Wall clock time and date at job start Sat Apr 11 2020 05:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41386 * 126.58049 * 2 1 4 4 C 1.34517 * 106.84427 * 179.97438 * 3 2 1 5 5 O 1.34303 * 108.41394 * 359.73825 * 4 3 2 6 6 C 1.34307 * 109.48126 * 0.43780 * 5 4 3 7 7 C 1.50700 * 125.78918 * 179.82995 * 6 5 4 8 8 C 1.50697 * 109.46617 * 269.68522 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73030 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 C 1.53003 * 109.46708 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.46905 * 304.99283 * 12 11 10 14 14 O 1.42894 * 109.47603 * 64.99900 * 12 11 10 15 15 C 1.52999 * 109.46790 * 185.00148 * 12 11 10 16 16 N 1.46903 * 109.47076 * 179.97438 * 15 12 11 17 17 C 1.46900 * 110.99996 * 179.97438 * 16 15 12 18 18 C 1.50702 * 109.46929 * 179.97438 * 17 16 15 19 19 O 1.21292 * 120.00086 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99622 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99627 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00095 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99703 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00229 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99956 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47454 * 89.99660 * 25 23 21 27 27 H 1.48496 * 109.47475 * 209.99664 * 25 23 21 28 28 H 1.48504 * 109.47213 * 330.00229 * 25 23 21 29 29 H 1.08995 * 109.47692 * 270.04407 * 1 2 3 30 30 H 1.09010 * 109.47271 * 30.04625 * 1 2 3 31 31 H 1.08997 * 109.47452 * 150.03973 * 1 2 3 32 32 H 1.08003 * 126.58053 * 359.97438 * 3 2 1 33 33 H 1.07997 * 125.79001 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.46798 * 149.69413 * 7 6 5 35 35 H 1.08993 * 109.47546 * 29.68966 * 7 6 5 36 36 H 0.97005 * 119.99846 * 359.72750 * 10 8 7 37 37 H 1.08998 * 109.47134 * 299.99552 * 11 10 8 38 38 H 1.08994 * 109.47397 * 59.99843 * 11 10 8 39 39 H 0.96698 * 113.99844 * 59.99373 * 14 12 11 40 40 H 1.09007 * 109.46691 * 299.99266 * 15 12 11 41 41 H 1.08995 * 109.47897 * 59.99393 * 15 12 11 42 42 H 1.00905 * 110.99704 * 56.04583 * 16 15 12 43 43 H 1.08997 * 109.47647 * 300.00051 * 17 16 15 44 44 H 1.09002 * 109.46597 * 60.00415 * 17 16 15 45 45 H 0.96995 * 120.00138 * 0.02562 * 20 18 17 46 46 H 0.97003 * 119.99905 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6811 0.0006 5 8 3.5847 -0.6616 0.0067 6 6 2.3085 -1.0802 0.0005 7 6 1.8522 -2.5164 0.0007 8 6 1.7005 -2.9954 -1.4200 9 8 1.9347 -2.2430 -2.3420 10 7 1.2987 -4.2582 -1.6662 11 6 1.1456 -4.7220 -3.0473 12 6 0.6822 -6.1802 -3.0471 13 1 1.3769 -6.7821 -2.4610 14 8 -0.6235 -6.2651 -2.4728 15 6 0.6421 -6.7028 -4.4845 16 7 0.1979 -8.1030 -4.4843 17 6 0.1466 -8.6393 -5.8510 18 6 -0.3116 -10.0744 -5.8106 19 8 -0.5704 -10.5987 -4.7479 20 7 -0.4337 -10.7752 -6.9553 21 6 -0.8500 -12.0809 -6.9185 22 1 -1.0805 -12.5478 -5.9724 23 6 -0.9754 -12.8036 -8.0987 24 7 -0.6945 -12.2357 -9.2500 25 14 -1.5433 -14.5825 -8.0487 26 1 -3.0239 -14.6326 -8.1521 27 1 -0.9424 -15.3261 -9.1849 28 1 -1.1153 -15.2030 -6.7692 29 1 -0.3634 0.0008 1.0276 30 1 -0.3634 0.8896 -0.5146 31 1 -0.3634 -0.8903 -0.5132 32 1 2.0367 2.1691 -0.0004 33 1 4.5060 1.2924 0.0011 34 1 0.8937 -2.5929 0.5142 35 1 2.5900 -3.1321 0.5150 36 1 1.1111 -4.8599 -0.9288 37 1 0.4051 -4.1060 -3.5575 38 1 2.1016 -4.6443 -3.5649 39 1 -1.2945 -5.7526 -2.9440 40 1 -0.0525 -6.1009 -5.0706 41 1 1.6380 -6.6380 -4.9227 42 1 -0.6954 -8.1989 -4.0248 43 1 -0.5519 -8.0511 -6.4461 44 1 1.1390 -8.5875 -6.2989 45 1 -0.2263 -10.3560 -7.8051 46 1 -0.7824 -12.7401 -10.0739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497048583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:44 Heat of formation + Delta-G solvation = -113.396050 kcal Electronic energy + Delta-G solvation = -27759.795744 eV Core-core repulsion = 23457.968736 eV Total energy + Delta-G solvation = -4301.827007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.91451 -40.06195 -38.57974 -37.90549 -34.99459 -34.62438 -34.52374 -33.79252 -32.57960 -31.24856 -30.47036 -29.19337 -27.39459 -26.28233 -24.79288 -23.25773 -21.96440 -21.83848 -21.05592 -19.91325 -19.27304 -17.92912 -17.87923 -17.41421 -17.03146 -16.63923 -16.11828 -15.94263 -15.75222 -15.55700 -15.04675 -14.67492 -14.53381 -14.45885 -13.89615 -13.85809 -13.73663 -13.49500 -13.43847 -13.11444 -13.06072 -12.95062 -12.75290 -12.53320 -12.28255 -11.84283 -11.78923 -11.60419 -11.52379 -11.19959 -11.03374 -10.52112 -10.39662 -10.24027 -10.18301 -9.90121 -9.51609 -9.46179 -8.67221 -8.48304 -8.10928 -7.96868 -6.42373 -3.83269 1.36698 2.23346 2.25327 2.57664 2.92488 3.17559 3.26353 3.32458 3.88975 3.94185 4.14299 4.16842 4.23109 4.45209 4.52037 4.58362 4.73031 4.76132 4.77363 4.86333 4.88716 5.09650 5.13809 5.21998 5.27465 5.28277 5.37296 5.44453 5.50915 5.55001 5.69201 5.72597 5.85928 5.87327 5.93968 6.01321 6.23732 6.24118 6.83130 7.09313 7.11779 7.35537 7.54706 7.64634 7.83973 8.05580 8.60484 9.17228 9.53374 10.04836 10.75334 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.043349 B = 0.001374 C = 0.001364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.760844 B =20366.274051 C =20520.401969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.163 4.163 3 C -0.212 4.212 4 C -0.035 4.035 5 O -0.172 6.172 6 C 0.001 3.999 7 C -0.060 4.060 8 C 0.512 3.488 9 O -0.529 6.529 10 N -0.722 5.722 11 C 0.089 3.911 12 C 0.099 3.901 13 H 0.116 0.884 14 O -0.553 6.553 15 C 0.030 3.970 16 N -0.663 5.663 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.147 0.853 33 H 0.203 0.797 34 H 0.124 0.876 35 H 0.113 0.887 36 H 0.407 0.593 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.374 0.626 40 H 0.032 0.968 41 H 0.083 0.917 42 H 0.356 0.644 43 H 0.043 0.957 44 H 0.086 0.914 45 H 0.392 0.608 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.863 26.043 17.036 31.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 C -0.231 4.231 4 C -0.103 4.103 5 O -0.068 6.068 6 C -0.050 4.050 7 C -0.100 4.100 8 C 0.298 3.702 9 O -0.405 6.405 10 N -0.375 5.375 11 C -0.035 4.035 12 C 0.039 3.961 13 H 0.134 0.866 14 O -0.358 6.358 15 C -0.101 4.101 16 N -0.297 5.297 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.200 5.200 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.165 0.835 33 H 0.219 0.781 34 H 0.141 0.859 35 H 0.131 0.869 36 H 0.242 0.758 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.221 0.779 40 H 0.050 0.950 41 H 0.101 0.899 42 H 0.177 0.823 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.024 25.300 17.422 31.304 hybrid contribution -1.213 0.190 -1.228 1.736 sum 4.812 25.490 16.195 30.580 Atomic orbital electron populations 1.20183 0.89278 1.02772 1.01835 1.20166 0.97045 0.92033 1.07230 1.21692 0.92630 0.99777 1.08966 1.23962 0.99775 0.80478 1.06047 1.83981 1.28569 1.22888 1.71331 1.21201 0.81284 0.94890 1.07611 1.20057 1.04349 0.89896 0.95709 1.20412 0.76986 0.81805 0.91016 1.90762 1.49113 1.54547 1.46055 1.45833 1.69333 1.13173 1.09186 1.22074 1.02702 0.95498 0.83273 1.22228 0.85644 0.93170 0.95053 0.86580 1.86653 1.18280 1.73998 1.56853 1.22535 1.01771 0.90177 0.95568 1.59987 1.37441 1.15256 1.17010 1.21689 1.01403 0.95296 0.89867 1.19786 0.84937 0.87697 0.85029 1.90532 1.55141 1.71155 1.29751 1.41862 1.58921 1.12109 1.07142 1.19714 1.41308 0.87005 0.94931 0.87892 1.25262 0.97565 1.00440 0.94648 1.69614 1.48921 1.37932 0.97858 0.85851 0.78675 0.81742 0.77979 1.20424 1.20922 1.19384 0.91400 0.91396 0.91862 0.83507 0.78081 0.85854 0.86884 0.75773 0.91039 0.90246 0.77931 0.94983 0.89895 0.82314 0.93896 0.89606 0.77468 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 9.99 36.00 0.36 -0.22 16 2 C -0.16 -1.51 6.16 -104.75 -0.65 -2.15 16 3 C -0.21 -1.78 10.87 -39.70 -0.43 -2.21 16 4 C -0.03 -0.28 12.09 29.42 0.36 0.07 16 5 O -0.17 -1.78 10.65 5.70 0.06 -1.72 16 6 C 0.00 0.00 5.81 -35.63 -0.21 -0.20 16 7 C -0.06 -0.40 5.85 -29.04 -0.17 -0.57 16 8 C 0.51 4.78 7.82 -10.98 -0.09 4.70 16 9 O -0.53 -7.35 16.03 5.56 0.09 -7.26 16 10 N -0.72 -5.29 5.50 -60.30 -0.33 -5.62 16 11 C 0.09 0.72 5.31 -4.04 -0.02 0.70 16 12 C 0.10 0.87 3.27 -26.73 -0.09 0.78 16 13 H 0.12 1.12 8.14 -51.92 -0.42 0.70 16 14 O -0.55 -5.10 12.62 -35.23 -0.44 -5.55 16 15 C 0.03 0.32 5.39 -3.82 -0.02 0.30 16 16 N -0.66 -10.26 6.13 -115.05 -0.70 -10.96 16 17 C 0.05 0.86 6.17 -4.97 -0.03 0.83 16 18 C 0.44 10.37 7.82 -10.98 -0.09 10.28 16 19 O -0.58 -15.85 15.78 5.55 0.09 -15.77 16 20 N -0.56 -14.27 5.29 -10.96 -0.06 -14.32 16 21 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 22 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 23 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.49 13.05 55.50 0.72 -23.76 16 25 Si 0.93 21.02 29.55 -169.99 -5.02 15.99 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.06 0.44 7.78 -51.93 -0.40 0.03 16 32 H 0.15 0.92 8.06 -52.48 -0.42 0.49 16 33 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.12 0.48 7.76 -51.93 -0.40 0.08 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.41 2.17 8.47 -40.82 -0.35 1.83 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.37 2.39 9.04 45.56 0.41 2.80 16 40 H 0.03 0.31 8.14 -51.92 -0.42 -0.12 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.36 5.86 7.82 -39.29 -0.31 5.55 16 43 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 46 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -36.88 399.45 -6.85 -43.72 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: -5.95 Total: 14.95 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -1.31 Total: 4.29 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.37 Total: -54.67 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.21 Total: -30.30 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.88 -6.85 -43.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497048583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.671 kcal (2) G-P(sol) polarization free energy of solvation -36.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds