Wall clock time and date at job start Sat Apr 11 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35266 * 126.70817 * 2 1 4 4 C 1.41925 * 103.96220 * 180.11206 * 3 2 1 5 5 O 1.35713 * 126.88285 * 179.90946 * 4 3 2 6 6 C 1.42895 * 117.00106 * 179.70984 * 5 4 3 7 7 C 1.50701 * 109.47183 * 180.02562 * 6 5 4 8 8 O 1.21275 * 119.99817 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99988 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99965 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47404 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46664 * 304.99963 * 11 10 9 13 13 C 1.54809 * 109.47247 * 185.00206 * 11 10 9 14 14 N 1.45124 * 109.53942 * 172.10515 * 13 11 10 15 15 C 1.36931 * 118.75820 * 269.29241 * 14 13 11 16 16 H 1.08006 * 120.00144 * 139.40455 * 15 14 13 17 17 C 1.38805 * 120.00547 * 319.40704 * 15 14 13 18 18 N 1.31622 * 120.00641 * 156.47447 * 17 15 14 19 19 Si 1.86805 * 119.99939 * 336.47621 * 17 15 14 20 20 H 1.48499 * 109.47162 * 95.52023 * 19 17 15 21 21 H 1.48489 * 109.47464 * 215.52195 * 19 17 15 22 22 H 1.48507 * 109.46931 * 335.52521 * 19 17 15 23 23 C 1.47506 * 122.48261 * 89.29112 * 14 13 11 24 24 C 1.53581 * 111.02535 * 318.37520 * 23 14 13 25 25 C 1.51528 * 109.58005 * 320.01832 * 24 23 14 26 26 O 1.38010 * 109.46999 * 64.99195 * 11 10 9 27 27 N 1.30620 * 106.23937 * 359.64875 * 4 3 2 28 28 O 1.20907 * 111.49877 * 0.22255 * 27 4 3 29 29 H 1.09005 * 109.47011 * 180.25908 * 1 2 3 30 30 H 1.09000 * 109.47345 * 300.25581 * 1 2 3 31 31 H 1.08995 * 109.47498 * 60.26270 * 1 2 3 32 32 H 1.08002 * 128.02104 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.46968 * 299.99895 * 6 5 4 34 34 H 1.08998 * 109.47255 * 60.00024 * 6 5 4 35 35 H 0.97001 * 119.99885 * 359.97438 * 9 7 6 36 36 H 1.09008 * 109.47037 * 299.99958 * 10 9 7 37 37 H 1.08998 * 109.47215 * 59.99400 * 10 9 7 38 38 H 1.08992 * 109.45894 * 292.12998 * 13 11 10 39 39 H 1.08999 * 109.45421 * 52.08645 * 13 11 10 40 40 H 0.97000 * 120.00152 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.16894 * 197.97877 * 23 14 13 42 42 H 1.09003 * 109.12431 * 78.74290 * 23 14 13 43 43 H 1.09002 * 109.45015 * 199.98815 * 24 23 14 44 44 H 1.09000 * 109.45159 * 80.05758 * 24 23 14 45 45 H 1.08999 * 109.59519 * 331.61969 * 25 24 23 46 46 H 1.09004 * 109.58867 * 211.18445 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3155 1.0844 0.0000 4 6 3.6244 0.5357 -0.0027 5 8 4.7953 1.2218 -0.0054 6 6 5.9988 0.4514 -0.0014 7 6 7.1879 1.3771 -0.0046 8 8 7.0212 2.5784 -0.0103 9 7 8.4366 0.8701 -0.0022 10 6 9.5926 1.7700 -0.0059 11 6 10.8812 0.9452 -0.0014 12 1 10.8689 0.2569 0.8436 13 6 12.0997 1.8921 0.1219 14 7 13.3059 1.1084 0.3138 15 6 13.7037 0.8133 1.5904 16 1 14.0910 -0.1679 1.8222 17 6 13.6092 1.7751 2.5868 18 7 13.5354 1.4101 3.8492 19 14 13.5867 3.5878 2.1360 20 1 12.1812 4.0601 2.0540 21 1 14.3103 4.3651 3.1739 22 1 14.2506 3.7793 0.8215 23 6 14.1197 0.6178 -0.8144 24 6 13.2282 0.0935 -1.9498 25 6 12.0577 -0.6706 -1.3648 26 8 10.9726 0.2284 -1.1772 27 7 3.4764 -0.7621 0.0037 28 8 2.3085 -1.0749 0.0053 29 1 -0.3633 -1.0277 0.0046 30 1 -0.3634 0.5178 0.8877 31 1 -0.3634 0.5097 -0.8923 32 1 2.0311 2.1263 -0.0004 33 1 6.0274 -0.1731 0.8915 34 1 6.0281 -0.1814 -0.8884 35 1 8.5700 -0.0907 0.0020 36 1 9.5638 2.3948 -0.8987 37 1 9.5635 2.4026 0.8813 38 1 12.1925 2.4848 -0.7880 39 1 11.9585 2.5561 0.9747 40 1 13.4689 2.0822 4.5454 41 1 14.7660 -0.1878 -0.4658 42 1 14.7364 1.4337 -1.1913 43 1 13.8096 -0.5685 -2.5916 44 1 12.8566 0.9334 -2.5368 45 1 12.3452 -1.1016 -0.4058 46 1 11.7604 -1.4644 -2.0502 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001149869043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:35 Heat of formation + Delta-G solvation = -44.254819 kcal Electronic energy + Delta-G solvation = -29375.371670 eV Core-core repulsion = 25076.542852 eV Total energy + Delta-G solvation = -4298.828819 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.96568 -41.33929 -40.56027 -39.51415 -37.08107 -36.14412 -34.79219 -34.27950 -33.61967 -33.39575 -31.05537 -29.58343 -28.60221 -27.52976 -26.76875 -24.49852 -24.40829 -22.72314 -22.54767 -21.62372 -21.26975 -19.16335 -18.95916 -18.95132 -18.30168 -18.01925 -17.84599 -17.55438 -17.29281 -17.02534 -16.31973 -16.20462 -15.73198 -15.51948 -15.20729 -15.01970 -14.90897 -14.44874 -14.37013 -14.19521 -14.12263 -13.93349 -13.85779 -13.80899 -13.23700 -13.22084 -12.92780 -12.85975 -12.44772 -12.31535 -12.14550 -12.08256 -11.82704 -11.61423 -11.35311 -11.21280 -10.72841 -10.52799 -10.38975 -10.32838 -10.27520 -8.77465 -8.28023 -5.67797 0.43134 1.13530 1.17283 1.25393 1.31585 1.36138 1.45974 2.12945 2.34683 2.37490 2.67060 2.96037 3.09041 3.27070 3.46780 3.81882 3.88423 3.92894 3.93974 3.97997 4.02043 4.12186 4.23221 4.37488 4.40570 4.42095 4.50065 4.64552 4.67505 4.72336 4.77769 4.79825 4.89930 4.96669 5.00594 5.15749 5.19021 5.22090 5.27461 5.33949 5.78266 5.89578 6.11615 6.30483 6.66643 6.94887 6.96886 7.20230 7.56833 7.96106 8.90830 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018024 B = 0.002197 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.144942 B =12739.750585 C =13502.821529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.011 3.989 3 C -0.252 4.252 4 C 0.189 3.811 5 O -0.280 6.280 6 C 0.053 3.947 7 C 0.517 3.483 8 O -0.568 6.568 9 N -0.700 5.700 10 C 0.139 3.861 11 C 0.091 3.909 12 H 0.043 0.957 13 C 0.112 3.888 14 N -0.612 5.612 15 C -0.265 4.265 16 H 0.045 0.955 17 C -0.009 4.009 18 N -0.938 5.938 19 Si 0.928 3.072 20 H -0.275 1.275 21 H -0.305 1.305 22 H -0.263 1.263 23 C 0.137 3.863 24 C -0.156 4.156 25 C 0.082 3.918 26 O -0.390 6.390 27 N -0.431 5.431 28 O 0.093 5.907 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.195 0.805 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.418 0.582 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.040 0.960 40 H 0.264 0.736 41 H 0.055 0.945 42 H 0.023 0.977 43 H 0.102 0.898 44 H 0.068 0.932 45 H 0.039 0.961 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.840 -5.631 -12.430 27.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.053 4.053 3 C -0.274 4.274 4 C -0.008 4.008 5 O -0.186 6.186 6 C -0.025 4.025 7 C 0.302 3.698 8 O -0.447 6.447 9 N -0.354 5.354 10 C 0.015 3.985 11 C 0.029 3.971 12 H 0.061 0.939 13 C -0.015 4.015 14 N -0.336 5.336 15 C -0.394 4.394 16 H 0.062 0.938 17 C -0.206 4.206 18 N -0.581 5.581 19 Si 0.757 3.243 20 H -0.202 1.202 21 H -0.234 1.234 22 H -0.187 1.187 23 C 0.013 3.987 24 C -0.195 4.195 25 C 0.007 3.993 26 O -0.309 6.309 27 N -0.159 5.159 28 O 0.033 5.967 29 H 0.118 0.882 30 H 0.130 0.870 31 H 0.131 0.869 32 H 0.213 0.787 33 H 0.131 0.869 34 H 0.136 0.864 35 H 0.255 0.745 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.041 0.959 43 H 0.121 0.879 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -23.113 -5.430 -12.437 26.803 hybrid contribution 0.899 1.254 0.820 1.747 sum -22.214 -4.175 -11.617 25.414 Atomic orbital electron populations 1.20685 0.79827 1.06467 1.06142 1.25154 0.98082 0.84071 0.97976 1.22158 0.87307 1.03217 1.14681 1.22463 0.88677 0.88630 1.01032 1.86226 1.10896 1.31981 1.89535 1.22473 0.80738 0.92693 1.06582 1.20320 0.84555 0.88698 0.76194 1.90731 1.86251 1.17172 1.50552 1.45605 1.04081 1.11605 1.74065 1.21269 0.82537 0.92197 1.02488 1.22104 0.93537 0.93918 0.87515 0.93873 1.21891 0.86607 0.93649 0.99352 1.44123 1.23648 1.63317 1.02516 1.18662 1.40286 0.95609 0.84889 0.93761 1.26055 0.98463 1.01304 0.94821 1.69986 1.52567 1.34875 1.00676 0.86082 0.77753 0.82770 0.77709 1.20151 1.23364 1.18727 1.21442 0.92800 0.96977 0.87488 1.22470 0.97745 1.01284 0.97956 1.22217 0.85999 0.91027 1.00105 1.86107 1.49048 1.57495 1.38238 1.74145 0.99092 1.14257 1.28447 1.84750 1.10075 1.32949 1.68961 0.88206 0.87021 0.86902 0.78747 0.86910 0.86384 0.74452 0.90418 0.91298 0.92007 0.94195 0.92709 0.92681 0.95908 0.87941 0.91347 0.94277 0.86948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.17 10.45 71.24 0.74 0.57 16 2 C 0.01 0.14 7.48 25.00 0.19 0.33 16 3 C -0.25 -4.41 11.10 22.50 0.25 -4.16 16 4 C 0.19 4.64 8.01 85.79 0.69 5.33 16 5 O -0.28 -8.00 9.74 -71.31 -0.69 -8.69 16 6 C 0.05 1.28 6.14 71.24 0.44 1.71 16 7 C 0.52 15.53 7.91 87.66 0.69 16.23 16 8 O -0.57 -22.22 16.50 16.03 0.26 -21.96 16 9 N -0.70 -19.40 5.49 -463.07 -2.54 -21.95 16 10 C 0.14 4.57 5.34 86.38 0.46 5.03 16 11 C 0.09 3.23 2.68 31.21 0.08 3.32 16 12 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 13 C 0.11 4.64 3.93 87.25 0.34 4.98 16 14 N -0.61 -27.44 1.75 -698.15 -1.22 -28.65 16 15 C -0.26 -14.39 9.69 84.03 0.81 -13.57 16 16 H 0.04 2.66 8.06 -2.91 -0.02 2.64 16 17 C -0.01 -0.49 5.22 84.86 0.44 -0.05 16 18 N -0.94 -57.25 13.97 21.65 0.30 -56.94 16 19 Si 0.93 45.78 25.27 68.60 1.73 47.51 16 20 H -0.27 -13.05 6.70 99.48 0.67 -12.38 16 21 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 22 H -0.26 -12.56 7.11 99.48 0.71 -11.85 16 23 C 0.14 5.00 6.30 86.38 0.54 5.54 16 24 C -0.16 -4.31 5.78 30.31 0.18 -4.13 16 25 C 0.08 2.34 6.37 71.50 0.46 2.79 16 26 O -0.39 -12.22 9.38 -117.80 -1.11 -13.33 16 27 N -0.43 -10.25 11.54 -172.60 -1.99 -12.24 16 28 O 0.09 1.76 11.19 71.24 0.80 2.56 16 29 H 0.10 0.01 8.14 -2.38 -0.02 -0.01 16 30 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.11 -0.09 8.14 -2.39 -0.02 -0.11 16 32 H 0.20 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.42 9.42 8.46 -92.71 -0.78 8.63 16 36 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 37 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 38 H 0.06 2.36 8.11 -2.39 -0.02 2.34 16 39 H 0.04 1.84 3.65 -2.39 -0.01 1.83 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.05 2.03 7.91 -2.39 -0.02 2.02 16 42 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.07 1.90 8.01 -2.39 -0.02 1.88 16 45 H 0.04 1.32 7.40 -2.39 -0.02 1.30 16 46 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 Total: -1.00 -76.47 379.65 2.04 -74.42 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.18 Total: 15.36 kcal Atomic # 6 Polarization: 17.59 SS G_CDS: 6.32 Total: 23.91 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -5.45 Total: -119.78 kcal Atomic # 8 Polarization: -40.68 SS G_CDS: -0.74 Total: -41.42 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.73 Total: 47.51 kcal Total: -76.47 2.04 -74.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001149869043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.169 kcal (2) G-P(sol) polarization free energy of solvation -76.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds