Wall clock time and date at job start Sat Apr 11 2020 05:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41378 * 126.57875 * 2 1 4 4 C 1.34520 * 106.83779 * 179.83472 * 3 2 1 5 5 O 1.34300 * 108.41931 * 0.43114 * 4 3 2 6 6 C 1.34298 * 109.47772 * 359.72165 * 5 4 3 7 7 C 1.50705 * 125.78997 * 179.97438 * 6 5 4 8 8 C 1.50697 * 109.46946 * 270.04210 * 7 6 5 9 9 O 1.21277 * 120.00049 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99526 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99652 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.46758 * 179.97438 * 11 10 8 13 13 H 1.08996 * 109.47071 * 60.00501 * 12 11 10 14 14 O 1.42896 * 109.47016 * 299.99617 * 12 11 10 15 15 C 1.53001 * 109.46511 * 180.02562 * 12 11 10 16 16 N 1.46901 * 109.46919 * 185.00236 * 15 12 11 17 17 C 1.46899 * 111.00406 * 180.02562 * 16 15 12 18 18 C 1.50697 * 109.47144 * 179.97438 * 17 16 15 19 19 O 1.21292 * 120.00438 * 359.97438 * 18 17 16 20 20 N 1.34779 * 119.99788 * 179.97438 * 18 17 16 21 21 C 1.37092 * 120.00306 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99982 * 0.02562 * 21 20 18 23 23 C 1.38952 * 120.00524 * 180.02562 * 21 20 18 24 24 N 1.31410 * 119.99690 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00053 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47008 * 90.00288 * 25 23 21 27 27 H 1.48506 * 109.47170 * 209.99936 * 25 23 21 28 28 H 1.48496 * 109.47484 * 330.00015 * 25 23 21 29 29 H 1.09002 * 109.47152 * 269.68807 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.68908 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.68888 * 1 2 3 32 32 H 1.08003 * 126.58126 * 359.97438 * 3 2 1 33 33 H 1.07998 * 125.78467 * 180.11291 * 4 3 2 34 34 H 1.09007 * 109.46827 * 30.03898 * 7 6 5 35 35 H 1.08998 * 109.47186 * 150.03749 * 7 6 5 36 36 H 0.96990 * 120.00162 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47123 * 299.99783 * 11 10 8 38 38 H 1.09004 * 109.47267 * 60.00242 * 11 10 8 39 39 H 0.96698 * 114.00482 * 300.00273 * 14 12 11 40 40 H 1.08999 * 109.47408 * 304.99456 * 15 12 11 41 41 H 1.09003 * 109.47477 * 65.00221 * 15 12 11 42 42 H 1.00902 * 110.99653 * 303.95226 * 16 15 12 43 43 H 1.09001 * 109.46516 * 299.99654 * 17 16 15 44 44 H 1.08995 * 109.47489 * 59.99295 * 17 16 15 45 45 H 0.97008 * 120.00236 * 0.02562 * 20 18 17 46 46 H 0.97006 * 119.99983 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6157 0.6810 0.0037 5 8 3.5847 -0.6617 -0.0036 6 6 2.3086 -1.0802 -0.0059 7 6 1.8521 -2.5164 -0.0143 8 6 1.7008 -2.9870 -1.4379 9 8 1.9396 -2.2305 -2.3553 10 7 1.3000 -4.2486 -1.6915 11 6 1.1523 -4.7060 -3.0755 12 6 0.6902 -6.1645 -3.0839 13 1 -0.2679 -6.2451 -2.5705 14 8 1.6588 -6.9749 -2.4153 15 6 0.5366 -6.6423 -4.5293 16 7 -0.0207 -8.0015 -4.5391 17 6 -0.1820 -8.4945 -5.9134 18 6 -0.7540 -9.8884 -5.8831 19 8 -1.0025 -10.4191 -4.8212 20 7 -0.9896 -10.5453 -7.0362 21 6 -1.5095 -11.8135 -7.0088 22 1 -1.7308 -12.2861 -6.0631 23 6 -1.7519 -12.4910 -8.1975 24 7 -1.4822 -11.9162 -9.3480 25 14 -2.4596 -14.2193 -8.1599 26 1 -3.9426 -14.1476 -8.1878 27 1 -1.9784 -14.9771 -9.3429 28 1 -2.0205 -14.9072 -6.9193 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5187 31 1 -0.3633 0.8928 -0.5090 32 1 2.0367 2.1690 -0.0004 33 1 4.5060 1.2923 0.0065 34 1 2.5900 -3.1352 0.4964 35 1 0.8937 -2.5960 0.4986 36 1 1.1094 -4.8537 -0.9578 37 1 0.4139 -4.0875 -3.5857 38 1 2.1105 -4.6259 -3.5889 39 1 2.5372 -6.9516 -2.8188 40 1 -0.1345 -5.9707 -5.0647 41 1 1.5117 -6.6460 -5.0164 42 1 0.5503 -8.6303 -3.9944 43 1 -0.8579 -7.8358 -6.4587 44 1 0.7882 -8.5110 -6.4098 45 1 -0.7906 -10.1210 -7.8856 46 1 -1.6518 -12.3890 -10.1779 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497048579.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:40 Heat of formation + Delta-G solvation = -113.615852 kcal Electronic energy + Delta-G solvation = -27752.647682 eV Core-core repulsion = 23450.811143 eV Total energy + Delta-G solvation = -4301.836539 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.91409 -40.06214 -38.57527 -37.91002 -35.00375 -34.62038 -34.51414 -33.79674 -32.57638 -31.25101 -30.47236 -29.18893 -27.39278 -26.27948 -24.79035 -23.24779 -21.97192 -21.83695 -21.05455 -19.91197 -19.27227 -17.93064 -17.87440 -17.41168 -17.01542 -16.66560 -16.12813 -15.94413 -15.71485 -15.55364 -15.11412 -14.63260 -14.50678 -14.45309 -13.95021 -13.86543 -13.69497 -13.45129 -13.43996 -13.12250 -13.07284 -12.95862 -12.75143 -12.54396 -12.28495 -11.85464 -11.78632 -11.59177 -11.52498 -11.18768 -11.03663 -10.51528 -10.39803 -10.24322 -10.18804 -9.89804 -9.51729 -9.45753 -8.66993 -8.48865 -8.11624 -7.97048 -6.42506 -3.83364 1.36832 2.23770 2.25522 2.57566 2.92804 3.17625 3.26303 3.32197 3.89013 3.95397 4.14091 4.16429 4.22714 4.46025 4.52387 4.58790 4.71574 4.76401 4.77829 4.87074 4.89531 5.09739 5.14469 5.22175 5.28057 5.29079 5.37574 5.45078 5.51678 5.55023 5.69845 5.72624 5.86596 5.87637 5.93813 6.01057 6.23976 6.24103 6.83307 7.10116 7.11698 7.34719 7.54565 7.63668 7.84476 8.05395 8.60315 9.17105 9.53221 10.04675 10.75208 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.041386 B = 0.001374 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.397927 B =20378.355776 C =20437.648327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.163 4.163 3 C -0.211 4.211 4 C -0.036 4.036 5 O -0.172 6.172 6 C 0.000 4.000 7 C -0.060 4.060 8 C 0.512 3.488 9 O -0.529 6.529 10 N -0.722 5.722 11 C 0.089 3.911 12 C 0.098 3.902 13 H 0.118 0.882 14 O -0.554 6.554 15 C 0.031 3.969 16 N -0.664 5.664 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.147 0.853 33 H 0.202 0.798 34 H 0.113 0.887 35 H 0.123 0.877 36 H 0.407 0.593 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.374 0.626 40 H 0.083 0.917 41 H 0.032 0.968 42 H 0.356 0.644 43 H 0.086 0.914 44 H 0.043 0.957 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.960 24.507 17.356 31.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 C -0.230 4.230 4 C -0.103 4.103 5 O -0.068 6.068 6 C -0.050 4.050 7 C -0.100 4.100 8 C 0.298 3.702 9 O -0.405 6.405 10 N -0.375 5.375 11 C -0.036 4.036 12 C 0.038 3.962 13 H 0.135 0.865 14 O -0.359 6.359 15 C -0.100 4.100 16 N -0.297 5.297 17 C -0.083 4.083 18 C 0.225 3.775 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.165 0.835 33 H 0.219 0.781 34 H 0.131 0.869 35 H 0.141 0.859 36 H 0.243 0.757 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.221 0.779 40 H 0.101 0.899 41 H 0.050 0.950 42 H 0.177 0.823 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.025 24.487 17.626 31.220 hybrid contribution 1.008 -0.585 -1.112 1.611 sum 9.033 23.902 16.514 30.424 Atomic orbital electron populations 1.20190 0.89252 1.02816 1.01844 1.20172 0.97062 0.92028 1.07195 1.21694 0.92628 0.99785 1.08916 1.23960 0.99774 0.80481 1.06108 1.83977 1.28573 1.22885 1.71336 1.21203 0.81284 0.94899 1.07623 1.20058 1.04345 0.89928 0.95669 1.20410 0.77018 0.81797 0.91003 1.90761 1.49011 1.54236 1.46479 1.45813 1.69487 1.13025 1.09179 1.22062 1.02491 0.95809 0.83206 1.22245 0.93421 0.86807 0.93682 0.86461 1.86643 1.22765 1.69559 1.56964 1.22541 0.98650 0.92987 0.95832 1.60011 1.55207 1.02232 1.12281 1.21686 0.99877 0.96530 0.90158 1.19783 0.85290 0.87354 0.85025 1.90531 1.56968 1.69051 1.30058 1.41862 1.56158 1.15240 1.06759 1.19715 1.38115 0.90562 0.94578 0.87894 1.25263 0.97757 1.00261 0.94632 1.69613 1.48473 1.38689 0.97541 0.85849 0.79015 0.81529 0.77844 1.20379 1.20941 1.19410 0.91393 0.91832 0.91370 0.83500 0.78092 0.86882 0.85868 0.75720 0.90193 0.91094 0.77894 0.89900 0.94950 0.82338 0.89592 0.93893 0.77466 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 9.99 36.01 0.36 -0.23 16 2 C -0.16 -1.51 6.16 -104.74 -0.65 -2.16 16 3 C -0.21 -1.78 10.87 -39.70 -0.43 -2.22 16 4 C -0.04 -0.29 12.09 29.42 0.36 0.07 16 5 O -0.17 -1.78 10.65 5.73 0.06 -1.72 16 6 C 0.00 0.00 5.81 -35.62 -0.21 -0.20 16 7 C -0.06 -0.40 5.85 -29.03 -0.17 -0.57 16 8 C 0.51 4.79 7.82 -10.98 -0.09 4.70 16 9 O -0.53 -7.36 16.03 5.56 0.09 -7.27 16 10 N -0.72 -5.30 5.45 -60.29 -0.33 -5.63 16 11 C 0.09 0.72 5.34 -4.04 -0.02 0.70 16 12 C 0.10 0.87 3.29 -26.73 -0.09 0.78 16 13 H 0.12 1.14 8.14 -51.93 -0.42 0.72 16 14 O -0.55 -5.08 12.60 -35.23 -0.44 -5.52 16 15 C 0.03 0.33 5.36 -3.82 -0.02 0.31 16 16 N -0.66 -10.26 6.13 -115.06 -0.70 -10.97 16 17 C 0.05 0.86 6.17 -4.98 -0.03 0.83 16 18 C 0.44 10.36 7.82 -10.99 -0.09 10.28 16 19 O -0.58 -15.85 15.78 5.55 0.09 -15.76 16 20 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 25 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 26 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 7.78 -51.93 -0.40 0.04 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.20 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.12 0.48 7.76 -51.93 -0.40 0.08 16 36 H 0.41 2.20 8.35 -40.82 -0.34 1.86 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.37 2.39 9.04 45.56 0.41 2.80 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.36 5.89 7.99 -39.29 -0.31 5.57 16 43 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 399.43 15.07 6.02 6.02 Total: -1.00 -36.77 399.43 -6.85 -43.61 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -5.96 Total: 15.06 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.31 Total: 4.26 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.37 Total: -54.67 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.21 Total: -30.28 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.77 -6.85 -43.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497048579.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.003 kcal (2) G-P(sol) polarization free energy of solvation -36.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds