 8 7 11 11 C 1.51322 * 109.21065 * 179.84328 * 9 8 7 12 12 C 1.54232 * 103.55127 * 0.38638 * 11 9 8 13 13 C 1.33882 * 122.76627 * 89.99948 * 8 7 5 14 14 O 1.21235 * 125.39159 * 0.02562 * 13 8 7 15 15 C 1.53292 * 109.51267 * 120.12825 * 2 1 3 16 16 N 1.47165 * 108.41376 * 67.64295 * 15 2 1 17 17 C 1.36935 * 120.99578 * 230.54471 * 16 15 2 18 18 H 1.07992 * 120.00186 * 153.32389 * 17 16 15 19 19 C 1.38816 * 119.99602 * 333.33361 * 17 16 15 20 20 N 1.31616 * 120.00208 * 343.52858 * 19 17 16 21 21 Si 1.86797 * 119.99898 * 163.53345 * 19 17 16 22 22 H 1.48500 * 109.47409 * 59.99733 * 21 19 17 23 23 H 1.48501 * 109.46973 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47195 * 299.99374 * 21 19 17 25 25 C 1.47151 * 118.02621 * 50.46989 * 16 15 2 26 26 C 1.53294 * 108.41779 * 309.52979 * 25 16 15 27 27 O 1.42966 * 109.22198 * 52.28429 * 26 25 16 28 28 H 1.08997 * 109.47587 * 180.12462 * 1 2 3 29 29 H 1.09005 * 109.47135 * 300.12598 * 1 2 3 30 30 H 1.09003 * 109.47554 * 60.12280 * 1 2 3 31 31 H 1.09003 * 109.46779 * 64.87711 * 3 2 1 32 32 H 1.08998 * 109.46843 * 184.87144 * 3 2 1 33 33 H 0.97002 * 119.99524 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.47197 * 299.99758 * 7 5 4 35 35 H 1.08998 * 109.47539 * 59.99873 * 7 5 4 36 36 H 1.08996 * 110.79407 * 241.78071 * 11 9 8 37 37 H 1.08996 * 110.54992 * 118.87757 * 11 9 8 38 38 H 1.08999 * 110.60138 * 241.25803 * 12 11 9 39 39 H 1.08998 * 110.73671 * 118.36107 * 12 11 9 40 40 H 1.09007 * 109.68283 * 187.34438 * 15 2 1 41 41 H 1.09002 * 109.68326 * 307.89778 * 15 2 1 42 42 H 0.96998 * 120.00577 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.68282 * 189.78626 * 25 16 15 44 44 H 1.09005 * 109.68198 * 69.27128 * 25 16 15 45 45 H 1.08997 * 109.51621 * 172.20381 * 26 25 16 46 46 H 1.08999 * 109.51217 * 292.30900 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.4613 2.1664 -1.1331 5 6 1.7717 3.4622 -1.3348 6 8 2.5315 4.0287 -0.5780 7 6 1.1739 4.2076 -2.5001 8 7 1.6634 5.5884 -2.4994 9 6 1.0319 6.5807 -1.8600 10 8 0.0077 6.4649 -1.2218 11 6 1.8007 7.8690 -2.0575 12 6 2.9934 7.4466 -2.9394 13 6 2.7761 5.9631 -3.1429 14 8 3.4953 5.2299 -3.7870 15 6 2.0420 -0.7252 1.2497 16 7 1.6966 -2.1511 1.1339 17 6 1.0619 -2.8080 2.1541 18 1 0.4435 -3.6673 1.9409 19 6 1.2134 -2.3693 3.4624 20 7 2.1955 -1.5497 3.7721 21 14 0.0232 -2.9422 4.7832 22 1 0.0797 -4.4221 4.8923 23 1 0.3996 -2.3356 6.0854 24 1 -1.3554 -2.5247 4.4222 25 6 2.0521 -2.8497 -0.1115 26 6 1.5396 -2.0210 -1.2949 27 8 2.0075 -0.6763 -1.1656 28 1 -0.3634 -1.0276 0.0022 29 1 -0.3634 0.5158 0.8889 30 1 -0.3634 0.5119 -0.8911 31 1 1.7525 1.9302 0.9305 32 1 3.1285 1.4414 -0.0873 33 1 0.8534 1.7133 -1.7382 34 1 1.4635 3.7196 -3.4308 35 1 0.0875 4.2077 -2.4126 36 1 2.1498 8.2615 -1.1025 37 1 1.1852 8.6068 -2.5722 38 1 3.9358 7.6291 -2.4231 39 1 2.9724 7.9719 -3.8943 40 1 3.1241 -0.6148 1.3208 41 1 1.5704 -0.3042 2.1376 42 1 2.3016 -1.2434 4.6863 43 1 1.5871 -3.8356 -0.1249 44 1 3.1351 -2.9537 -0.1778 45 1 1.9113 -2.4477 -2.2264 46 1 0.4496 -2.0291 -1.3001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108387543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:08 Heat of formation + Delta-G solvation = -108.485450 kcal Electronic energy + Delta-G solvation = -30454.390659 eV Core-core repulsion = 26152.776591 eV Total energy + Delta-G solvation = -4301.614068 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.21416 -39.73522 -38.82443 -38.73000 -36.09658 -35.02250 -34.36499 -33.78350 -31.83168 -31.27583 -28.63106 -27.96047 -26.51714 -26.36490 -25.28289 -23.25495 -22.70334 -21.59327 -20.78645 -19.76448 -18.75835 -17.95132 -17.68456 -17.02150 -16.77881 -16.59350 -15.91849 -15.53776 -15.25753 -14.91973 -14.81148 -14.48074 -14.45188 -14.23439 -14.18879 -14.01921 -13.62038 -13.49476 -13.13728 -13.06497 -13.04173 -12.66151 -12.27894 -11.88501 -11.76065 -11.61953 -11.21936 -11.04149 -10.98674 -10.83197 -10.70367 -10.65987 -10.34627 -10.33812 -10.29161 -10.01621 -9.70264 -9.54179 -9.07278 -8.93201 -8.55794 -6.75941 -5.86434 -3.30430 1.24145 2.01941 2.42172 2.56940 3.26985 3.33865 3.39977 3.40396 3.71919 3.85763 4.05313 4.21353 4.41841 4.44589 4.65032 4.73305 4.88364 5.04236 5.05962 5.11650 5.20127 5.23580 5.31995 5.44268 5.48916 5.63798 5.89063 5.91094 5.97610 6.05612 6.11034 6.27064 6.40775 6.46908 6.51767 6.63236 6.72527 6.80116 7.00964 7.04479 7.40425 7.43934 7.54566 7.68552 7.85293 8.18461 8.31178 9.08679 9.71710 10.29065 11.21614 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002603 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.916831 B =10754.522193 C =11508.754777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.078 3.922 3 C 0.141 3.859 4 N -0.711 5.711 5 C 0.499 3.501 6 O -0.537 6.537 7 C 0.078 3.922 8 N -0.558 5.558 9 C 0.531 3.469 10 O -0.479 6.479 11 C -0.154 4.154 12 C -0.154 4.154 13 C 0.531 3.469 14 O -0.479 6.479 15 C 0.161 3.839 16 N -0.590 5.590 17 C -0.256 4.256 18 H 0.068 0.932 19 C 0.004 3.996 20 N -0.902 5.902 21 Si 0.904 3.096 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.283 1.283 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.384 6.384 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.403 0.597 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.121 0.879 40 H 0.030 0.970 41 H 0.096 0.904 42 H 0.257 0.743 43 H 0.061 0.939 44 H 0.026 0.974 45 H 0.080 0.920 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 16.824 -15.929 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.037 3.963 3 C 0.017 3.983 4 N -0.363 5.363 5 C 0.283 3.717 6 O -0.414 6.414 7 C -0.047 4.047 8 N -0.301 5.301 9 C 0.320 3.680 10 O -0.350 6.350 11 C -0.193 4.193 12 C -0.194 4.194 13 C 0.320 3.680 14 O -0.349 6.349 15 C 0.034 3.966 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.733 3.267 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.210 1.210 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.304 6.304 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.093 0.907 33 H 0.239 0.761 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.048 0.952 41 H 0.114 0.886 42 H 0.067 0.933 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.098 0.902 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.212 16.866 -15.314 22.889 hybrid contribution -0.982 -0.893 0.716 1.508 sum -3.194 15.973 -14.598 21.873 Atomic orbital electron populations 1.22205 0.95702 1.03330 1.00695 1.22554 0.93597 0.90540 0.89646 1.21382 0.98867 0.89481 0.88573 1.45913 1.48842 1.10501 1.31041 1.20595 0.82069 0.82669 0.86403 1.90721 1.35881 1.67821 1.46931 1.21580 1.01796 0.81263 1.00067 1.46303 1.26169 1.09802 1.47830 1.20830 0.83990 0.86579 0.76599 1.90796 1.22347 1.85000 1.36872 1.22445 0.96852 0.96224 1.03823 1.22448 1.01275 0.92218 1.03414 1.20836 0.78794 0.91546 0.76850 1.90800 1.46276 1.59934 1.37932 1.21282 0.97839 0.83967 0.93528 1.43981 1.68672 1.04901 1.13840 1.19108 1.21528 1.12556 0.85315 0.91460 1.25055 0.97235 1.00037 0.97147 1.69995 1.29148 1.36756 1.18651 0.86350 0.80902 0.78366 0.81041 1.20836 1.21526 1.20956 1.21601 0.97589 0.95225 0.87335 1.23039 0.98294 0.83096 0.98765 1.87828 1.72917 1.25861 1.43758 0.90699 0.91811 0.93979 0.89880 0.90701 0.76135 0.85829 0.85887 0.85893 0.86106 0.85926 0.86077 0.95244 0.88576 0.93340 0.92023 0.95637 0.90152 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 7.86 37.15 0.29 -2.44 16 2 C 0.08 1.44 0.78 -90.47 -0.07 1.37 16 3 C 0.14 2.43 4.85 -4.04 -0.02 2.41 16 4 N -0.71 -10.15 5.19 -60.29 -0.31 -10.46 16 5 C 0.50 7.38 7.90 -10.99 -0.09 7.30 16 6 O -0.54 -10.01 16.43 5.55 0.09 -9.92 16 7 C 0.08 0.83 6.04 -5.20 -0.03 0.80 16 8 N -0.56 -5.94 2.04 -116.63 -0.24 -6.18 16 9 C 0.53 5.38 8.08 -11.08 -0.09 5.29 16 10 O -0.48 -6.52 17.47 5.60 0.10 -6.42 16 11 C -0.15 -0.76 7.03 -26.93 -0.19 -0.95 16 12 C -0.15 -0.76 7.03 -26.94 -0.19 -0.95 16 13 C 0.53 5.39 8.08 -11.09 -0.09 5.30 16 14 O -0.48 -6.55 17.48 5.60 0.10 -6.45 16 15 C 0.16 3.74 4.11 -3.53 -0.01 3.72 16 16 N -0.59 -14.34 2.57 -171.81 -0.44 -14.78 16 17 C -0.26 -6.78 9.65 -15.06 -0.15 -6.93 16 18 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 20 N -0.90 -25.70 11.14 55.49 0.62 -25.08 16 21 Si 0.90 21.28 29.58 -169.99 -5.03 16.25 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 C 0.11 2.23 6.73 -3.53 -0.02 2.20 16 26 C 0.05 0.79 6.60 37.31 0.25 1.03 16 27 O -0.38 -7.05 10.17 -35.23 -0.36 -7.41 16 28 H 0.07 1.38 6.12 -51.93 -0.32 1.06 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.58 6.59 -51.93 -0.34 0.23 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 32 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.40 4.82 7.00 -40.82 -0.29 4.54 16 34 H 0.12 1.09 7.83 -51.93 -0.41 0.69 16 35 H 0.12 1.07 7.82 -51.93 -0.41 0.66 16 36 H 0.12 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.12 0.28 8.14 -51.93 -0.42 -0.15 16 40 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.10 2.47 6.16 -51.93 -0.32 2.15 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.06 1.19 7.96 -51.93 -0.41 0.78 16 44 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 46 H 0.05 0.79 6.26 -51.93 -0.32 0.47 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -36.08 376.42 -6.89 -42.97 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.59 Total: 3.62 kcal Atomic # 6 Polarization: 18.69 SS G_CDS: -0.50 Total: 18.19 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.37 Total: -56.50 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.07 Total: -30.20 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.08 -6.89 -42.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108387543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.516 kcal (2) G-P(sol) polarization free energy of solvation -36.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds