Wall clock time and date at job start Sat Apr 11 2020 05:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.41386 * 126.58049 * 2 1 4 4 C 1.34517 * 106.84427 * 179.97438 * 3 2 1 5 5 O 1.34303 * 108.41394 * 359.73825 * 4 3 2 6 6 C 1.34307 * 109.48126 * 0.43780 * 5 4 3 7 7 C 1.50700 * 125.78918 * 179.82995 * 6 5 4 8 8 C 1.50697 * 109.46617 * 269.68522 * 7 6 5 9 9 O 1.21283 * 120.00521 * 359.73030 * 8 7 6 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 6 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 C 1.53003 * 109.46708 * 180.02562 * 11 10 8 13 13 H 1.09007 * 109.46905 * 304.99283 * 12 11 10 14 14 O 1.42894 * 109.47603 * 64.99900 * 12 11 10 15 15 C 1.52999 * 109.46790 * 185.00148 * 12 11 10 16 16 N 1.46903 * 109.47076 * 179.97438 * 15 12 11 17 17 C 1.46900 * 110.99996 * 179.97438 * 16 15 12 18 18 C 1.50702 * 109.46929 * 179.97438 * 17 16 15 19 19 O 1.21292 * 120.00086 * 0.02562 * 18 17 16 20 20 N 1.34780 * 119.99622 * 180.02562 * 18 17 16 21 21 C 1.37099 * 119.99627 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00095 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99703 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00229 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99956 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47454 * 89.99660 * 25 23 21 27 27 H 1.48496 * 109.47475 * 209.99664 * 25 23 21 28 28 H 1.48504 * 109.47213 * 330.00229 * 25 23 21 29 29 H 1.08995 * 109.47692 * 270.04407 * 1 2 3 30 30 H 1.09010 * 109.47271 * 30.04625 * 1 2 3 31 31 H 1.08997 * 109.47452 * 150.03973 * 1 2 3 32 32 H 1.08003 * 126.58053 * 359.97438 * 3 2 1 33 33 H 1.07997 * 125.79001 * 180.02562 * 4 3 2 34 34 H 1.09001 * 109.46798 * 149.69413 * 7 6 5 35 35 H 1.08993 * 109.47546 * 29.68966 * 7 6 5 36 36 H 0.97005 * 119.99846 * 359.72750 * 10 8 7 37 37 H 1.08998 * 109.47134 * 299.99552 * 11 10 8 38 38 H 1.08994 * 109.47397 * 59.99843 * 11 10 8 39 39 H 0.96698 * 113.99844 * 59.99373 * 14 12 11 40 40 H 1.09007 * 109.46691 * 299.99266 * 15 12 11 41 41 H 1.08995 * 109.47897 * 59.99393 * 15 12 11 42 42 H 1.00905 * 110.99704 * 56.04583 * 16 15 12 43 43 H 1.08997 * 109.47647 * 300.00051 * 17 16 15 44 44 H 1.09002 * 109.46597 * 60.00415 * 17 16 15 45 45 H 0.96995 * 120.00138 * 0.02562 * 20 18 17 46 46 H 0.97003 * 119.99905 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6811 0.0006 5 8 3.5847 -0.6616 0.0067 6 6 2.3085 -1.0802 0.0005 7 6 1.8522 -2.5164 0.0007 8 6 1.7005 -2.9954 -1.4200 9 8 1.9347 -2.2430 -2.3420 10 7 1.2987 -4.2582 -1.6662 11 6 1.1456 -4.7220 -3.0473 12 6 0.6822 -6.1802 -3.0471 13 1 1.3769 -6.7821 -2.4610 14 8 -0.6235 -6.2651 -2.4728 15 6 0.6421 -6.7028 -4.4845 16 7 0.1979 -8.1030 -4.4843 17 6 0.1466 -8.6393 -5.8510 18 6 -0.3116 -10.0744 -5.8106 19 8 -0.5704 -10.5987 -4.7479 20 7 -0.4337 -10.7752 -6.9553 21 6 -0.8500 -12.0809 -6.9185 22 1 -1.0805 -12.5478 -5.9724 23 6 -0.9754 -12.8036 -8.0987 24 7 -0.6945 -12.2357 -9.2500 25 14 -1.5433 -14.5825 -8.0487 26 1 -3.0239 -14.6326 -8.1521 27 1 -0.9424 -15.3261 -9.1849 28 1 -1.1153 -15.2030 -6.7692 29 1 -0.3634 0.0008 1.0276 30 1 -0.3634 0.8896 -0.5146 31 1 -0.3634 -0.8903 -0.5132 32 1 2.0367 2.1691 -0.0004 33 1 4.5060 1.2924 0.0011 34 1 0.8937 -2.5929 0.5142 35 1 2.5900 -3.1321 0.5150 36 1 1.1111 -4.8599 -0.9288 37 1 0.4051 -4.1060 -3.5575 38 1 2.1016 -4.6443 -3.5649 39 1 -1.2945 -5.7526 -2.9440 40 1 -0.0525 -6.1009 -5.0706 41 1 1.6380 -6.6380 -4.9227 42 1 -0.6954 -8.1989 -4.0248 43 1 -0.5519 -8.0511 -6.4461 44 1 1.1390 -8.5875 -6.2989 45 1 -0.2263 -10.3560 -7.8051 46 1 -0.7824 -12.7401 -10.0739 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497048583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:43 Heat of formation + Delta-G solvation = -145.442247 kcal Electronic energy + Delta-G solvation = -27761.185371 eV Core-core repulsion = 23457.968736 eV Total energy + Delta-G solvation = -4303.216635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.52995 -40.80252 -40.17189 -38.98143 -36.30605 -35.66245 -35.28728 -35.21165 -33.26963 -33.16775 -31.34338 -29.84261 -28.56636 -27.16917 -26.26008 -24.46475 -22.73573 -22.45575 -21.75478 -21.09446 -20.52028 -19.91270 -18.56708 -18.23818 -17.92523 -17.44474 -17.26124 -16.83914 -16.79112 -16.49132 -16.28677 -15.95596 -15.93596 -15.33030 -15.24052 -14.92748 -14.56440 -14.42741 -14.27941 -14.03909 -13.95613 -13.65219 -13.62199 -13.45108 -13.31197 -13.16478 -12.97851 -12.88903 -12.69448 -12.41744 -12.34770 -12.11935 -11.97268 -11.50586 -11.29431 -10.98560 -10.51365 -10.33233 -10.15865 -10.01543 -9.32713 -9.27981 -8.46678 -5.95554 0.74418 1.38443 1.42448 1.55224 1.56568 1.62784 2.00382 2.05318 2.27055 2.32941 2.91400 3.20681 3.44311 3.50740 3.61271 3.85667 3.91413 3.98567 4.04066 4.07248 4.14467 4.27767 4.31878 4.44015 4.45194 4.50895 4.56437 4.62939 4.70157 4.76395 4.80123 4.88679 4.97058 5.09956 5.14081 5.32160 5.35724 5.41064 5.67445 5.86673 6.08711 6.21536 6.40960 6.49076 6.60156 6.79171 7.12689 7.19235 7.56221 8.11654 8.70623 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.043349 B = 0.001374 C = 0.001364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.760844 B =20366.274051 C =20520.401969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.181 4.181 3 C -0.230 4.230 4 C -0.042 4.042 5 O -0.193 6.193 6 C -0.024 4.024 7 C -0.056 4.056 8 C 0.513 3.487 9 O -0.580 6.580 10 N -0.710 5.710 11 C 0.097 3.903 12 C 0.115 3.885 13 H 0.109 0.891 14 O -0.564 6.564 15 C 0.030 3.970 16 N -0.679 5.679 17 C 0.065 3.935 18 C 0.436 3.564 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.336 4.336 22 H 0.079 0.921 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.273 1.273 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.164 0.836 33 H 0.234 0.766 34 H 0.152 0.848 35 H 0.135 0.865 36 H 0.419 0.581 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.386 0.614 40 H 0.050 0.950 41 H 0.091 0.909 42 H 0.349 0.651 43 H 0.067 0.933 44 H 0.104 0.896 45 H 0.397 0.603 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.728 26.665 17.387 32.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.182 4.182 3 C -0.248 4.248 4 C -0.108 4.108 5 O -0.090 6.090 6 C -0.073 4.073 7 C -0.095 4.095 8 C 0.300 3.700 9 O -0.460 6.460 10 N -0.363 5.363 11 C -0.028 4.028 12 C 0.055 3.945 13 H 0.127 0.873 14 O -0.371 6.371 15 C -0.100 4.100 16 N -0.313 5.313 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.198 1.198 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.181 0.819 33 H 0.250 0.750 34 H 0.170 0.830 35 H 0.153 0.847 36 H 0.256 0.744 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.236 0.764 40 H 0.068 0.932 41 H 0.109 0.891 42 H 0.168 0.832 43 H 0.085 0.915 44 H 0.122 0.878 45 H 0.230 0.770 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.884 25.930 17.775 31.984 hybrid contribution -1.165 0.069 -1.308 1.753 sum 4.719 26.000 16.468 31.136 Atomic orbital electron populations 1.20222 0.88024 1.02750 1.02891 1.20599 0.98237 0.92395 1.06990 1.22052 0.92905 1.00607 1.09279 1.24678 1.01071 0.80053 1.05044 1.83966 1.29296 1.23985 1.71786 1.21736 0.81146 0.96290 1.08174 1.20191 1.06394 0.88756 0.94159 1.20862 0.75909 0.81641 0.91617 1.90739 1.51574 1.55941 1.47727 1.45744 1.68302 1.12855 1.09370 1.21931 1.02363 0.94853 0.83670 1.21990 0.85562 0.93222 0.93766 0.87307 1.86630 1.18703 1.74506 1.57288 1.22642 1.02400 0.87756 0.97163 1.59965 1.37127 1.18354 1.15809 1.21546 1.02584 0.91029 0.91627 1.20917 0.83049 0.89920 0.83752 1.90498 1.56522 1.72816 1.31132 1.41935 1.59466 1.11686 1.07958 1.19681 1.43585 0.88704 0.94561 0.90326 1.26032 0.97001 1.04159 0.93977 1.69672 1.48806 1.39345 0.98274 0.84927 0.78527 0.76896 0.77982 1.19575 1.19557 1.19810 0.89728 0.91280 0.92000 0.81875 0.75025 0.83020 0.84711 0.74379 0.90985 0.90823 0.76429 0.93169 0.89093 0.83159 0.91477 0.87788 0.76959 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.06 9.99 71.23 0.71 -0.34 16 2 C -0.18 -3.23 6.16 -19.94 -0.12 -3.35 16 3 C -0.23 -3.74 10.87 22.19 0.24 -3.50 16 4 C -0.04 -0.65 12.09 66.97 0.81 0.16 16 5 O -0.19 -3.98 10.65 -2.53 -0.03 -4.00 16 6 C -0.02 -0.44 5.81 24.83 0.14 -0.29 16 7 C -0.06 -0.66 5.85 29.10 0.17 -0.49 16 8 C 0.51 9.06 7.82 87.65 0.69 9.75 16 9 O -0.58 -16.10 16.03 -3.04 -0.05 -16.15 16 10 N -0.71 -9.30 5.50 -463.06 -2.55 -11.85 16 11 C 0.10 1.42 5.31 86.38 0.46 1.88 16 12 C 0.11 1.82 3.27 30.59 0.10 1.92 16 13 H 0.11 1.93 8.14 -2.38 -0.02 1.91 16 14 O -0.56 -9.42 12.62 -148.98 -1.88 -11.30 16 15 C 0.03 0.58 5.39 86.30 0.47 1.04 16 16 N -0.68 -20.07 6.13 -517.92 -3.17 -23.25 16 17 C 0.06 2.13 6.17 85.56 0.53 2.66 16 18 C 0.44 20.63 7.82 87.66 0.69 21.31 16 19 O -0.62 -34.61 15.78 -3.07 -0.05 -34.66 16 20 N -0.57 -29.32 5.29 -306.98 -1.62 -30.94 16 21 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 22 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.17 16 24 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 25 Si 0.99 42.82 29.55 68.60 2.03 44.85 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 28 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 29 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 31 H 0.06 0.79 7.78 -2.39 -0.02 0.77 16 32 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.23 1.64 8.06 -2.91 -0.02 1.62 16 34 H 0.15 0.83 7.76 -2.39 -0.02 0.81 16 35 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.42 3.61 8.47 -92.70 -0.79 2.82 16 37 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.39 4.17 9.04 -74.06 -0.67 3.50 16 40 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 41 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.35 11.18 7.82 -89.69 -0.70 10.47 16 43 H 0.07 1.91 8.14 -2.39 -0.02 1.90 16 44 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 45 H 0.40 19.19 7.90 -92.71 -0.73 18.45 16 46 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -81.23 399.45 -2.72 -83.95 By element: Atomic # 1 Polarization: 42.10 SS G_CDS: -1.84 Total: 40.26 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 6.16 Total: 12.30 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -7.06 Total: -115.24 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -2.00 Total: -66.11 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -81.23 -2.72 -83.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497048583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.497 kcal (2) G-P(sol) polarization free energy of solvation -81.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds