Wall clock time and date at job start Sat Apr 11 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99339 * 2 1 4 4 H 1.48501 * 109.47161 * 269.99980 * 3 2 1 5 5 H 1.48497 * 109.47344 * 30.00172 * 3 2 1 6 6 H 1.48497 * 109.46878 * 150.00381 * 3 2 1 7 7 C 1.38809 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99673 * 195.44522 * 7 2 1 9 9 N 1.36932 * 120.00352 * 15.45168 * 7 2 1 10 10 C 1.47511 * 118.75660 * 26.09449 * 9 7 2 11 11 C 1.53572 * 111.03021 * 138.35328 * 10 9 7 12 12 C 1.51543 * 109.57954 * 320.02679 * 11 10 9 13 13 O 1.42146 * 108.75816 * 91.39687 * 12 11 10 14 14 C 1.38019 * 119.43946 * 272.77046 * 13 12 11 15 15 H 1.09002 * 109.46916 * 303.42753 * 14 13 12 16 16 C 1.52998 * 109.47052 * 183.43205 * 14 13 12 17 17 N 1.46506 * 109.46853 * 65.00081 * 16 14 13 18 18 C 1.34785 * 119.99554 * 180.02562 * 17 16 14 19 19 O 1.21276 * 120.00291 * 359.97438 * 18 17 16 20 20 C 1.50704 * 119.99477 * 180.02562 * 18 17 16 21 21 N 1.46499 * 109.46907 * 179.97438 * 20 18 17 22 22 C 1.33877 * 122.76497 * 269.71057 * 21 20 18 23 23 O 1.21222 * 125.39413 * 359.97438 * 22 21 20 24 24 C 1.51308 * 109.20658 * 179.84347 * 22 21 20 25 25 C 1.54231 * 103.55797 * 0.38384 * 24 22 21 26 26 C 1.33876 * 122.76002 * 89.99660 * 21 20 18 27 27 O 1.21226 * 125.39745 * 0.02562 * 26 21 20 28 28 C 1.45120 * 118.76030 * 206.07967 * 9 7 2 29 29 H 0.96995 * 120.00612 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.16861 * 258.75439 * 10 9 7 31 31 H 1.09002 * 109.16813 * 18.01103 * 10 9 7 32 32 H 1.08999 * 109.45563 * 199.99078 * 11 10 9 33 33 H 1.08997 * 109.44862 * 80.05594 * 11 10 9 34 34 H 1.09002 * 109.58736 * 331.61149 * 12 11 10 35 35 H 1.08998 * 109.58384 * 211.18254 * 12 11 10 36 36 H 1.09002 * 109.47542 * 185.00024 * 16 14 13 37 37 H 1.09006 * 109.47603 * 305.00214 * 16 14 13 38 38 H 0.96990 * 120.00327 * 359.97438 * 17 16 14 39 39 H 1.08997 * 109.47183 * 299.99571 * 20 18 17 40 40 H 1.08997 * 109.47550 * 59.99744 * 20 18 17 41 41 H 1.09001 * 110.79786 * 241.77260 * 24 22 21 42 42 H 1.09003 * 110.55203 * 118.87672 * 24 22 21 43 43 H 1.09007 * 110.60541 * 241.26021 * 25 24 22 44 44 H 1.08991 * 110.73845 * 118.35930 * 25 24 22 45 45 H 1.09004 * 109.46167 * 149.28169 * 28 9 7 46 46 H 1.09004 * 109.45622 * 29.32335 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2500 1.6179 0.0000 4 1 2.4975 2.0466 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5476 1.4404 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0611 -1.2190 0.2486 9 7 1.3629 -2.3665 -0.3170 10 6 0.1710 -2.3027 -1.1837 11 6 0.1766 -3.4422 -2.2133 12 6 1.5842 -3.6473 -2.7360 13 8 2.2340 -4.6209 -1.9296 14 6 2.8931 -4.2226 -0.7842 15 1 3.6430 -3.4735 -1.0384 16 6 3.5770 -5.4316 -0.1428 17 7 4.6232 -5.9324 -1.0377 18 6 5.3629 -7.0004 -0.6785 19 8 5.1626 -7.5465 0.3857 20 6 6.4395 -7.5152 -1.5988 21 7 7.0943 -8.6730 -0.9848 22 6 8.1688 -8.5626 -0.1938 23 8 8.7177 -7.5236 0.1038 24 6 8.5874 -9.9399 0.2723 25 6 7.5637 -10.8762 -0.4014 26 6 6.6708 -9.9290 -1.1729 27 8 5.7225 -10.2557 -1.8538 28 6 1.8755 -3.6165 0.2126 29 1 -0.4851 0.8399 -0.0004 30 1 -0.7245 -2.3819 -0.5672 31 1 0.1607 -1.3474 -1.7085 32 1 -0.4845 -3.1866 -3.0413 33 1 -0.1723 -4.3602 -1.7405 34 1 2.1329 -2.7067 -2.6870 35 1 1.5435 -3.9956 -3.7680 36 1 4.0224 -5.1357 0.8071 37 1 2.8405 -6.2164 0.0302 38 1 4.7832 -5.4960 -1.8890 39 1 5.9946 -7.8107 -2.5490 40 1 7.1762 -6.7306 -1.7710 41 1 8.5222 -10.0176 1.3576 42 1 9.5977 -10.1681 -0.0674 43 1 6.9891 -11.4197 0.3487 44 1 8.0622 -11.5701 -1.0781 45 1 1.0509 -4.3142 0.3591 46 1 2.3682 -3.4316 1.1672 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150685644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:41 Heat of formation + Delta-G solvation = -138.405842 kcal Electronic energy + Delta-G solvation = -29999.258620 eV Core-core repulsion = 25696.347106 eV Total energy + Delta-G solvation = -4302.911513 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.96663 -40.93418 -40.14288 -39.66789 -37.07144 -36.91239 -36.03274 -34.45714 -33.67829 -33.44305 -30.61841 -28.96306 -27.23349 -27.10822 -26.85740 -24.42437 -23.33015 -22.37483 -22.11797 -21.35174 -20.51842 -18.96752 -18.86680 -18.50132 -17.70793 -17.50001 -17.45157 -17.28074 -16.78841 -16.47450 -16.27251 -15.84626 -15.61502 -15.50735 -15.28479 -14.92405 -14.88916 -14.72842 -14.42691 -14.29395 -13.97169 -13.73293 -13.52418 -13.26262 -13.15539 -13.01399 -12.80391 -12.54102 -12.44622 -12.09336 -12.08825 -11.81618 -11.78409 -11.66679 -11.51426 -11.35201 -11.12225 -10.75146 -10.56674 -10.31388 -10.23453 -8.76302 -7.92040 -5.39929 0.50346 1.25751 1.40935 1.44274 1.45500 1.54149 1.70373 2.18874 2.47358 2.71257 3.21871 3.22880 3.27168 3.51247 3.59327 3.64632 3.97557 4.01114 4.08709 4.10602 4.18602 4.21046 4.26576 4.32555 4.49188 4.52190 4.63066 4.70626 4.77660 4.78544 4.87023 4.91821 4.93734 5.10415 5.15564 5.20823 5.27931 5.43976 5.58461 5.72449 5.74897 6.28983 6.32242 6.35509 6.70177 6.70587 7.03414 7.11300 7.82990 8.24321 9.13692 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019742 B = 0.002383 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.952933 B =11749.486138 C =12633.004981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.045 4.045 3 Si 0.966 3.034 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.270 1.270 7 C -0.270 4.270 8 H 0.068 0.932 9 N -0.606 5.606 10 C 0.185 3.815 11 C -0.165 4.165 12 C 0.091 3.909 13 O -0.392 6.392 14 C 0.087 3.913 15 H 0.048 0.952 16 C 0.144 3.856 17 N -0.705 5.705 18 C 0.496 3.504 19 O -0.579 6.579 20 C 0.077 3.923 21 N -0.567 5.567 22 C 0.522 3.478 23 O -0.523 6.523 24 C -0.140 4.140 25 C -0.140 4.140 26 C 0.522 3.478 27 O -0.522 6.522 28 C 0.123 3.877 29 H 0.250 0.750 30 H -0.007 1.007 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.417 0.583 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.138 0.862 42 H 0.156 0.844 43 H 0.137 0.863 44 H 0.156 0.844 45 H 0.042 0.958 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.372 -21.482 -6.138 28.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.241 4.241 3 Si 0.794 3.206 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.195 1.195 7 C -0.400 4.400 8 H 0.085 0.915 9 N -0.328 5.328 10 C 0.060 3.940 11 C -0.204 4.204 12 C 0.016 3.984 13 O -0.311 6.311 14 C 0.026 3.974 15 H 0.066 0.934 16 C 0.019 3.981 17 N -0.357 5.357 18 C 0.282 3.718 19 O -0.459 6.459 20 C -0.048 4.048 21 N -0.309 5.309 22 C 0.314 3.686 23 O -0.397 6.397 24 C -0.179 4.179 25 C -0.179 4.179 26 C 0.314 3.686 27 O -0.396 6.396 28 C -0.005 4.005 29 H 0.059 0.941 30 H 0.011 0.989 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.254 0.746 39 H 0.160 0.840 40 H 0.160 0.840 41 H 0.155 0.845 42 H 0.173 0.827 43 H 0.155 0.845 44 H 0.174 0.826 45 H 0.060 0.940 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 16.859 -21.510 -5.626 27.903 hybrid contribution -0.503 2.214 0.015 2.270 sum 16.356 -19.296 -5.611 25.911 Atomic orbital electron populations 1.70228 1.06616 1.25874 1.55301 1.25781 0.96023 1.01444 1.00862 0.85296 0.78048 0.79603 0.77666 1.20904 1.22318 1.19465 1.19511 0.92582 0.85872 1.42063 0.91454 1.44040 1.31546 1.02099 1.55095 1.20784 0.86942 0.96128 0.90131 1.22631 0.98852 0.99162 0.99728 1.22087 0.91268 0.91598 0.93485 1.86102 1.70554 1.38010 1.36463 1.22270 0.93723 0.94189 0.87257 0.93411 1.21187 0.89090 0.95037 0.92756 1.45754 1.35468 1.31149 1.23317 1.21287 0.82991 0.80073 0.87421 1.90681 1.70384 1.59125 1.25715 1.21662 0.95799 0.90489 0.96841 1.46614 1.29254 1.09177 1.45872 1.21789 0.77707 0.93716 0.75404 1.90771 1.57296 1.35578 1.56057 1.22588 1.03227 0.86914 1.05185 1.22593 0.96320 0.97514 1.01452 1.21796 0.83875 0.83505 0.79459 1.90772 1.28548 1.80519 1.39793 1.21551 0.95733 0.87821 0.95361 0.94063 0.98882 0.93442 0.89616 0.92223 0.94025 0.87269 0.90416 0.91673 0.74608 0.84002 0.84009 0.84455 0.82656 0.84478 0.82617 0.93968 0.93152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.60 11.00 21.65 0.24 -54.36 16 2 C -0.05 -2.49 4.89 84.86 0.41 -2.08 16 3 Si 0.97 44.23 29.58 68.60 2.03 46.26 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 7 C -0.27 -14.47 9.46 84.03 0.80 -13.67 16 8 H 0.07 3.53 7.88 -2.91 -0.02 3.50 16 9 N -0.61 -29.69 2.23 -698.15 -1.55 -31.25 16 10 C 0.18 8.84 4.70 86.38 0.41 9.24 16 11 C -0.16 -5.97 5.79 30.31 0.18 -5.80 16 12 C 0.09 2.99 6.37 71.50 0.46 3.45 16 13 O -0.39 -12.99 9.38 -117.91 -1.11 -14.10 16 14 C 0.09 2.97 2.68 31.21 0.08 3.05 16 15 H 0.05 1.70 8.14 -2.39 -0.02 1.69 16 16 C 0.14 4.36 5.34 86.38 0.46 4.83 16 17 N -0.70 -17.97 5.49 -463.03 -2.54 -20.51 16 18 C 0.50 13.49 7.90 87.66 0.69 14.19 16 19 O -0.58 -20.35 16.43 -3.02 -0.05 -20.40 16 20 C 0.08 1.47 6.04 85.63 0.52 1.99 16 21 N -0.57 -10.66 2.04 -760.74 -1.55 -12.22 16 22 C 0.52 9.18 8.08 87.99 0.71 9.89 16 23 O -0.52 -13.37 17.47 -2.85 -0.05 -13.42 16 24 C -0.14 -0.76 7.03 30.46 0.21 -0.54 16 25 C -0.14 -0.75 7.03 30.46 0.21 -0.53 16 26 C 0.52 9.14 8.08 87.99 0.71 9.85 16 27 O -0.52 -13.28 17.48 -2.86 -0.05 -13.33 16 28 C 0.12 5.11 5.12 87.25 0.45 5.55 16 29 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 30 H -0.01 -0.37 8.04 -2.39 -0.02 -0.39 16 31 H 0.05 2.51 6.37 -2.39 -0.02 2.50 16 32 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.06 2.16 8.01 -2.39 -0.02 2.14 16 34 H 0.04 1.55 7.40 -2.39 -0.02 1.54 16 35 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.42 8.51 8.46 -92.72 -0.78 7.73 16 39 H 0.14 2.16 7.83 -2.39 -0.02 2.14 16 40 H 0.14 2.14 7.82 -2.39 -0.02 2.13 16 41 H 0.14 0.45 8.14 -2.39 -0.02 0.44 16 42 H 0.16 -0.16 8.14 -2.39 -0.02 -0.18 16 43 H 0.14 0.44 8.14 -2.38 -0.02 0.42 16 44 H 0.16 -0.17 8.14 -2.39 -0.02 -0.19 16 45 H 0.04 1.74 8.11 -2.38 -0.02 1.72 16 46 H 0.05 2.11 7.98 -2.38 -0.02 2.09 16 Total: -1.00 -81.29 380.39 1.88 -79.41 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.22 Total: 14.50 kcal Atomic # 6 Polarization: 33.12 SS G_CDS: 6.30 Total: 39.42 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -5.41 Total: -118.34 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -1.26 Total: -61.25 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -81.29 1.88 -79.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150685644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.994 kcal (2) G-P(sol) polarization free energy of solvation -81.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds