Wall clock time and date at job start Sat Apr 11 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.51002 * 2 1 4 4 N 1.46502 * 109.47455 * 304.99800 * 3 2 1 5 5 C 1.34776 * 120.00071 * 179.97438 * 4 3 2 6 6 O 1.21278 * 119.99935 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00015 * 180.02562 * 5 4 3 8 8 C 1.52998 * 109.47081 * 180.02562 * 7 5 4 9 9 H 1.08996 * 110.54434 * 307.84955 * 8 7 5 10 10 C 1.54232 * 110.60508 * 184.99981 * 8 7 5 11 11 C 1.51310 * 103.69583 * 241.41193 * 10 8 7 12 12 O 1.21227 * 125.39204 * 180.02562 * 11 10 8 13 13 N 1.34217 * 109.01791 * 0.12914 * 11 10 8 14 14 C 1.33884 * 114.52936 * 359.85900 * 13 11 10 15 15 O 1.21220 * 125.40005 * 180.10994 * 14 13 11 16 16 C 1.53293 * 109.51420 * 120.10241 * 2 1 3 17 17 N 1.47153 * 108.38367 * 67.67183 * 16 2 1 18 18 C 1.36937 * 120.98233 * 230.55762 * 17 16 2 19 19 H 1.07996 * 119.99854 * 26.56785 * 18 17 16 20 20 C 1.38812 * 119.99714 * 206.57363 * 18 17 16 21 21 N 1.31611 * 120.00399 * 17.02315 * 20 18 17 22 22 Si 1.86802 * 119.99689 * 197.02467 * 20 18 17 23 23 H 1.48500 * 109.47377 * 94.14889 * 22 20 18 24 24 H 1.48496 * 109.47356 * 214.15426 * 22 20 18 25 25 H 1.48506 * 109.47390 * 334.15232 * 22 20 18 26 26 C 1.47152 * 118.03532 * 50.53477 * 17 16 2 27 27 C 1.53292 * 108.38578 * 309.46520 * 26 17 16 28 28 O 1.42960 * 109.51203 * 239.90328 * 2 1 3 29 29 H 1.08997 * 109.46926 * 59.99534 * 1 2 3 30 30 H 1.08995 * 109.46851 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46718 * 299.99776 * 1 2 3 32 32 H 1.09010 * 109.47151 * 185.00074 * 3 2 1 33 33 H 1.08996 * 109.47290 * 65.00442 * 3 2 1 34 34 H 0.97002 * 119.99858 * 0.02562 * 4 3 2 35 35 H 1.09010 * 109.46752 * 60.00233 * 7 5 4 36 36 H 1.08996 * 109.47417 * 300.00766 * 7 5 4 37 37 H 1.09002 * 110.60280 * 0.02562 * 10 8 7 38 38 H 1.09000 * 110.60444 * 122.81007 * 10 8 7 39 39 H 0.96999 * 122.71692 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.68186 * 187.39717 * 16 2 1 41 41 H 1.09004 * 109.67922 * 307.91025 * 16 2 1 42 42 H 0.96997 * 120.00464 * 180.02562 * 21 20 18 43 43 H 1.09006 * 109.67879 * 69.18960 * 26 17 16 44 44 H 1.09002 * 109.68154 * 189.73518 * 26 17 16 45 45 H 1.09004 * 109.51073 * 172.22465 * 27 26 17 46 46 H 1.08998 * 109.51057 * 292.37819 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0410 1.4422 0.0000 4 7 1.4574 2.1671 -1.1314 5 6 1.7665 3.4634 -1.3328 6 8 2.5280 4.0296 -0.5777 7 6 1.1657 4.2093 -2.4964 8 6 1.6768 5.6514 -2.4964 9 1 1.5213 6.1123 -1.5210 10 6 0.9831 6.4731 -3.6019 11 6 2.1237 6.9012 -4.4993 12 8 2.0139 7.5740 -5.5017 13 7 3.2736 6.4142 -4.0074 14 6 3.1387 5.6982 -2.8842 15 8 4.0442 5.1712 -2.2744 16 6 2.0421 -0.7247 1.2500 17 7 1.6971 -2.1505 1.1339 18 6 1.0620 -2.8074 2.1538 19 1 0.4368 -2.2589 2.8427 20 6 1.2219 -4.1782 2.3023 21 7 2.2175 -4.7937 1.7004 22 14 0.0240 -5.1495 3.3563 23 1 -1.0513 -5.7075 2.4974 24 1 0.7448 -6.2591 4.0305 25 1 -0.5741 -4.2542 4.3791 26 6 2.0543 -2.8493 -0.1108 27 6 1.5416 -2.0212 -1.2945 28 8 2.0075 -0.6757 -1.1658 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1274 1.4427 -0.0896 33 1 1.7531 1.9297 0.9314 34 1 0.8480 1.7143 -1.7352 35 1 0.0793 4.2084 -2.4066 36 1 1.4535 3.7221 -3.4280 37 1 0.2735 5.8546 -4.1515 38 1 0.4824 7.3428 -3.1764 39 1 4.1324 6.5699 -4.4305 40 1 3.1241 -0.6134 1.3215 41 1 1.5703 -0.3033 2.1377 42 1 2.3291 -5.7516 1.8038 43 1 3.1375 -2.9520 -0.1763 44 1 1.5901 -3.8355 -0.1243 45 1 1.9141 -2.4479 -2.2259 46 1 0.4517 -2.0293 -1.2997 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108447464.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:17 Heat of formation + Delta-G solvation = -119.520214 kcal Electronic energy + Delta-G solvation = -30026.492118 eV Core-core repulsion = 25724.399547 eV Total energy + Delta-G solvation = -4302.092571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.17775 -39.88684 -39.03521 -38.59771 -36.22823 -35.08828 -34.31926 -33.91032 -32.07561 -30.92842 -29.27209 -28.18761 -26.66266 -25.86333 -24.85655 -23.16694 -22.20280 -21.68101 -21.04153 -20.21964 -18.73296 -18.26560 -17.59626 -16.99855 -16.77255 -16.52464 -16.08155 -15.81177 -15.40308 -15.07851 -14.93444 -14.55397 -14.45226 -14.22233 -14.09244 -13.89924 -13.64446 -13.37939 -13.25010 -12.91636 -12.80042 -12.70768 -12.29164 -11.97411 -11.76291 -11.65972 -11.15171 -11.12160 -11.04041 -10.86622 -10.69125 -10.64973 -10.44099 -10.30220 -10.25602 -10.01385 -9.85812 -9.52275 -9.07369 -8.92517 -8.56127 -6.76763 -5.87161 -3.30899 1.14175 2.34686 2.39088 2.66304 3.10657 3.31371 3.38871 3.40334 3.64032 3.78282 3.93783 4.18773 4.21107 4.40278 4.62741 4.82971 4.85823 5.01840 5.08742 5.12217 5.28776 5.33038 5.36841 5.40985 5.52695 5.60870 5.81684 5.95936 6.01760 6.05868 6.11304 6.25014 6.32920 6.37278 6.46903 6.54047 6.64233 6.74455 6.92409 7.08408 7.48718 7.52102 7.55013 7.68564 7.85556 8.26535 8.30418 9.08466 9.71222 10.28489 11.20827 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.032839 B = 0.002092 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.442471 B =13383.787363 C =13428.673811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.088 3.912 3 C 0.139 3.861 4 N -0.719 5.719 5 C 0.502 3.498 6 O -0.521 6.521 7 C -0.129 4.129 8 C -0.109 4.109 9 H 0.134 0.866 10 C -0.156 4.156 11 C 0.532 3.468 12 O -0.489 6.489 13 N -0.686 5.686 14 C 0.524 3.476 15 O -0.442 6.442 16 C 0.128 3.872 17 N -0.590 5.590 18 C -0.254 4.254 19 H 0.069 0.931 20 C 0.002 3.998 21 N -0.902 5.902 22 Si 0.904 3.096 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.140 3.860 27 C 0.036 3.964 28 O -0.384 6.384 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.401 0.599 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.124 0.876 38 H 0.125 0.875 39 H 0.414 0.586 40 H 0.029 0.971 41 H 0.063 0.937 42 H 0.255 0.745 43 H 0.027 0.973 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.798 19.618 -11.860 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.047 3.953 3 C 0.015 3.985 4 N -0.371 5.371 5 C 0.286 3.714 6 O -0.396 6.396 7 C -0.169 4.169 8 C -0.130 4.130 9 H 0.152 0.848 10 C -0.196 4.196 11 C 0.320 3.680 12 O -0.360 6.360 13 N -0.353 5.353 14 C 0.309 3.691 15 O -0.309 6.309 16 C 0.000 4.000 17 N -0.313 5.313 18 C -0.383 4.383 19 H 0.087 0.913 20 C -0.197 4.197 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.203 1.203 26 C 0.014 3.986 27 C -0.042 4.042 28 O -0.303 6.303 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.237 0.763 35 H 0.131 0.869 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.253 0.747 40 H 0.046 0.954 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.045 0.955 44 H 0.111 0.889 45 H 0.097 0.903 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -4.784 19.936 -11.490 23.502 hybrid contribution -0.508 -1.024 0.162 1.154 sum -5.292 18.912 -11.328 22.671 Atomic orbital electron populations 1.22238 0.95635 1.03633 1.00732 1.22190 0.93517 0.90456 0.89159 1.21329 0.98944 0.89307 0.88897 1.45942 1.49122 1.10916 1.31164 1.20331 0.82082 0.82393 0.86553 1.90791 1.34504 1.67648 1.46691 1.21605 1.03006 0.92972 0.99318 1.21829 0.91804 0.97246 1.02162 0.84781 1.22615 0.97689 1.03066 0.96223 1.20835 0.85340 0.77371 0.84493 1.90823 1.85343 1.35610 1.24268 1.44960 1.12569 1.50214 1.27542 1.20686 0.92328 0.76908 0.79165 1.90917 1.45917 1.41216 1.52817 1.21428 0.97527 0.86873 0.94133 1.44014 1.68580 1.04417 1.14320 1.19186 1.20879 0.90699 1.07509 0.91349 1.25053 0.97212 0.98039 0.99352 1.70034 1.28504 1.09251 1.46813 0.86243 0.80591 0.79830 0.79915 1.21448 1.21721 1.20343 1.21424 0.97954 0.96116 0.83074 1.23348 0.98200 0.82564 1.00070 1.87832 1.73032 1.26571 1.42879 0.93601 0.90396 0.92070 0.90795 0.90244 0.76331 0.86888 0.88356 0.85781 0.85728 0.74683 0.95363 0.91835 0.93509 0.95464 0.88915 0.90252 0.93653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 7.87 37.16 0.29 -2.12 16 2 C 0.09 1.45 0.78 -90.47 -0.07 1.38 16 3 C 0.14 2.03 4.85 -4.04 -0.02 2.01 16 4 N -0.72 -8.41 5.19 -60.29 -0.31 -8.73 16 5 C 0.50 5.75 7.52 -10.98 -0.08 5.67 16 6 O -0.52 -8.13 13.97 -15.62 -0.22 -8.35 16 7 C -0.13 -0.78 5.01 -27.88 -0.14 -0.92 16 8 C -0.11 -0.66 2.68 -90.83 -0.24 -0.90 16 9 H 0.13 0.81 7.89 -51.93 -0.41 0.40 16 10 C -0.16 -0.53 6.66 -26.94 -0.18 -0.71 16 11 C 0.53 3.63 8.57 -10.94 -0.09 3.54 16 12 O -0.49 -5.01 18.02 5.60 0.10 -4.91 16 13 N -0.69 -4.85 5.49 -11.32 -0.06 -4.92 16 14 C 0.52 4.89 7.72 -11.08 -0.09 4.80 16 15 O -0.44 -6.32 15.90 -15.57 -0.25 -6.57 16 16 C 0.13 2.59 5.40 -3.53 -0.02 2.57 16 17 N -0.59 -14.12 2.57 -171.83 -0.44 -14.57 16 18 C -0.25 -6.64 9.64 -15.06 -0.15 -6.79 16 19 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 20 C 0.00 0.06 4.94 -17.43 -0.09 -0.02 16 21 N -0.90 -25.50 11.17 55.49 0.62 -24.88 16 22 Si 0.90 21.00 29.59 -169.99 -5.03 15.97 16 23 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.14 3.23 5.44 -3.53 -0.02 3.21 16 27 C 0.04 0.66 6.60 37.31 0.25 0.90 16 28 O -0.38 -6.88 10.18 -35.23 -0.36 -7.23 16 29 H 0.05 0.54 6.58 -51.93 -0.34 0.20 16 30 H 0.08 1.34 6.11 -51.93 -0.32 1.03 16 31 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.40 3.96 6.99 -40.82 -0.29 3.68 16 35 H 0.11 0.32 8.14 -51.92 -0.42 -0.10 16 36 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 37 H 0.12 0.18 7.74 -51.93 -0.40 -0.22 16 38 H 0.12 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.41 2.52 8.96 -40.82 -0.37 2.15 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 1.23 7.96 -51.93 -0.41 0.82 16 42 H 0.25 6.97 8.31 -40.82 -0.34 6.64 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.35 6.17 -51.93 -0.32 2.03 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 46 H 0.05 0.80 6.25 -51.93 -0.32 0.48 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -35.56 371.20 -7.53 -43.09 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.53 Total: 2.90 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: -0.65 Total: 12.60 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: -0.20 Total: -53.09 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -0.72 Total: -27.07 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.03 Total: 15.97 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.56 -7.53 -43.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108447464.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.430 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds