Wall clock time and date at job start Sat Apr 11 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.55410 * 2 1 4 4 N 1.46499 * 109.47354 * 304.87420 * 3 2 1 5 5 C 1.34767 * 120.00065 * 179.97438 * 4 3 2 6 6 O 1.21290 * 119.99984 * 359.97438 * 5 4 3 7 7 C 1.50695 * 120.00116 * 180.02562 * 5 4 3 8 8 N 1.46499 * 109.47265 * 179.97438 * 7 5 4 9 9 C 1.33872 * 122.76430 * 269.70604 * 8 7 5 10 10 O 1.21231 * 125.39459 * 359.97438 * 9 8 7 11 11 C 1.51322 * 109.21065 * 179.84328 * 9 8 7 12 12 C 1.54232 * 103.55127 * 0.38638 * 11 9 8 13 13 C 1.33882 * 122.76627 * 89.99948 * 8 7 5 14 14 O 1.21235 * 125.39159 * 0.02562 * 13 8 7 15 15 C 1.53292 * 109.51267 * 120.12825 * 2 1 3 16 16 N 1.47165 * 108.41376 * 67.64295 * 15 2 1 17 17 C 1.36935 * 120.99578 * 230.54471 * 16 15 2 18 18 H 1.07992 * 120.00186 * 153.32389 * 17 16 15 19 19 C 1.38816 * 119.99602 * 333.33361 * 17 16 15 20 20 N 1.31616 * 120.00208 * 343.52858 * 19 17 16 21 21 Si 1.86797 * 119.99898 * 163.53345 * 19 17 16 22 22 H 1.48500 * 109.47409 * 59.99733 * 21 19 17 23 23 H 1.48501 * 109.46973 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47195 * 299.99374 * 21 19 17 25 25 C 1.47151 * 118.02621 * 50.46989 * 16 15 2 26 26 C 1.53294 * 108.41779 * 309.52979 * 25 16 15 27 27 O 1.42966 * 109.22198 * 52.28429 * 26 25 16 28 28 H 1.08997 * 109.47587 * 180.12462 * 1 2 3 29 29 H 1.09005 * 109.47135 * 300.12598 * 1 2 3 30 30 H 1.09003 * 109.47554 * 60.12280 * 1 2 3 31 31 H 1.09003 * 109.46779 * 64.87711 * 3 2 1 32 32 H 1.08998 * 109.46843 * 184.87144 * 3 2 1 33 33 H 0.97002 * 119.99524 * 359.97438 * 4 3 2 34 34 H 1.09003 * 109.47197 * 299.99758 * 7 5 4 35 35 H 1.08998 * 109.47539 * 59.99873 * 7 5 4 36 36 H 1.08996 * 110.79407 * 241.78071 * 11 9 8 37 37 H 1.08996 * 110.54992 * 118.87757 * 11 9 8 38 38 H 1.08999 * 110.60138 * 241.25803 * 12 11 9 39 39 H 1.08998 * 110.73671 * 118.36107 * 12 11 9 40 40 H 1.09007 * 109.68283 * 187.34438 * 15 2 1 41 41 H 1.09002 * 109.68326 * 307.89778 * 15 2 1 42 42 H 0.96998 * 120.00577 * 180.02562 * 20 19 17 43 43 H 1.09006 * 109.68282 * 189.78626 * 25 16 15 44 44 H 1.09005 * 109.68198 * 69.27128 * 25 16 15 45 45 H 1.08997 * 109.51621 * 172.20381 * 26 25 16 46 46 H 1.08999 * 109.51217 * 292.30900 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0420 1.4418 0.0000 4 7 1.4613 2.1664 -1.1331 5 6 1.7717 3.4622 -1.3348 6 8 2.5315 4.0287 -0.5780 7 6 1.1739 4.2076 -2.5001 8 7 1.6634 5.5884 -2.4994 9 6 1.0319 6.5807 -1.8600 10 8 0.0077 6.4649 -1.2218 11 6 1.8007 7.8690 -2.0575 12 6 2.9934 7.4466 -2.9394 13 6 2.7761 5.9631 -3.1429 14 8 3.4953 5.2299 -3.7870 15 6 2.0420 -0.7252 1.2497 16 7 1.6966 -2.1511 1.1339 17 6 1.0619 -2.8080 2.1541 18 1 0.4435 -3.6673 1.9409 19 6 1.2134 -2.3693 3.4624 20 7 2.1955 -1.5497 3.7721 21 14 0.0232 -2.9422 4.7832 22 1 0.0797 -4.4221 4.8923 23 1 0.3996 -2.3356 6.0854 24 1 -1.3554 -2.5247 4.4222 25 6 2.0521 -2.8497 -0.1115 26 6 1.5396 -2.0210 -1.2949 27 8 2.0075 -0.6763 -1.1656 28 1 -0.3634 -1.0276 0.0022 29 1 -0.3634 0.5158 0.8889 30 1 -0.3634 0.5119 -0.8911 31 1 1.7525 1.9302 0.9305 32 1 3.1285 1.4414 -0.0873 33 1 0.8534 1.7133 -1.7382 34 1 1.4635 3.7196 -3.4308 35 1 0.0875 4.2077 -2.4126 36 1 2.1498 8.2615 -1.1025 37 1 1.1852 8.6068 -2.5722 38 1 3.9358 7.6291 -2.4231 39 1 2.9724 7.9719 -3.8943 40 1 3.1241 -0.6148 1.3208 41 1 1.5704 -0.3042 2.1376 42 1 2.3016 -1.2434 4.6863 43 1 1.5871 -3.8356 -0.1249 44 1 3.1351 -2.9537 -0.1778 45 1 1.9113 -2.4477 -2.2264 46 1 0.4496 -2.0291 -1.3001 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108387543.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:07 Heat of formation + Delta-G solvation = -135.907183 kcal Electronic energy + Delta-G solvation = -30455.579754 eV Core-core repulsion = 26152.776591 eV Total energy + Delta-G solvation = -4302.803163 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.97418 -41.12017 -40.14452 -39.66998 -36.95878 -36.59074 -36.00905 -34.46299 -33.29945 -33.16736 -29.72806 -29.45453 -28.03433 -27.11353 -26.80670 -25.01354 -23.33634 -23.11690 -22.07104 -20.70645 -20.25450 -19.07267 -18.86927 -18.46341 -17.58161 -17.52462 -17.38703 -16.88495 -16.74981 -16.25813 -16.07654 -15.72250 -15.63221 -15.39667 -15.28756 -15.17161 -14.92652 -14.73274 -14.58420 -14.30247 -14.17909 -13.62105 -13.51952 -13.25125 -13.17284 -12.95159 -12.77696 -12.56033 -12.46713 -12.20599 -12.09908 -11.98815 -11.88867 -11.80932 -11.67671 -11.16964 -11.12746 -10.83815 -10.68697 -10.52123 -10.26620 -8.73856 -7.91610 -5.39075 0.49832 1.24167 1.39622 1.45064 1.47099 1.53976 1.70126 2.15955 2.46701 2.74743 3.21315 3.22899 3.26524 3.46310 3.55857 3.64072 3.88006 3.96678 3.98778 4.06249 4.09286 4.20407 4.26414 4.39067 4.43839 4.50725 4.58528 4.68593 4.74820 4.76967 4.91308 4.92804 4.93253 5.01246 5.08871 5.18069 5.23621 5.32913 5.50080 5.59274 5.74238 6.27099 6.28376 6.32412 6.34929 6.69724 7.02569 7.04773 7.73948 8.28258 9.14069 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002603 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.916831 B =10754.522193 C =11508.754777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.094 3.906 3 C 0.151 3.849 4 N -0.699 5.699 5 C 0.494 3.506 6 O -0.581 6.581 7 C 0.079 3.921 8 N -0.567 5.567 9 C 0.522 3.478 10 O -0.522 6.522 11 C -0.140 4.140 12 C -0.140 4.140 13 C 0.521 3.479 14 O -0.522 6.522 15 C 0.169 3.831 16 N -0.607 5.607 17 C -0.260 4.260 18 H 0.075 0.925 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.968 3.032 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.275 1.275 25 C 0.101 3.899 26 C 0.052 3.948 27 O -0.386 6.386 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.418 0.582 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.157 0.843 38 H 0.136 0.864 39 H 0.157 0.843 40 H -0.009 1.009 41 H 0.066 0.934 42 H 0.250 0.750 43 H 0.073 0.927 44 H 0.011 0.989 45 H 0.118 0.882 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 18.113 -18.309 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.053 3.947 3 C 0.026 3.974 4 N -0.352 5.352 5 C 0.280 3.720 6 O -0.461 6.461 7 C -0.046 4.046 8 N -0.309 5.309 9 C 0.314 3.686 10 O -0.396 6.396 11 C -0.179 4.179 12 C -0.179 4.179 13 C 0.313 3.687 14 O -0.396 6.396 15 C 0.042 3.958 16 N -0.331 5.331 17 C -0.390 4.390 18 H 0.092 0.908 19 C -0.246 4.246 20 N -0.583 5.583 21 Si 0.796 3.204 22 H -0.200 1.200 23 H -0.224 1.224 24 H -0.200 1.200 25 C -0.024 4.024 26 C -0.025 4.025 27 O -0.305 6.305 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.256 0.744 34 H 0.161 0.839 35 H 0.163 0.837 36 H 0.154 0.846 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.175 0.825 40 H 0.009 0.991 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.092 0.908 44 H 0.029 0.971 45 H 0.136 0.864 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.797 18.145 -17.755 25.669 hybrid contribution -0.431 -1.368 1.424 2.021 sum -4.228 16.778 -16.331 23.792 Atomic orbital electron populations 1.22113 0.93735 1.03025 1.02188 1.22177 0.94797 0.90298 0.87465 1.21007 0.97729 0.89262 0.89386 1.45725 1.48739 1.10518 1.30251 1.21390 0.81229 0.82470 0.86897 1.90695 1.37895 1.68696 1.48776 1.21662 1.02735 0.81623 0.98577 1.46613 1.26625 1.09767 1.47913 1.21792 0.83521 0.88081 0.75235 1.90771 1.24350 1.85840 1.38668 1.22590 0.96361 0.94020 1.04933 1.22593 1.01720 0.88219 1.05351 1.21809 0.77748 0.93608 0.75514 1.90774 1.47444 1.61560 1.39871 1.21033 0.95299 0.84487 0.94997 1.44238 1.68679 1.05462 1.14704 1.19479 1.21093 1.12421 0.86005 0.90768 1.25826 0.98756 1.00709 0.99287 1.70174 1.31074 1.38539 1.18525 0.85336 0.79053 0.78049 0.78000 1.20016 1.22398 1.20039 1.21830 0.97014 0.96421 0.87155 1.23122 0.99207 0.81671 0.98483 1.87839 1.73288 1.26574 1.42825 0.91799 0.92694 0.90116 0.91177 0.92801 0.74421 0.83859 0.83702 0.84572 0.82520 0.84605 0.82488 0.99139 0.91561 0.94074 0.90840 0.97089 0.86422 0.91899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 7.86 71.98 0.57 -4.41 16 2 C 0.09 3.49 0.78 -10.70 -0.01 3.49 16 3 C 0.15 5.40 4.85 86.38 0.42 5.82 16 4 N -0.70 -19.57 5.19 -463.06 -2.40 -21.98 16 5 C 0.49 14.55 7.90 87.66 0.69 15.25 16 6 O -0.58 -22.22 16.43 -3.06 -0.05 -22.27 16 7 C 0.08 1.59 6.04 85.63 0.52 2.11 16 8 N -0.57 -11.34 2.04 -760.72 -1.55 -12.90 16 9 C 0.52 9.75 8.08 88.00 0.71 10.46 16 10 O -0.52 -13.84 17.47 -2.88 -0.05 -13.89 16 11 C -0.14 -0.91 7.03 30.46 0.21 -0.70 16 12 C -0.14 -0.91 7.03 30.46 0.21 -0.70 16 13 C 0.52 9.80 8.08 87.99 0.71 10.51 16 14 O -0.52 -13.97 17.48 -2.89 -0.05 -14.02 16 15 C 0.17 8.22 4.11 86.35 0.35 8.58 16 16 N -0.61 -29.99 2.57 -697.50 -1.79 -31.78 16 17 C -0.26 -13.94 9.65 84.03 0.81 -13.13 16 18 H 0.07 3.80 7.88 -2.91 -0.02 3.78 16 19 C -0.05 -2.79 4.95 84.86 0.42 -2.36 16 20 N -0.94 -55.77 11.14 21.65 0.24 -55.53 16 21 Si 0.97 44.42 29.58 68.60 2.03 46.45 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 C 0.10 4.09 6.73 86.35 0.58 4.67 16 26 C 0.05 1.67 6.60 72.08 0.48 2.14 16 27 O -0.39 -13.66 10.17 -148.98 -1.52 -15.17 16 28 H 0.06 2.24 6.12 -2.39 -0.01 2.23 16 29 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.08 1.98 6.59 -2.39 -0.02 1.96 16 31 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.42 9.11 7.00 -92.71 -0.65 8.46 16 34 H 0.14 2.30 7.83 -2.39 -0.02 2.28 16 35 H 0.15 2.26 7.82 -2.39 -0.02 2.24 16 36 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.16 -0.03 8.14 -2.39 -0.02 -0.05 16 38 H 0.14 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.16 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 41 H 0.07 3.61 6.16 -2.39 -0.01 3.60 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.07 2.75 7.96 -2.38 -0.02 2.74 16 44 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 45 H 0.12 2.93 8.14 -2.39 -0.02 2.91 16 46 H 0.06 1.87 6.26 -2.39 -0.01 1.85 16 Total: -1.00 -83.82 376.42 1.90 -81.92 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.37 Total: 17.45 kcal Atomic # 6 Polarization: 35.04 SS G_CDS: 6.68 Total: 41.72 kcal Atomic # 7 Polarization: -116.68 SS G_CDS: -5.51 Total: -122.18 kcal Atomic # 8 Polarization: -63.69 SS G_CDS: -1.67 Total: -65.36 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -83.82 1.90 -81.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108387543.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.985 kcal (2) G-P(sol) polarization free energy of solvation -83.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds