Wall clock time and date at job start Sat Apr 11 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46891 * 110.99722 * 294.29943 * 13 12 10 15 15 C 1.53239 * 109.34117 * 172.74960 * 14 13 12 16 16 N 1.47080 * 108.52299 * 53.82517 * 15 14 13 17 17 C 1.34777 * 120.87786 * 128.79482 * 16 15 14 18 18 O 1.21281 * 119.99697 * 180.02562 * 17 16 15 19 19 C 1.50695 * 120.00153 * 0.02609 * 17 16 15 20 20 C 1.53004 * 109.46840 * 179.97438 * 19 17 16 21 21 H 1.08998 * 110.76911 * 305.70149 * 20 19 17 22 22 C 1.54573 * 110.86637 * 69.22547 * 20 19 17 23 23 O 1.46162 * 104.28480 * 144.85514 * 22 20 19 24 24 C 1.34063 * 110.03050 * 329.67582 * 23 22 20 25 25 O 1.20823 * 125.09301 * 200.64550 * 24 23 22 26 26 C 1.51326 * 109.81060 * 20.68075 * 24 23 22 27 27 C 1.47079 * 118.23834 * 308.82388 * 16 15 14 28 28 C 1.46898 * 111.00019 * 169.99709 * 13 12 10 29 29 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 31 31 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 32 32 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 33 33 H 1.09001 * 109.49407 * 292.70541 * 14 13 12 34 34 H 1.09005 * 109.49846 * 52.78687 * 14 13 12 35 35 H 1.09005 * 109.62545 * 294.11786 * 15 14 13 36 36 H 1.08998 * 109.63186 * 173.54148 * 15 14 13 37 37 H 1.08994 * 109.47362 * 299.99828 * 19 17 16 38 38 H 1.09004 * 109.46880 * 60.00249 * 19 17 16 39 39 H 1.08996 * 110.43753 * 263.74818 * 22 20 19 40 40 H 1.08999 * 110.43977 * 26.27718 * 22 20 19 41 41 H 1.09001 * 110.36649 * 238.84582 * 26 24 23 42 42 H 1.08998 * 110.37019 * 116.52466 * 26 24 23 43 43 H 1.09007 * 109.62404 * 291.46984 * 27 16 15 44 44 H 1.08994 * 109.62835 * 170.89324 * 27 16 15 45 45 H 1.09000 * 109.49424 * 307.21954 * 28 13 12 46 46 H 1.08999 * 109.48867 * 67.29022 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0503 -3.7556 0.0246 14 6 5.6880 -4.4372 1.2744 15 6 6.0542 -5.9213 1.1677 16 7 7.4718 -6.0268 0.7901 17 6 8.3188 -6.8048 1.4929 18 8 9.4848 -6.8796 1.1677 19 6 7.8170 -7.5815 2.6828 20 6 8.9712 -8.3770 3.2960 21 1 9.4524 -9.0021 2.5438 22 6 9.9961 -7.4331 3.9651 23 8 10.4676 -8.1800 5.1297 24 6 9.4966 -8.9861 5.5821 25 8 9.4416 -9.4497 6.6965 26 6 8.4803 -9.2291 4.4876 27 6 7.9407 -5.2604 -0.3743 28 6 7.5002 -3.8023 -0.2068 29 1 -0.4850 0.8401 -0.0004 30 1 3.8648 -0.3633 0.0059 31 1 5.9281 -1.8591 -0.8704 32 1 5.9199 -1.8544 0.9095 33 1 6.2319 -3.9872 2.1050 34 1 4.6159 -4.3384 1.4451 35 1 5.4361 -6.3971 0.4063 36 1 5.8943 -6.4081 2.1298 37 1 7.4166 -6.8910 3.4249 38 1 7.0323 -8.2677 2.3641 39 1 10.8207 -7.2224 3.2841 40 1 9.5133 -6.5073 4.2780 41 1 7.4918 -8.8998 4.8078 42 1 8.4599 -10.2846 4.2163 43 1 7.5039 -5.6727 -1.2840 44 1 9.0280 -5.3101 -0.4317 45 1 7.7425 -3.2430 -1.1105 46 1 8.0187 -3.3611 0.6444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112767310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:22 Heat of formation + Delta-G solvation = -130.777310 kcal Electronic energy + Delta-G solvation = -29445.505692 eV Core-core repulsion = 25142.924976 eV Total energy + Delta-G solvation = -4302.580715 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.45832 -40.39756 -38.97032 -37.89011 -37.45312 -34.75524 -34.72733 -33.92835 -31.76991 -31.46492 -29.73213 -28.88005 -27.59198 -25.81675 -23.89609 -23.82695 -22.25456 -21.68177 -20.97442 -19.49910 -19.16323 -18.42004 -17.84699 -17.19215 -17.10956 -16.65740 -16.27246 -15.99445 -15.69345 -15.27775 -15.17491 -14.86988 -14.64048 -14.38252 -14.19254 -14.03254 -13.97545 -13.60466 -13.31487 -13.22546 -12.90209 -12.61430 -12.54626 -12.34642 -12.00395 -11.85400 -11.77327 -11.72653 -11.43513 -11.36602 -11.33406 -11.01444 -10.98488 -10.66825 -10.61475 -10.05986 -10.05607 -9.62707 -9.08593 -8.60686 -8.27298 -8.12895 -6.39195 -3.90972 1.67994 2.27298 2.62497 2.88804 2.95514 3.00570 3.09434 3.49887 3.61155 3.67459 3.74875 3.99261 4.02839 4.14864 4.40083 4.53868 4.66168 4.77427 4.82040 4.84752 4.89001 5.00931 5.04971 5.09597 5.11541 5.12761 5.22415 5.27618 5.33324 5.50548 5.51826 5.56864 5.63434 5.68530 5.81057 5.93700 5.97705 6.25821 6.36082 6.88778 7.07408 7.08688 7.15150 7.49351 7.81504 8.05279 8.50755 8.86283 9.33508 9.72691 10.73607 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.002059 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.664216 B =13597.619648 C =14181.810642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.042 3.958 3 Si 0.880 3.120 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.270 1.270 7 C -0.306 4.306 8 H 0.120 0.880 9 N -0.589 5.589 10 C 0.451 3.549 11 O -0.561 6.561 12 C 0.044 3.956 13 N -0.515 5.515 14 C 0.037 3.963 15 C 0.112 3.888 16 N -0.610 5.610 17 C 0.514 3.486 18 O -0.547 6.547 19 C -0.135 4.135 20 C -0.106 4.106 21 H 0.109 0.891 22 C 0.063 3.937 23 O -0.349 6.349 24 C 0.483 3.517 25 O -0.460 6.460 26 C -0.185 4.185 27 C 0.118 3.882 28 C 0.040 3.960 29 H 0.274 0.726 30 H 0.370 0.630 31 H 0.092 0.908 32 H 0.049 0.951 33 H 0.028 0.972 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.084 0.916 41 H 0.116 0.884 42 H 0.118 0.882 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.134 -11.514 3.535 21.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.161 4.161 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.434 4.434 8 H 0.138 0.862 9 N -0.228 5.228 10 C 0.236 3.764 11 O -0.444 6.444 12 C -0.088 4.088 13 N -0.240 5.240 14 C -0.092 4.092 15 C -0.011 4.011 16 N -0.343 5.343 17 C 0.302 3.698 18 O -0.426 6.426 19 C -0.175 4.175 20 C -0.125 4.125 21 H 0.127 0.873 22 C -0.011 4.011 23 O -0.266 6.266 24 C 0.324 3.676 25 O -0.344 6.344 26 C -0.223 4.223 27 C -0.004 4.004 28 C -0.089 4.089 29 H 0.085 0.915 30 H 0.203 0.797 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.136 0.864 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.119 0.881 38 H 0.126 0.874 39 H 0.140 0.860 40 H 0.102 0.898 41 H 0.134 0.866 42 H 0.136 0.864 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 18.076 -12.570 3.588 22.307 hybrid contribution 0.641 2.059 0.437 2.200 sum 18.718 -10.511 4.025 21.841 Atomic orbital electron populations 1.69617 1.05651 1.27597 1.48996 1.25053 0.95502 0.98028 0.97556 0.86675 0.79719 0.84048 0.78947 1.19554 1.20152 1.19569 1.19413 0.79138 0.96620 1.48279 0.86208 1.42226 1.07594 1.06171 1.66777 1.19596 0.87966 0.84573 0.84216 1.90513 1.69313 1.30735 1.53794 1.21887 0.95692 0.89398 1.01781 1.61486 1.11570 1.15127 1.35774 1.22671 1.04328 0.92741 0.89418 1.21970 0.80192 0.97457 1.01443 1.48275 1.10290 1.45560 1.30170 1.20511 0.85791 0.79511 0.83966 1.90686 1.17131 1.64985 1.69789 1.21772 0.99077 0.99865 0.96798 1.22272 0.95829 0.97042 0.97347 0.87254 1.24373 0.99434 0.93435 0.83858 1.87092 1.39709 1.53628 1.46152 1.23094 0.80759 0.76119 0.87660 1.90730 1.73623 1.49560 1.20463 1.23003 1.00898 1.04112 0.94325 1.21713 1.00586 0.90110 0.88031 1.22515 0.88314 0.96586 1.01439 0.91534 0.79695 0.89011 0.93299 0.95379 0.86441 0.89636 0.89558 0.88060 0.87381 0.85984 0.89807 0.86580 0.86429 0.90425 0.88725 0.89413 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.79 13.96 55.50 0.77 -24.02 16 2 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 18.55 27.74 -169.99 -4.72 13.83 16 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 6 H -0.27 -5.15 6.51 56.52 0.37 -4.78 16 7 C -0.31 -8.20 10.16 -14.93 -0.15 -8.35 16 8 H 0.12 3.68 7.39 -52.49 -0.39 3.29 16 9 N -0.59 -13.09 5.09 -10.96 -0.06 -13.14 16 10 C 0.45 9.30 7.44 -10.98 -0.08 9.22 16 11 O -0.56 -13.52 13.90 5.55 0.08 -13.44 16 12 C 0.04 0.65 5.45 -4.97 -0.03 0.62 16 13 N -0.51 -6.99 4.37 -235.77 -1.03 -8.02 16 14 C 0.04 0.46 5.25 -3.71 -0.02 0.44 16 15 C 0.11 1.07 6.50 -3.60 -0.02 1.04 16 16 N -0.61 -5.79 3.01 -172.47 -0.52 -6.31 16 17 C 0.51 4.56 7.52 -10.99 -0.08 4.48 16 18 O -0.55 -6.28 14.41 5.56 0.08 -6.20 16 19 C -0.14 -0.71 3.37 -27.88 -0.09 -0.81 16 20 C -0.11 -0.59 2.75 -89.01 -0.24 -0.83 16 21 H 0.11 0.65 7.97 -51.93 -0.41 0.23 16 22 C 0.06 0.44 6.67 37.98 0.25 0.69 16 23 O -0.35 -3.44 11.06 -38.47 -0.43 -3.86 16 24 C 0.48 4.66 8.58 36.31 0.31 4.98 16 25 O -0.46 -6.16 18.00 -18.41 -0.33 -6.49 16 26 C -0.19 -0.98 6.52 -26.79 -0.17 -1.15 16 27 C 0.12 1.16 6.60 -3.61 -0.02 1.14 16 28 C 0.04 0.42 5.62 -3.71 -0.02 0.40 16 29 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 30 H 0.37 7.24 5.76 -40.82 -0.24 7.00 16 31 H 0.09 1.18 7.97 -51.93 -0.41 0.77 16 32 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 33 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.12 1.87 5.76 -51.93 -0.30 1.57 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 0.56 6.02 -51.93 -0.31 0.25 16 37 H 0.10 0.41 7.53 -51.93 -0.39 0.02 16 38 H 0.11 0.39 8.00 -51.93 -0.42 -0.02 16 39 H 0.12 0.89 7.67 -51.93 -0.40 0.50 16 40 H 0.08 0.51 7.82 -51.93 -0.41 0.10 16 41 H 0.12 0.44 7.80 -51.93 -0.40 0.03 16 42 H 0.12 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.78 8.14 -51.92 -0.42 0.36 16 44 H 0.09 0.92 7.06 -51.93 -0.37 0.56 16 45 H 0.09 0.80 7.99 -51.93 -0.41 0.39 16 46 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 372.08 15.07 5.61 5.61 Total: -1.00 -34.61 372.08 -7.58 -42.19 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.56 Total: 6.98 kcal Atomic # 6 Polarization: 13.35 SS G_CDS: -0.47 Total: 12.88 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: -0.83 Total: -51.49 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.60 Total: -30.00 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.72 Total: 13.83 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.61 -7.58 -42.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112767310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.591 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds