Wall clock time and date at job start Sat Apr 11 2020 05:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99339 * 2 1 4 4 H 1.48501 * 109.47161 * 269.99980 * 3 2 1 5 5 H 1.48497 * 109.47344 * 30.00172 * 3 2 1 6 6 H 1.48497 * 109.46878 * 150.00381 * 3 2 1 7 7 C 1.38809 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 195.44522 * 7 2 1 9 9 N 1.36932 * 120.00352 * 15.45168 * 7 2 1 10 10 C 1.47511 * 118.75660 * 26.09449 * 9 7 2 11 11 C 1.53572 * 111.03021 * 138.35328 * 10 9 7 12 12 C 1.51543 * 109.57954 * 320.02679 * 11 10 9 13 13 O 1.42146 * 108.75816 * 91.39687 * 12 11 10 14 14 C 1.38019 * 119.43946 * 272.77046 * 13 12 11 15 15 H 1.09002 * 109.46916 * 303.42753 * 14 13 12 16 16 C 1.52998 * 109.47052 * 183.43205 * 14 13 12 17 17 N 1.46506 * 109.46853 * 65.00081 * 16 14 13 18 18 C 1.34785 * 119.99554 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99477 * 180.02562 * 18 17 16 21 21 N 1.46499 * 109.46907 * 179.97438 * 20 18 17 22 22 C 1.33877 * 122.76497 * 269.71057 * 21 20 18 23 23 O 1.21222 * 125.39413 * 359.97438 * 22 21 20 24 24 C 1.51308 * 109.20658 * 179.84347 * 22 21 20 25 25 C 1.54231 * 103.55797 * 0.38384 * 24 22 21 26 26 C 1.33876 * 122.76002 * 89.99660 * 21 20 18 27 27 O 1.21226 * 125.39745 * 0.02562 * 26 21 20 28 28 C 1.45120 * 118.76030 * 206.07967 * 9 7 2 29 29 H 0.96995 * 120.00612 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.16861 * 258.75439 * 10 9 7 31 31 H 1.09002 * 109.16813 * 18.01103 * 10 9 7 32 32 H 1.08999 * 109.45563 * 199.99078 * 11 10 9 33 33 H 1.08997 * 109.44862 * 80.05594 * 11 10 9 34 34 H 1.09002 * 109.58736 * 331.61149 * 12 11 10 35 35 H 1.08998 * 109.58384 * 211.18254 * 12 11 10 36 36 H 1.09002 * 109.47542 * 185.00024 * 16 14 13 37 37 H 1.09006 * 109.47603 * 305.00214 * 16 14 13 38 38 H 0.96990 * 120.00327 * 359.97438 * 17 16 14 39 39 H 1.08997 * 109.47183 * 299.99571 * 20 18 17 40 40 H 1.08997 * 109.47550 * 59.99744 * 20 18 17 41 41 H 1.09001 * 110.79786 * 241.77260 * 24 22 21 42 42 H 1.09003 * 110.55203 * 118.87672 * 24 22 21 43 43 H 1.09007 * 110.60541 * 241.26021 * 25 24 22 44 44 H 1.08991 * 110.73845 * 118.35930 * 25 24 22 45 45 H 1.09004 * 109.46167 * 149.28169 * 28 9 7 46 46 H 1.09004 * 109.45622 * 29.32335 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0611 -1.2190 0.2486 9 7 1.3629 -2.3665 -0.3170 10 6 0.1710 -2.3027 -1.1837 11 6 0.1766 -3.4422 -2.2133 12 6 1.5842 -3.6473 -2.7360 13 8 2.2340 -4.6209 -1.9296 14 6 2.8931 -4.2226 -0.7842 15 1 3.6430 -3.4735 -1.0384 16 6 3.5770 -5.4316 -0.1428 17 7 4.6232 -5.9324 -1.0377 18 6 5.3629 -7.0004 -0.6785 19 8 5.1626 -7.5465 0.3857 20 6 6.4395 -7.5152 -1.5988 21 7 7.0943 -8.6730 -0.9848 22 6 8.1688 -8.5626 -0.1938 23 8 8.7177 -7.5236 0.1038 24 6 8.5874 -9.9399 0.2723 25 6 7.5637 -10.8762 -0.4014 26 6 6.6708 -9.9290 -1.1729 27 8 5.7225 -10.2557 -1.8538 28 6 1.8755 -3.6165 0.2126 29 1 -0.4851 0.8399 -0.0004 30 1 -0.7245 -2.3819 -0.5672 31 1 0.1607 -1.3474 -1.7085 32 1 -0.4845 -3.1866 -3.0413 33 1 -0.1723 -4.3602 -1.7405 34 1 2.1329 -2.7067 -2.6870 35 1 1.5435 -3.9956 -3.7680 36 1 4.0224 -5.1357 0.8071 37 1 2.8405 -6.2164 0.0302 38 1 4.7832 -5.4960 -1.8890 39 1 5.9946 -7.8107 -2.5490 40 1 7.1762 -6.7306 -1.7710 41 1 8.5222 -10.0176 1.3576 42 1 9.5977 -10.1681 -0.0674 43 1 6.9891 -11.4197 0.3487 44 1 8.0622 -11.5701 -1.0781 45 1 1.0509 -4.3142 0.3591 46 1 2.3682 -3.4316 1.1672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150685644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:42 Heat of formation + Delta-G solvation = -112.169496 kcal Electronic energy + Delta-G solvation = -29998.120926 eV Core-core repulsion = 25696.347106 eV Total energy + Delta-G solvation = -4301.773820 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25694 -39.66758 -38.86770 -38.75484 -36.14030 -35.31191 -34.69342 -33.82904 -32.20026 -31.52158 -29.32536 -27.76918 -26.55629 -25.60109 -25.15167 -22.84104 -22.74354 -21.10830 -20.82951 -19.75264 -19.54215 -18.00327 -17.72191 -17.02025 -16.81746 -16.62522 -16.20261 -15.91974 -15.27737 -15.10818 -15.05677 -14.71007 -14.52227 -14.37710 -14.26361 -13.92220 -13.73438 -13.35096 -13.18931 -13.17251 -12.93333 -12.52458 -12.12040 -12.11447 -11.79899 -11.43215 -11.23118 -11.04811 -11.00031 -10.90675 -10.73305 -10.65753 -10.38636 -10.25568 -9.90630 -9.79002 -9.76840 -9.68664 -9.04432 -8.85362 -8.46530 -6.79442 -5.86974 -3.32272 1.20160 1.97737 2.37761 2.49584 3.20569 3.31785 3.39385 3.40304 3.68069 3.81868 4.01473 4.12042 4.40193 4.41902 4.59410 4.69286 4.85012 5.00849 5.02070 5.15309 5.16150 5.19847 5.32377 5.50015 5.57766 5.67274 5.83665 5.94457 5.98885 6.13386 6.21915 6.31720 6.42755 6.44557 6.52893 6.67866 6.71823 6.79078 6.96920 7.32282 7.35386 7.48072 7.60344 7.73778 8.10123 8.17806 8.35984 9.13860 9.78404 10.24471 11.20519 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002383 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.952933 B =11749.486138 C =12633.004981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.007 3.993 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.592 5.592 10 C 0.177 3.823 11 C -0.177 4.177 12 C 0.088 3.912 13 O -0.396 6.396 14 C 0.067 3.933 15 H 0.053 0.947 16 C 0.133 3.867 17 N -0.712 5.712 18 C 0.500 3.500 19 O -0.538 6.538 20 C 0.078 3.922 21 N -0.558 5.558 22 C 0.531 3.469 23 O -0.479 6.479 24 C -0.154 4.154 25 C -0.154 4.154 26 C 0.531 3.469 27 O -0.479 6.479 28 C 0.128 3.872 29 H 0.255 0.745 30 H 0.027 0.973 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.405 0.595 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.044 0.956 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.065 -19.513 -5.067 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.192 4.192 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.313 5.313 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.012 3.988 13 O -0.315 6.315 14 C 0.005 3.995 15 H 0.070 0.930 16 C 0.010 3.990 17 N -0.364 5.364 18 C 0.284 3.716 19 O -0.415 6.415 20 C -0.047 4.047 21 N -0.301 5.301 22 C 0.320 3.680 23 O -0.350 6.350 24 C -0.194 4.194 25 C -0.194 4.194 26 C 0.320 3.680 27 O -0.350 6.350 28 C -0.001 4.001 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.239 0.761 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.062 0.938 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.513 -19.506 -4.532 24.732 hybrid contribution 0.250 1.632 -0.351 1.688 sum 14.763 -17.873 -4.883 23.691 Atomic orbital electron populations 1.70068 1.05251 1.25616 1.53655 1.25053 0.95303 0.98448 1.00402 0.86286 0.79156 0.83589 0.77709 1.21393 1.21668 1.20368 1.19228 0.92400 0.84852 1.43109 0.91547 1.43838 1.31460 1.01534 1.54427 1.21002 0.88437 0.95462 0.89912 1.22774 0.97078 1.01328 1.00420 1.22016 0.92791 0.92178 0.91794 1.86073 1.70685 1.38009 1.36766 1.22630 0.94927 0.93757 0.88222 0.92950 1.21471 0.88749 0.96175 0.92649 1.45879 1.36190 1.31140 1.23162 1.20611 0.82753 0.80713 0.87499 1.90709 1.69105 1.57914 1.23798 1.21587 0.96445 0.89454 0.97255 1.46309 1.29101 1.08927 1.45801 1.20828 0.78512 0.92235 0.76424 1.90797 1.56054 1.33556 1.54571 1.22445 1.01660 0.90807 1.04441 1.22450 0.97300 0.98276 1.01334 1.20835 0.84084 0.83015 0.80085 1.90798 1.26479 1.79955 1.37720 1.21401 0.95105 0.89001 0.94619 0.93527 0.95437 0.90616 0.92074 0.92381 0.92030 0.91202 0.90091 0.90838 0.76091 0.85770 0.85810 0.85898 0.86083 0.85936 0.86062 0.93793 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.55 11.00 55.49 0.61 -24.94 16 2 C 0.01 0.19 4.89 -17.43 -0.09 0.10 16 3 Si 0.90 21.24 29.58 -169.99 -5.03 16.21 16 4 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.27 -7.03 9.46 -15.06 -0.14 -7.17 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.22 2.23 -172.02 -0.38 -14.60 16 10 C 0.18 4.11 4.70 -3.19 -0.02 4.10 16 11 C -0.18 -3.29 5.79 -27.17 -0.16 -3.45 16 12 C 0.09 1.53 6.37 36.42 0.23 1.76 16 13 O -0.40 -6.89 9.38 -26.55 -0.25 -7.14 16 14 C 0.07 1.15 2.68 -25.78 -0.07 1.08 16 15 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.13 2.05 5.34 -4.04 -0.02 2.03 16 17 N -0.71 -9.41 5.49 -60.29 -0.33 -9.74 16 18 C 0.50 6.94 7.90 -10.98 -0.09 6.85 16 19 O -0.54 -9.44 16.43 5.56 0.09 -9.35 16 20 C 0.08 0.78 6.04 -5.19 -0.03 0.75 16 21 N -0.56 -5.62 2.04 -116.63 -0.24 -5.86 16 22 C 0.53 5.10 8.08 -11.09 -0.09 5.01 16 23 O -0.48 -6.29 17.47 5.61 0.10 -6.19 16 24 C -0.15 -0.69 7.03 -26.94 -0.19 -0.88 16 25 C -0.15 -0.68 7.03 -26.94 -0.19 -0.87 16 26 C 0.53 5.09 8.08 -11.08 -0.09 5.00 16 27 O -0.48 -6.28 17.48 5.60 0.10 -6.18 16 28 C 0.13 2.62 5.12 -3.83 -0.02 2.60 16 29 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.03 0.70 8.04 -51.93 -0.42 0.28 16 31 H 0.08 1.94 6.37 -51.93 -0.33 1.61 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.08 8.01 -51.93 -0.42 0.67 16 34 H 0.06 1.19 7.40 -51.93 -0.38 0.80 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.40 4.45 8.46 -40.82 -0.35 4.11 16 39 H 0.12 1.03 7.83 -51.93 -0.41 0.62 16 40 H 0.12 1.01 7.82 -51.93 -0.41 0.61 16 41 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.12 0.42 8.14 -51.92 -0.42 0.00 16 44 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.04 0.90 8.11 -51.93 -0.42 0.47 16 46 H 0.06 1.15 7.98 -51.93 -0.41 0.73 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -35.74 380.39 -7.45 -43.19 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -6.90 Total: 1.96 kcal Atomic # 6 Polarization: 17.87 SS G_CDS: -0.95 Total: 16.92 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: -0.34 Total: -55.15 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: 0.04 Total: -28.86 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.74 -7.45 -43.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150685644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.978 kcal (2) G-P(sol) polarization free energy of solvation -35.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds