Wall clock time and date at job start Sat Apr 11 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99582 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99661 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00179 * 3 2 1 7 7 C 1.38956 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99671 * 180.27617 * 7 2 1 10 10 C 1.34783 * 119.99804 * 179.72159 * 9 7 2 11 11 O 1.21293 * 119.99741 * 359.97438 * 10 9 7 12 12 C 1.50702 * 120.00004 * 180.02562 * 10 9 7 13 13 N 1.46902 * 109.47027 * 180.02562 * 12 10 9 14 14 C 1.46891 * 110.99722 * 294.29943 * 13 12 10 15 15 C 1.53239 * 109.34117 * 172.74960 * 14 13 12 16 16 N 1.47080 * 108.52299 * 53.82517 * 15 14 13 17 17 C 1.34777 * 120.87786 * 128.79482 * 16 15 14 18 18 O 1.21281 * 119.99697 * 180.02562 * 17 16 15 19 19 C 1.50695 * 120.00153 * 0.02609 * 17 16 15 20 20 C 1.53004 * 109.46840 * 179.97438 * 19 17 16 21 21 H 1.08998 * 110.76911 * 305.70149 * 20 19 17 22 22 C 1.54573 * 110.86637 * 69.22547 * 20 19 17 23 23 O 1.46162 * 104.28480 * 144.85514 * 22 20 19 24 24 C 1.34063 * 110.03050 * 329.67582 * 23 22 20 25 25 O 1.20823 * 125.09301 * 200.64550 * 24 23 22 26 26 C 1.51326 * 109.81060 * 20.68075 * 24 23 22 27 27 C 1.47079 * 118.23834 * 308.82388 * 16 15 14 28 28 C 1.46898 * 111.00019 * 169.99709 * 13 12 10 29 29 H 0.97005 * 120.00019 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00481 * 359.72547 * 9 7 2 31 31 H 1.09004 * 109.46965 * 300.00192 * 12 10 9 32 32 H 1.08994 * 109.46990 * 60.00046 * 12 10 9 33 33 H 1.09001 * 109.49407 * 292.70541 * 14 13 12 34 34 H 1.09005 * 109.49846 * 52.78687 * 14 13 12 35 35 H 1.09005 * 109.62545 * 294.11786 * 15 14 13 36 36 H 1.08998 * 109.63186 * 173.54148 * 15 14 13 37 37 H 1.08994 * 109.47362 * 299.99828 * 19 17 16 38 38 H 1.09004 * 109.46880 * 60.00249 * 19 17 16 39 39 H 1.08996 * 110.43753 * 263.74818 * 22 20 19 40 40 H 1.08999 * 110.43977 * 26.27718 * 22 20 19 41 41 H 1.09001 * 110.36649 * 238.84582 * 26 24 23 42 42 H 1.08998 * 110.37019 * 116.52466 * 26 24 23 43 43 H 1.09007 * 109.62404 * 291.46984 * 27 16 15 44 44 H 1.08994 * 109.62835 * 170.89324 * 27 16 15 45 45 H 1.09000 * 109.49424 * 307.21954 * 28 13 12 46 46 H 1.08999 * 109.48867 * 67.29022 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0463 -1.4002 5 1 1.4456 2.6527 0.6999 6 1 3.5456 1.4402 0.7000 7 6 2.0089 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0014 9 7 3.3798 -1.2034 0.0063 10 6 4.0537 -2.3706 0.0125 11 8 3.4472 -3.4210 0.0134 12 6 5.5607 -2.3706 0.0193 13 7 6.0503 -3.7556 0.0246 14 6 5.6880 -4.4372 1.2744 15 6 6.0542 -5.9213 1.1677 16 7 7.4718 -6.0268 0.7901 17 6 8.3188 -6.8048 1.4929 18 8 9.4848 -6.8796 1.1677 19 6 7.8170 -7.5815 2.6828 20 6 8.9712 -8.3770 3.2960 21 1 9.4524 -9.0021 2.5438 22 6 9.9961 -7.4331 3.9651 23 8 10.4676 -8.1800 5.1297 24 6 9.4966 -8.9861 5.5821 25 8 9.4416 -9.4497 6.6965 26 6 8.4803 -9.2291 4.4876 27 6 7.9407 -5.2604 -0.3743 28 6 7.5002 -3.8023 -0.2068 29 1 -0.4850 0.8401 -0.0004 30 1 3.8648 -0.3633 0.0059 31 1 5.9281 -1.8591 -0.8704 32 1 5.9199 -1.8544 0.9095 33 1 6.2319 -3.9872 2.1050 34 1 4.6159 -4.3384 1.4451 35 1 5.4361 -6.3971 0.4063 36 1 5.8943 -6.4081 2.1298 37 1 7.4166 -6.8910 3.4249 38 1 7.0323 -8.2677 2.3641 39 1 10.8207 -7.2224 3.2841 40 1 9.5133 -6.5073 4.2780 41 1 7.4918 -8.8998 4.8078 42 1 8.4599 -10.2846 4.2163 43 1 7.5039 -5.6727 -1.2840 44 1 9.0280 -5.3101 -0.4317 45 1 7.7425 -3.2430 -1.1105 46 1 8.0187 -3.3611 0.6444 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112767310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:22 Heat of formation + Delta-G solvation = -157.385425 kcal Electronic energy + Delta-G solvation = -29446.659506 eV Core-core repulsion = 25142.924976 eV Total energy + Delta-G solvation = -4303.734530 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11090 -41.21251 -40.33953 -38.84540 -38.43940 -36.06744 -35.41565 -35.28307 -33.71570 -32.26689 -30.57328 -29.69121 -28.28522 -27.15182 -25.26008 -24.71490 -22.96913 -22.31527 -21.68438 -21.24339 -20.23161 -19.84631 -18.55030 -17.92480 -17.81465 -17.69001 -17.30276 -16.85543 -16.77582 -16.42659 -16.33488 -15.93291 -15.60398 -15.48719 -15.13510 -14.95898 -14.94608 -14.59223 -14.40171 -14.30215 -14.00368 -13.92490 -13.36813 -13.27673 -13.03580 -12.88762 -12.75788 -12.42865 -12.37879 -12.23943 -12.20565 -12.16748 -12.10717 -11.95270 -11.54856 -11.43596 -11.34204 -10.75879 -10.38286 -10.20527 -9.73636 -9.18584 -8.38696 -5.98637 0.97881 1.31404 1.36881 1.45355 1.62142 1.93466 1.99468 2.24514 2.26326 2.62171 2.95398 3.15838 3.18242 3.23968 3.51803 3.66220 3.86014 3.97639 4.02380 4.12705 4.19378 4.26964 4.32196 4.37302 4.41991 4.48534 4.51931 4.53775 4.62267 4.65686 4.72343 4.78580 4.84321 4.90709 4.97782 5.09430 5.11437 5.45238 5.55174 5.73569 5.86996 6.01290 6.16228 6.36670 6.43661 6.62461 6.91953 7.14069 7.43677 8.00052 8.78613 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.002059 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.664216 B =13597.619648 C =14181.810642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.017 4.017 3 Si 0.962 3.038 4 H -0.259 1.259 5 H -0.279 1.279 6 H -0.231 1.231 7 C -0.322 4.322 8 H 0.059 0.941 9 N -0.594 5.594 10 C 0.453 3.547 11 O -0.600 6.600 12 C 0.055 3.945 13 N -0.536 5.536 14 C 0.037 3.963 15 C 0.120 3.880 16 N -0.612 5.612 17 C 0.513 3.487 18 O -0.575 6.575 19 C -0.131 4.131 20 C -0.096 4.096 21 H 0.107 0.893 22 C 0.059 3.941 23 O -0.373 6.373 24 C 0.479 3.521 25 O -0.509 6.509 26 C -0.169 4.169 27 C 0.118 3.882 28 C 0.047 3.953 29 H 0.278 0.722 30 H 0.388 0.612 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.040 0.960 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.115 0.885 40 H 0.095 0.905 41 H 0.140 0.860 42 H 0.137 0.863 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.103 0.897 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.437 -10.573 3.512 23.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.215 4.215 3 Si 0.783 3.217 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.155 1.155 7 C -0.451 4.451 8 H 0.077 0.923 9 N -0.236 5.236 10 C 0.241 3.759 11 O -0.484 6.484 12 C -0.076 4.076 13 N -0.262 5.262 14 C -0.092 4.092 15 C -0.002 4.002 16 N -0.345 5.345 17 C 0.303 3.697 18 O -0.456 6.456 19 C -0.170 4.170 20 C -0.115 4.115 21 H 0.125 0.875 22 C -0.014 4.014 23 O -0.290 6.290 24 C 0.322 3.678 25 O -0.396 6.396 26 C -0.206 4.206 27 C -0.005 4.005 28 C -0.081 4.081 29 H 0.087 0.913 30 H 0.223 0.777 31 H 0.138 0.862 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.152 0.848 39 H 0.133 0.867 40 H 0.113 0.887 41 H 0.158 0.842 42 H 0.155 0.845 43 H 0.090 0.910 44 H 0.115 0.885 45 H 0.121 0.879 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 20.416 -11.643 3.546 23.769 hybrid contribution -0.045 1.623 0.399 1.672 sum 20.371 -10.019 3.945 23.042 Atomic orbital electron populations 1.69801 1.08086 1.29097 1.50606 1.26079 0.96426 1.02631 0.96376 0.85401 0.79492 0.77047 0.79807 1.18353 1.20387 1.15454 1.18982 0.81433 0.94853 1.49867 0.92312 1.42072 1.05825 1.07668 1.68036 1.20825 0.90666 0.83328 0.81080 1.90508 1.71153 1.32298 1.54465 1.21805 0.90452 0.91032 1.04295 1.61455 1.13759 1.14411 1.36526 1.22578 1.02052 0.94903 0.89635 1.21896 0.79981 0.95483 1.02862 1.48316 1.10246 1.45765 1.30142 1.21092 0.85226 0.79038 0.84369 1.90685 1.18384 1.65812 1.70689 1.21848 0.99316 1.00266 0.95592 1.22192 0.95506 0.96634 0.97179 0.87501 1.24521 0.99822 0.93985 0.83069 1.87054 1.40746 1.53997 1.47171 1.23803 0.81143 0.75002 0.87817 1.90698 1.74903 1.51282 1.22730 1.22990 1.00305 1.05247 0.92072 1.21667 1.00597 0.89999 0.88219 1.22538 0.86013 0.97158 1.02415 0.91287 0.77665 0.86198 0.90721 0.94145 0.90325 0.91054 0.86104 0.85987 0.84823 0.86655 0.88667 0.84172 0.84533 0.91005 0.88539 0.87875 0.93943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.96 21.66 0.30 -54.51 16 2 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 3 Si 0.96 37.28 27.74 68.60 1.90 39.18 16 4 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 6 H -0.23 -7.43 6.51 99.48 0.65 -6.78 16 7 C -0.32 -17.92 10.16 84.04 0.85 -17.07 16 8 H 0.06 3.90 7.39 -2.91 -0.02 3.88 16 9 N -0.59 -26.09 5.09 -306.97 -1.56 -27.66 16 10 C 0.45 18.50 7.44 87.66 0.65 19.15 16 11 O -0.60 -29.83 13.90 -3.07 -0.04 -29.87 16 12 C 0.06 1.47 5.45 85.56 0.47 1.94 16 13 N -0.54 -13.35 4.37 -899.85 -3.93 -17.28 16 14 C 0.04 0.87 5.25 86.38 0.45 1.32 16 15 C 0.12 2.01 6.50 86.35 0.56 2.57 16 16 N -0.61 -9.96 3.01 -817.95 -2.46 -12.42 16 17 C 0.51 7.58 7.52 87.66 0.66 8.24 16 18 O -0.58 -11.97 14.41 -3.03 -0.04 -12.02 16 19 C -0.13 -0.86 3.37 29.85 0.10 -0.76 16 20 C -0.10 -0.78 2.75 -9.75 -0.03 -0.81 16 21 H 0.11 0.98 7.97 -2.39 -0.02 0.96 16 22 C 0.06 0.73 6.67 72.52 0.48 1.21 16 23 O -0.37 -7.08 11.06 -50.15 -0.55 -7.64 16 24 C 0.48 8.76 8.58 71.43 0.61 9.37 16 25 O -0.51 -13.67 18.00 21.65 0.39 -13.28 16 26 C -0.17 -1.26 6.52 30.56 0.20 -1.06 16 27 C 0.12 2.06 6.60 86.35 0.57 2.63 16 28 C 0.05 0.83 5.62 86.38 0.49 1.31 16 29 H 0.28 14.94 8.31 -92.70 -0.77 14.17 16 30 H 0.39 14.10 5.76 -92.71 -0.53 13.56 16 31 H 0.12 2.58 7.97 -2.38 -0.02 2.56 16 32 H 0.07 1.67 8.12 -2.39 -0.02 1.65 16 33 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 2.51 5.76 -2.38 -0.01 2.49 16 35 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.12 1.13 6.02 -2.39 -0.01 1.12 16 37 H 0.12 0.38 7.53 -2.39 -0.02 0.36 16 38 H 0.13 0.30 8.00 -2.38 -0.02 0.28 16 39 H 0.12 1.57 7.67 -2.39 -0.02 1.56 16 40 H 0.10 0.93 7.82 -2.39 -0.02 0.91 16 41 H 0.14 0.46 7.80 -2.39 -0.02 0.44 16 42 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.10 1.68 7.06 -2.39 -0.02 1.66 16 45 H 0.10 1.51 7.99 -2.39 -0.02 1.49 16 46 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -82.74 372.08 0.96 -81.78 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.42 Total: 26.09 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 6.54 Total: 27.62 kcal Atomic # 7 Polarization: -104.21 SS G_CDS: -7.66 Total: -111.87 kcal Atomic # 8 Polarization: -62.55 SS G_CDS: -0.25 Total: -62.80 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 1.90 Total: 39.18 kcal Total: -82.74 0.96 -81.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112767310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.609 kcal (2) G-P(sol) polarization free energy of solvation -82.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds