Wall clock time and date at job start Sat Apr 11 2020 05:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00022 * 2 1 4 4 H 1.48503 * 109.47369 * 270.00140 * 3 2 1 5 5 H 1.48503 * 109.47272 * 29.99864 * 3 2 1 6 6 H 1.48495 * 109.47397 * 149.99911 * 3 2 1 7 7 C 1.38806 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00008 * 0.02562 * 7 2 1 9 9 N 1.36938 * 120.00339 * 179.97438 * 7 2 1 10 10 C 1.46497 * 120.00091 * 173.59381 * 9 7 2 11 11 C 1.53001 * 109.54424 * 62.70911 * 10 9 7 12 12 N 1.46497 * 109.46802 * 54.57763 * 11 10 9 13 13 C 1.34783 * 119.99606 * 176.05511 * 12 11 10 14 14 O 1.21280 * 120.00138 * 0.27407 * 13 12 11 15 15 C 1.50704 * 119.99810 * 180.02562 * 13 12 11 16 16 C 1.53245 * 109.61789 * 299.07477 * 15 13 12 17 17 C 1.50594 * 109.14617 * 184.64727 * 16 15 13 18 18 O 1.21228 * 119.35231 * 209.10903 * 17 16 15 19 19 N 1.34135 * 121.28723 * 29.11384 * 17 16 15 20 20 C 1.34151 * 122.58533 * 359.44970 * 19 17 16 21 21 O 1.21219 * 119.35699 * 180.54668 * 20 19 17 22 22 C 1.50585 * 121.27604 * 0.52571 * 20 19 17 23 23 C 1.53182 * 109.54150 * 182.88635 * 10 9 7 24 24 C 1.53104 * 109.15868 * 63.06428 * 23 10 9 25 25 O 1.42905 * 109.48374 * 57.47277 * 24 23 10 26 26 C 1.42904 * 114.10030 * 298.88726 * 25 24 23 27 27 C 1.53093 * 109.41098 * 61.16026 * 26 25 24 28 28 H 0.97003 * 120.00102 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99715 * 353.60210 * 9 7 2 30 30 H 1.08995 * 109.46798 * 294.58249 * 11 10 9 31 31 H 1.08993 * 109.46894 * 174.58081 * 11 10 9 32 32 H 0.97001 * 120.00649 * 356.05519 * 12 11 10 33 33 H 1.09002 * 109.62236 * 59.62790 * 15 13 12 34 34 H 1.08998 * 109.52267 * 304.56237 * 16 15 13 35 35 H 1.08994 * 109.52257 * 64.76042 * 16 15 13 36 36 H 0.96991 * 118.71355 * 179.43320 * 19 17 16 37 37 H 1.08999 * 109.52078 * 211.01679 * 22 20 19 38 38 H 1.09008 * 109.52592 * 90.83679 * 22 20 19 39 39 H 1.09004 * 109.52016 * 182.88386 * 23 10 9 40 40 H 1.09001 * 109.52133 * 303.06837 * 23 10 9 41 41 H 1.09003 * 109.40567 * 297.49597 * 24 23 10 42 42 H 1.08999 * 109.49155 * 177.50653 * 24 23 10 43 43 H 1.09000 * 109.48048 * 301.18165 * 26 25 24 44 44 H 1.08997 * 109.48878 * 181.14825 * 26 25 24 45 45 H 1.09005 * 109.51849 * 182.48481 * 27 26 25 46 46 H 1.09001 * 109.57344 * 62.32792 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4629 0.1421 11 6 3.7951 -3.3756 -1.0442 12 7 4.0763 -2.6663 -2.2948 13 6 3.9459 -3.3040 -3.4750 14 8 3.5911 -4.4634 -3.5020 15 6 4.2358 -2.5746 -4.7616 16 6 3.2852 -1.3808 -4.9016 17 6 3.5058 -0.7281 -6.2407 18 8 3.2951 0.4592 -6.3649 19 7 3.9309 -1.4349 -7.2985 20 6 4.1940 -2.7486 -7.2312 21 8 4.5850 -3.3279 -8.2216 22 6 4.0134 -3.5173 -5.9490 23 6 5.6170 -2.1794 0.1827 24 6 5.9357 -1.3328 1.4179 25 8 5.4959 -2.0185 2.5921 26 6 4.0892 -2.2670 2.6303 27 6 3.6966 -3.1529 1.4450 28 1 -0.4850 0.8401 -0.0004 29 1 3.8646 -0.3674 -0.0943 30 1 2.7424 -3.6570 -1.0148 31 1 4.4125 -4.2720 -0.9880 32 1 4.3562 -1.7379 -2.2735 33 1 5.2684 -2.2254 -4.7598 34 1 2.2538 -1.7261 -4.8299 35 1 3.4853 -0.6608 -4.1082 36 1 4.0526 -0.9782 -8.1455 37 1 4.7365 -4.3319 -5.9078 38 1 3.0028 -3.9238 -5.9071 39 1 6.1636 -3.1209 0.2368 40 1 5.9100 -1.6382 -0.7170 41 1 5.4218 -0.3745 1.3426 42 1 7.0111 -1.1650 1.4762 43 1 3.5512 -1.3209 2.5708 44 1 3.8343 -2.7722 3.5618 45 1 2.6176 -3.3073 1.4473 46 1 4.2025 -4.1151 1.5250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500589382.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:40:47 Heat of formation + Delta-G solvation = -144.796028 kcal Electronic energy + Delta-G solvation = -31156.471030 eV Core-core repulsion = 26853.282418 eV Total energy + Delta-G solvation = -4303.188613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.78127 -39.96192 -39.08999 -39.04677 -36.15153 -35.58480 -34.05510 -33.64430 -32.27907 -30.82813 -29.95423 -29.09855 -27.43554 -24.99845 -23.94867 -23.42965 -23.08490 -22.06256 -20.27848 -19.58726 -18.72143 -18.03731 -17.96744 -17.55906 -17.24541 -16.10802 -15.92007 -15.69172 -15.61289 -15.39098 -14.86939 -14.80154 -14.59615 -14.56635 -14.36543 -14.24320 -13.72005 -13.47492 -13.18792 -12.81632 -12.65772 -12.51430 -12.30816 -12.03137 -11.76251 -11.61170 -11.55077 -11.11537 -11.09362 -11.01607 -10.98215 -10.54707 -10.51982 -10.46933 -10.16639 -9.94543 -9.77731 -9.67034 -9.36321 -8.95255 -8.74423 -7.51385 -5.94103 -3.33998 1.23476 2.45162 2.49377 2.66478 3.22069 3.22853 3.25518 3.34480 3.70160 4.11843 4.20240 4.29707 4.41146 4.41397 4.67117 4.87273 4.95155 5.00767 5.10835 5.15580 5.25753 5.28481 5.35839 5.48248 5.51714 5.56169 5.60206 5.74043 5.80325 5.88274 5.90798 6.04778 6.09857 6.19008 6.35587 6.40670 6.54922 6.55221 6.60467 6.71438 7.07587 7.54329 7.54591 7.67847 7.78930 8.23114 8.32025 8.98735 9.70754 9.88307 11.23081 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011536 B = 0.003987 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.508337 B = 7020.997284 C = 8339.758436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.015 3.985 3 Si 0.873 3.127 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.246 4.246 8 H 0.093 0.907 9 N -0.739 5.739 10 C 0.195 3.805 11 C 0.118 3.882 12 N -0.697 5.697 13 C 0.519 3.481 14 O -0.542 6.542 15 C -0.113 4.113 16 C -0.137 4.137 17 C 0.529 3.471 18 O -0.495 6.495 19 N -0.677 5.677 20 C 0.529 3.471 21 O -0.504 6.504 22 C -0.122 4.122 23 C -0.155 4.155 24 C 0.065 3.935 25 O -0.391 6.391 26 C 0.069 3.931 27 C -0.151 4.151 28 H 0.261 0.739 29 H 0.361 0.639 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.401 0.599 33 H 0.110 0.890 34 H 0.124 0.876 35 H 0.125 0.875 36 H 0.411 0.589 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.601 -4.330 -5.881 13.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.182 4.182 3 Si 0.703 3.297 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.376 4.376 8 H 0.110 0.890 9 N -0.382 5.382 10 C 0.103 3.897 11 C -0.008 4.008 12 N -0.347 5.347 13 C 0.303 3.697 14 O -0.420 6.420 15 C -0.134 4.134 16 C -0.177 4.177 17 C 0.318 3.682 18 O -0.367 6.367 19 N -0.343 5.343 20 C 0.318 3.682 21 O -0.376 6.376 22 C -0.162 4.162 23 C -0.193 4.193 24 C -0.012 4.012 25 O -0.310 6.310 26 C -0.008 4.008 27 C -0.191 4.191 28 H 0.071 0.929 29 H 0.194 0.806 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.236 0.764 33 H 0.128 0.872 34 H 0.142 0.858 35 H 0.143 0.857 36 H 0.251 0.749 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.264 -5.045 -6.071 13.755 hybrid contribution 0.352 2.116 -0.628 2.235 sum 11.616 -2.930 -6.699 13.725 Atomic orbital electron populations 1.69682 1.05124 1.25975 1.56374 1.24654 0.95052 0.96923 1.01536 0.86761 0.79382 0.85591 0.77934 1.20885 1.21758 1.20307 1.18875 0.80105 0.94548 1.44058 0.88972 1.42868 1.04233 1.02280 1.88849 1.19798 0.89856 0.87689 0.92339 1.21853 1.01630 0.94265 0.83009 1.45737 1.67596 1.15788 1.05558 1.19894 0.78159 0.87012 0.84611 1.90719 1.47098 1.16923 1.87268 1.21498 1.02062 0.95580 0.94294 1.22001 1.03286 0.98005 0.94402 1.20871 0.74331 0.86858 0.86166 1.90827 1.46110 1.15114 1.84621 1.44918 1.62581 1.11367 1.15395 1.20991 0.74578 0.81223 0.91400 1.90789 1.41832 1.67545 1.37480 1.21775 1.07985 0.98294 0.88142 1.22414 0.96688 1.01428 0.98776 1.22459 0.99075 0.94763 0.84939 1.87826 1.24421 1.78109 1.40654 1.22480 0.80771 0.99919 0.97606 1.22420 1.03024 0.98077 0.95597 0.92888 0.80557 0.90852 0.92229 0.76383 0.87176 0.85764 0.85689 0.74917 0.86003 0.85859 0.90664 0.91301 0.92990 0.89831 0.91582 0.89957 0.89745 0.92319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.35 13.97 55.49 0.78 -25.58 16 2 C 0.02 0.39 5.50 -17.43 -0.10 0.29 16 3 Si 0.87 19.55 27.67 -169.99 -4.70 14.84 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -5.76 6.62 56.52 0.37 -5.38 16 7 C -0.25 -5.68 9.15 -15.06 -0.14 -5.82 16 8 H 0.09 2.37 7.02 -52.48 -0.37 2.00 16 9 N -0.74 -13.43 3.38 -47.06 -0.16 -13.59 16 10 C 0.19 2.91 0.41 -131.64 -0.05 2.85 16 11 C 0.12 1.74 4.38 -4.04 -0.02 1.73 16 12 N -0.70 -9.00 5.04 -60.30 -0.30 -9.31 16 13 C 0.52 6.52 7.16 -10.98 -0.08 6.44 16 14 O -0.54 -8.61 15.94 5.56 0.09 -8.53 16 15 C -0.11 -1.01 2.66 -91.52 -0.24 -1.26 16 16 C -0.14 -1.35 5.24 -27.81 -0.15 -1.50 16 17 C 0.53 5.71 7.74 -11.32 -0.09 5.62 16 18 O -0.50 -7.20 17.88 5.60 0.10 -7.10 16 19 N -0.68 -6.27 5.09 -11.75 -0.06 -6.33 16 20 C 0.53 5.25 7.74 -11.32 -0.09 5.16 16 21 O -0.50 -6.55 17.87 5.61 0.10 -6.45 16 22 C -0.12 -1.09 4.70 -27.82 -0.13 -1.22 16 23 C -0.15 -1.92 4.80 -26.58 -0.13 -2.05 16 24 C 0.06 0.87 6.67 37.21 0.25 1.12 16 25 O -0.39 -6.06 10.77 -35.23 -0.38 -6.44 16 26 C 0.07 1.07 6.68 37.21 0.25 1.32 16 27 C -0.15 -2.31 4.78 -26.59 -0.13 -2.44 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.36 6.57 4.78 -40.82 -0.19 6.38 16 30 H 0.07 1.30 7.49 -51.93 -0.39 0.91 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.40 4.77 7.02 -40.82 -0.29 4.49 16 33 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.12 1.28 7.77 -51.93 -0.40 0.88 16 36 H 0.41 3.44 8.79 -40.82 -0.36 3.09 16 37 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.12 1.12 7.98 -51.92 -0.41 0.71 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.75 7.41 -51.93 -0.38 0.36 16 41 H 0.05 0.77 7.16 -51.93 -0.37 0.40 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 1.19 7.75 -51.93 -0.40 0.79 16 44 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.08 1.45 7.17 -51.93 -0.37 1.08 16 46 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 369.85 15.07 5.57 5.57 Total: -1.00 -31.94 369.85 -6.30 -38.23 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -6.49 Total: 14.43 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: -0.84 Total: 10.24 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: 0.25 Total: -54.80 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.09 Total: -28.51 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.70 Total: 14.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.94 -6.30 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500589382.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.563 kcal (2) G-P(sol) polarization free energy of solvation -31.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds