Wall clock time and date at job start Sat Apr 11 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35266 * 126.70817 * 2 1 4 4 C 1.41925 * 103.96220 * 180.11206 * 3 2 1 5 5 O 1.35713 * 126.88285 * 179.90946 * 4 3 2 6 6 C 1.42895 * 117.00106 * 179.70984 * 5 4 3 7 7 C 1.50701 * 109.47183 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99817 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99988 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99965 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47404 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46664 * 304.99963 * 11 10 9 13 13 C 1.54809 * 109.47247 * 185.00206 * 11 10 9 14 14 N 1.45124 * 109.53942 * 172.10515 * 13 11 10 15 15 C 1.36931 * 118.75820 * 269.29241 * 14 13 11 16 16 H 1.08006 * 120.00144 * 139.40455 * 15 14 13 17 17 C 1.38805 * 120.00547 * 319.40704 * 15 14 13 18 18 N 1.31622 * 120.00641 * 156.47447 * 17 15 14 19 19 Si 1.86805 * 119.99939 * 336.47621 * 17 15 14 20 20 H 1.48499 * 109.47162 * 95.52023 * 19 17 15 21 21 H 1.48489 * 109.47464 * 215.52195 * 19 17 15 22 22 H 1.48507 * 109.46931 * 335.52521 * 19 17 15 23 23 C 1.47506 * 122.48261 * 89.29112 * 14 13 11 24 24 C 1.53581 * 111.02535 * 318.37520 * 23 14 13 25 25 C 1.51528 * 109.58005 * 320.01832 * 24 23 14 26 26 O 1.38010 * 109.46999 * 64.99195 * 11 10 9 27 27 N 1.30620 * 106.23937 * 359.64875 * 4 3 2 28 28 O 1.20907 * 111.49877 * 0.22255 * 27 4 3 29 29 H 1.09005 * 109.47011 * 180.25908 * 1 2 3 30 30 H 1.09000 * 109.47345 * 300.25581 * 1 2 3 31 31 H 1.08995 * 109.47498 * 60.26270 * 1 2 3 32 32 H 1.08002 * 128.02104 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.46968 * 299.99895 * 6 5 4 34 34 H 1.08998 * 109.47255 * 60.00024 * 6 5 4 35 35 H 0.97001 * 119.99885 * 359.97438 * 9 7 6 36 36 H 1.09008 * 109.47037 * 299.99958 * 10 9 7 37 37 H 1.08998 * 109.47215 * 59.99400 * 10 9 7 38 38 H 1.08992 * 109.45894 * 292.12998 * 13 11 10 39 39 H 1.08999 * 109.45421 * 52.08645 * 13 11 10 40 40 H 0.97000 * 120.00152 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.16894 * 197.97877 * 23 14 13 42 42 H 1.09003 * 109.12431 * 78.74290 * 23 14 13 43 43 H 1.09002 * 109.45015 * 199.98815 * 24 23 14 44 44 H 1.09000 * 109.45159 * 80.05758 * 24 23 14 45 45 H 1.08999 * 109.59519 * 331.61969 * 25 24 23 46 46 H 1.09004 * 109.58867 * 211.18445 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0844 0.0000 4 6 3.6244 0.5357 -0.0027 5 8 4.7953 1.2218 -0.0054 6 6 5.9988 0.4514 -0.0014 7 6 7.1879 1.3771 -0.0046 8 8 7.0212 2.5784 -0.0103 9 7 8.4366 0.8701 -0.0022 10 6 9.5926 1.7700 -0.0059 11 6 10.8812 0.9452 -0.0014 12 1 10.8689 0.2569 0.8436 13 6 12.0997 1.8921 0.1219 14 7 13.3059 1.1084 0.3138 15 6 13.7037 0.8133 1.5904 16 1 14.0910 -0.1679 1.8222 17 6 13.6092 1.7751 2.5868 18 7 13.5354 1.4101 3.8492 19 14 13.5867 3.5878 2.1360 20 1 12.1812 4.0601 2.0540 21 1 14.3103 4.3651 3.1739 22 1 14.2506 3.7793 0.8215 23 6 14.1197 0.6178 -0.8144 24 6 13.2282 0.0935 -1.9498 25 6 12.0577 -0.6706 -1.3648 26 8 10.9726 0.2284 -1.1772 27 7 3.4764 -0.7621 0.0037 28 8 2.3085 -1.0749 0.0053 29 1 -0.3633 -1.0277 0.0046 30 1 -0.3634 0.5178 0.8877 31 1 -0.3634 0.5097 -0.8923 32 1 2.0311 2.1263 -0.0004 33 1 6.0274 -0.1731 0.8915 34 1 6.0281 -0.1814 -0.8884 35 1 8.5700 -0.0907 0.0020 36 1 9.5638 2.3948 -0.8987 37 1 9.5635 2.4026 0.8813 38 1 12.1925 2.4848 -0.7880 39 1 11.9585 2.5561 0.9747 40 1 13.4689 2.0822 4.5454 41 1 14.7660 -0.1878 -0.4658 42 1 14.7364 1.4337 -1.1913 43 1 13.8096 -0.5685 -2.5916 44 1 12.8566 0.9334 -2.5368 45 1 12.3452 -1.1016 -0.4058 46 1 11.7604 -1.4644 -2.0502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001149869043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:36 Heat of formation + Delta-G solvation = -18.824958 kcal Electronic energy + Delta-G solvation = -29374.268949 eV Core-core repulsion = 25076.542852 eV Total energy + Delta-G solvation = -4297.726097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.18927 -40.12014 -39.20248 -38.38136 -35.41165 -34.76482 -34.18031 -32.85737 -32.67080 -31.60001 -29.73426 -28.43932 -27.91065 -26.05873 -25.09353 -23.70961 -22.80403 -21.70405 -21.15916 -20.47021 -19.71641 -18.28458 -18.14777 -17.36345 -17.03020 -16.95832 -16.54697 -16.19140 -15.97441 -15.62462 -14.95778 -14.60835 -14.51580 -14.25672 -14.19375 -13.86519 -13.71492 -13.64450 -13.28980 -13.11520 -12.84603 -12.74305 -12.50421 -12.46171 -12.04896 -11.88425 -11.63922 -11.42339 -11.22218 -10.83676 -10.55288 -10.45444 -10.10367 -9.95065 -9.84536 -9.81110 -9.72609 -9.48868 -9.04995 -8.98905 -8.57450 -6.89191 -6.12199 -3.56551 1.08833 1.97707 2.11357 2.52133 2.77320 3.25248 3.38082 3.41517 3.47142 3.88497 4.03538 4.42778 4.44249 4.56489 4.61614 4.80191 4.81441 4.81755 4.86575 4.92040 5.17613 5.19257 5.31135 5.34302 5.43326 5.53036 5.56144 5.62831 5.81635 5.91873 5.93096 6.01451 6.11892 6.31252 6.32420 6.43499 6.43786 6.59159 6.68913 6.71065 6.74416 7.45966 7.93828 7.96519 8.05447 8.14870 8.28933 8.90006 9.59360 9.97606 11.02579 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.002197 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.144942 B =12739.750585 C =13502.821529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.010 4.010 3 C -0.233 4.233 4 C 0.214 3.786 5 O -0.256 6.256 6 C 0.046 3.954 7 C 0.514 3.486 8 O -0.523 6.523 9 N -0.711 5.711 10 C 0.132 3.868 11 C 0.071 3.929 12 H 0.065 0.935 13 C 0.119 3.881 14 N -0.603 5.603 15 C -0.283 4.283 16 H 0.077 0.923 17 C 0.042 3.958 18 N -0.892 5.892 19 Si 0.872 3.128 20 H -0.283 1.283 21 H -0.298 1.298 22 H -0.269 1.269 23 C 0.144 3.856 24 C -0.168 4.168 25 C 0.086 3.914 26 O -0.395 6.395 27 N -0.411 5.411 28 O 0.098 5.902 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.179 0.821 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.405 0.595 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.046 0.954 39 H 0.062 0.938 40 H 0.265 0.735 41 H 0.059 0.941 42 H 0.021 0.979 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.766 -5.104 -10.072 24.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.255 4.255 4 C 0.016 3.984 5 O -0.161 6.161 6 C -0.033 4.033 7 C 0.298 3.702 8 O -0.399 6.399 9 N -0.364 5.364 10 C 0.009 3.991 11 C 0.009 3.991 12 H 0.083 0.917 13 C -0.009 4.009 14 N -0.326 5.326 15 C -0.412 4.412 16 H 0.095 0.905 17 C -0.160 4.160 18 N -0.532 5.532 19 Si 0.701 3.299 20 H -0.210 1.210 21 H -0.226 1.226 22 H -0.193 1.193 23 C 0.019 3.981 24 C -0.207 4.207 25 C 0.010 3.990 26 O -0.315 6.315 27 N -0.139 5.139 28 O 0.038 5.962 29 H 0.104 0.896 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.196 0.804 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.240 0.760 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.039 0.961 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.033 -4.860 -10.030 23.804 hybrid contribution 0.301 1.220 0.143 1.265 sum -20.732 -3.640 -9.887 23.255 Atomic orbital electron populations 1.20387 0.83480 1.04952 1.04426 1.24352 0.96495 0.85589 1.00913 1.21796 0.88303 1.01776 1.13632 1.22070 0.88483 0.88016 0.99791 1.86287 1.09997 1.30771 1.88998 1.22500 0.82256 0.93668 1.04859 1.19850 0.83852 0.88946 0.77529 1.90755 1.85615 1.15115 1.48401 1.45770 1.04764 1.11181 1.74699 1.21509 0.82339 0.92251 1.02994 1.22524 0.94078 0.94943 0.87551 0.91707 1.21828 0.86044 0.93314 0.99700 1.44006 1.22482 1.63068 1.03002 1.18780 1.42214 0.97129 0.83036 0.90548 1.25535 0.97594 0.97886 0.94941 1.69881 1.49739 1.33924 0.99675 0.87004 0.77526 0.87091 0.78271 1.21016 1.22572 1.19341 1.21268 0.92310 0.97051 0.87486 1.22563 0.98222 1.00643 0.99261 1.22010 0.86051 0.90551 1.00395 1.86081 1.48442 1.57560 1.39368 1.74168 0.97915 1.14210 1.27627 1.84796 1.10305 1.31998 1.69076 0.89589 0.88839 0.88861 0.80366 0.88475 0.88500 0.75993 0.90732 0.89820 0.93543 0.91964 0.92515 0.92232 0.96098 0.91519 0.91658 0.91833 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.21 10.45 36.01 0.38 0.17 16 2 C -0.01 -0.07 7.48 -35.37 -0.26 -0.34 16 3 C -0.23 -2.18 11.10 -39.23 -0.44 -2.61 16 4 C 0.21 2.68 8.01 -16.66 -0.13 2.54 16 5 O -0.26 -3.65 9.74 -38.76 -0.38 -4.03 16 6 C 0.05 0.57 6.14 36.01 0.22 0.79 16 7 C 0.51 7.83 7.91 -10.99 -0.09 7.74 16 8 O -0.52 -10.13 16.50 -14.35 -0.24 -10.37 16 9 N -0.71 -10.14 5.49 -60.30 -0.33 -10.47 16 10 C 0.13 2.20 5.34 -4.04 -0.02 2.18 16 11 C 0.07 1.28 2.68 -25.78 -0.07 1.21 16 12 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 13 C 0.12 2.50 3.93 -3.83 -0.02 2.49 16 14 N -0.60 -13.60 1.75 -172.02 -0.30 -13.90 16 15 C -0.28 -7.53 9.69 -15.06 -0.15 -7.68 16 16 H 0.08 2.20 8.06 -52.48 -0.42 1.77 16 17 C 0.04 1.18 5.22 -17.43 -0.09 1.09 16 18 N -0.89 -26.34 13.97 55.49 0.78 -25.57 16 19 Si 0.87 21.76 25.27 -169.99 -4.29 17.47 16 20 H -0.28 -6.86 6.70 56.52 0.38 -6.48 16 21 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.14 2.73 6.30 -3.19 -0.02 2.71 16 24 C -0.17 -2.59 5.78 -27.17 -0.16 -2.75 16 25 C 0.09 1.34 6.37 36.41 0.23 1.57 16 26 O -0.40 -6.64 9.38 -26.52 -0.25 -6.89 16 27 N -0.41 -5.04 11.54 30.38 0.35 -4.69 16 28 O 0.10 1.00 11.19 17.07 0.19 1.19 16 29 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 31 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 32 H 0.18 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.41 4.84 8.46 -40.82 -0.35 4.49 16 36 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 37 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 38 H 0.05 0.93 8.11 -51.93 -0.42 0.51 16 39 H 0.06 1.44 3.65 -51.93 -0.19 1.25 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 41 H 0.06 1.12 7.91 -51.93 -0.41 0.71 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.06 1.03 8.01 -51.93 -0.42 0.62 16 45 H 0.06 1.12 7.40 -51.93 -0.38 0.73 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 379.65 15.07 5.72 5.72 Total: -1.00 -34.03 379.65 -6.18 -40.21 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -6.82 Total: 2.21 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -0.61 Total: 9.11 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.49 Total: -54.62 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.67 Total: -20.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.29 Total: 17.47 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.03 -6.18 -40.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149869043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.386 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds