Wall clock time and date at job start Sat Apr 11 2020 05:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35451 * 126.77234 * 2 1 4 4 C 1.41383 * 103.98182 * 180.09535 * 3 2 1 5 5 C 1.50703 * 126.79961 * 179.88860 * 4 3 2 6 6 O 1.42891 * 109.47290 * 359.71211 * 5 4 3 7 7 C 1.42901 * 113.99893 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46869 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00493 * 359.97438 * 8 7 6 10 10 N 1.34785 * 119.99770 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99737 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46770 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.51307 * 304.88962 * 12 11 10 14 14 C 1.53297 * 109.51021 * 184.74348 * 12 11 10 15 15 N 1.47151 * 108.38330 * 187.77121 * 14 12 11 16 16 C 1.36940 * 120.98208 * 230.51089 * 15 14 12 17 17 H 1.08002 * 119.99791 * 26.25375 * 16 15 14 18 18 C 1.38806 * 120.00328 * 206.24736 * 16 15 14 19 19 N 1.31628 * 119.99850 * 16.92785 * 18 16 15 20 20 Si 1.86803 * 120.00368 * 196.92617 * 18 16 15 21 21 H 1.48496 * 109.47175 * 90.00153 * 20 18 16 22 22 H 1.48502 * 109.47315 * 210.00245 * 20 18 16 23 23 H 1.48494 * 109.47146 * 330.00274 * 20 18 16 24 24 C 1.47146 * 118.03751 * 50.53854 * 15 14 12 25 25 C 1.53301 * 108.38364 * 309.46424 * 24 15 14 26 26 O 1.42960 * 109.51411 * 64.99825 * 12 11 10 27 27 N 1.30174 * 106.39781 * 359.63244 * 4 3 2 28 28 O 1.20926 * 111.60131 * 0.23613 * 27 4 3 29 29 H 1.08994 * 109.46659 * 180.29631 * 1 2 3 30 30 H 1.08997 * 109.46815 * 300.29691 * 1 2 3 31 31 H 1.08998 * 109.46778 * 60.29899 * 1 2 3 32 32 H 1.07994 * 128.00988 * 359.96879 * 3 2 1 33 33 H 1.09003 * 109.46951 * 239.70900 * 5 4 3 34 34 H 1.09000 * 109.47141 * 119.71873 * 5 4 3 35 35 H 1.08999 * 109.47338 * 60.00584 * 7 6 5 36 36 H 1.09004 * 109.47187 * 299.99949 * 7 6 5 37 37 H 0.96991 * 119.99964 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47442 * 59.99711 * 11 10 8 39 39 H 1.09004 * 109.46904 * 299.99673 * 11 10 8 40 40 H 1.08999 * 109.68180 * 307.49620 * 14 12 11 41 41 H 1.09006 * 109.68374 * 68.05114 * 14 12 11 42 42 H 0.96998 * 119.99748 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.68419 * 69.18648 * 24 15 14 44 44 H 1.08997 * 109.68532 * 189.70681 * 24 15 14 45 45 H 1.09000 * 109.50840 * 292.37683 * 25 24 15 46 46 H 1.08993 * 109.51579 * 172.22660 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5373 -0.0023 5 6 4.9211 1.3002 -0.0056 6 8 4.6500 2.7031 -0.0129 7 6 5.8215 3.5214 -0.0172 8 6 5.4196 4.9738 -0.0241 9 8 4.2456 5.2782 -0.0258 10 7 6.3649 5.9346 -0.0295 11 6 5.9742 7.3465 -0.0357 12 6 7.2284 8.2227 -0.0417 13 1 7.8647 7.9534 0.8015 14 6 6.8237 9.6969 0.0714 15 7 8.0248 10.5242 -0.1245 16 6 8.3517 11.5138 0.7639 17 1 8.0247 11.4469 1.7910 18 6 9.1035 12.6026 0.3443 19 7 9.2215 12.8651 -0.9401 20 14 9.9476 13.6954 1.6024 21 1 11.3112 13.1745 1.8750 22 1 10.0431 15.0790 1.0716 23 1 9.1594 13.7015 2.8609 24 6 8.8638 10.2573 -1.3035 25 6 9.1691 8.7557 -1.3496 26 8 7.9443 8.0234 -1.2630 27 7 3.4765 -0.7563 0.0046 28 8 2.3096 -1.0735 0.0060 29 1 -0.3632 -1.0276 0.0053 30 1 -0.3633 0.5184 0.8873 31 1 -0.3633 0.5092 -0.8927 32 1 2.0345 2.1271 -0.0005 33 1 5.4950 1.0363 -0.8940 34 1 5.4942 1.0454 0.8859 35 1 6.4136 3.3037 -0.9060 36 1 6.4136 3.3129 0.8740 37 1 7.3037 5.6912 -0.0286 38 1 5.3829 7.5639 0.8538 39 1 5.3812 7.5555 -0.9262 40 1 6.0853 9.9346 -0.6943 41 1 6.4036 9.8877 1.0590 42 1 9.7472 13.6258 -1.2333 43 1 8.3309 10.5514 -2.2076 44 1 9.7945 10.8194 -1.2267 45 1 9.8127 8.4892 -0.5112 46 1 9.6718 8.5149 -2.2862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568220378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:06 Heat of formation + Delta-G solvation = -34.252587 kcal Electronic energy + Delta-G solvation = -28389.996225 eV Core-core repulsion = 24091.601136 eV Total energy + Delta-G solvation = -4298.395089 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.24345 -39.92260 -38.65007 -37.93278 -34.96495 -34.55867 -34.33080 -33.67639 -31.71155 -30.87534 -29.28953 -28.12739 -27.65327 -26.78371 -25.07281 -23.26120 -23.19276 -21.89831 -20.97820 -20.49199 -19.62914 -18.03898 -17.80474 -17.34279 -16.97305 -16.79332 -16.70265 -16.01286 -15.56969 -15.21929 -14.96343 -14.80612 -14.42124 -14.31487 -13.97154 -13.87317 -13.67436 -13.49385 -13.25751 -13.20872 -13.00721 -12.75461 -12.73737 -12.24556 -12.20385 -11.61426 -11.50951 -11.17023 -10.90636 -10.77620 -10.70761 -10.46493 -10.29843 -10.04243 -10.00983 -9.92395 -9.69919 -9.60842 -9.13295 -9.06594 -8.59393 -6.81327 -5.89207 -3.33281 1.12857 1.89511 2.42147 2.53866 2.79181 3.30966 3.37769 3.39420 3.42478 4.04189 4.16396 4.31129 4.38669 4.55221 4.68210 4.75773 4.77960 4.83374 4.93123 4.98631 4.99458 5.05879 5.07515 5.28152 5.35231 5.42168 5.45762 5.48301 5.73701 5.79192 5.79949 5.96823 6.08906 6.22193 6.31012 6.40107 6.42854 6.55090 6.69933 7.04639 7.44226 7.46785 7.65939 7.78913 7.90876 8.15498 8.28179 9.06245 9.68803 10.25354 11.18873 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034121 B = 0.001576 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.404562 B =17762.662942 C =18045.662847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.205 4.205 4 C 0.018 3.982 5 C 0.143 3.857 6 O -0.356 6.356 7 C 0.046 3.954 8 C 0.513 3.487 9 O -0.524 6.524 10 N -0.718 5.718 11 C 0.132 3.868 12 C 0.065 3.935 13 H 0.059 0.941 14 C 0.121 3.879 15 N -0.594 5.594 16 C -0.257 4.257 17 H 0.070 0.930 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.906 3.094 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.278 1.278 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 N -0.363 5.363 28 O 0.100 5.900 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.178 0.822 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.404 0.596 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.030 0.970 41 H 0.064 0.936 42 H 0.255 0.745 43 H 0.028 0.972 44 H 0.095 0.905 45 H 0.041 0.959 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 -24.823 1.400 26.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.227 4.227 4 C -0.140 4.140 5 C 0.066 3.934 6 O -0.273 6.273 7 C -0.034 4.034 8 C 0.297 3.703 9 O -0.399 6.399 10 N -0.371 5.371 11 C 0.009 3.991 12 C 0.005 3.995 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.736 3.264 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.204 1.204 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.310 6.310 27 N -0.068 5.068 28 O 0.033 5.967 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.196 0.804 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.238 0.762 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.047 0.953 44 H 0.113 0.887 45 H 0.059 0.941 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.665 -25.477 1.190 27.274 hybrid contribution 1.112 1.465 0.693 1.966 sum -8.552 -24.012 1.883 25.559 Atomic orbital electron populations 1.20349 0.83785 1.04577 1.04379 1.24568 0.96495 0.85918 1.03221 1.22453 0.90638 1.01559 1.08008 1.23107 0.97144 0.90124 1.03644 1.20316 0.90472 0.80499 1.02133 1.87948 1.29178 1.14606 1.95593 1.22236 0.88503 0.89539 1.03102 1.20069 0.86277 0.86795 0.77165 1.90733 1.17781 1.83222 1.48167 1.45820 1.09683 1.06390 1.75238 1.21441 0.96433 0.78162 1.03084 1.22811 0.92142 0.96862 0.87689 0.92291 1.21444 0.90646 0.88525 0.99978 1.44068 1.22829 1.37592 1.27249 1.19214 1.31192 0.97979 0.90218 0.91274 1.25054 1.01975 0.96626 0.95948 1.70037 1.42362 1.29152 1.13095 0.86229 0.79766 0.79683 0.80723 1.21374 1.21645 1.20359 1.21449 0.97635 0.90273 0.89334 1.23329 0.84984 0.95311 1.00182 1.87786 1.36379 1.68812 1.37978 1.73776 0.97422 1.15270 1.20331 1.84806 1.11032 1.33223 1.67686 0.89931 0.89024 0.89019 0.80414 0.90583 0.90616 0.89725 0.89849 0.76213 0.89984 0.90519 0.95174 0.91724 0.93459 0.95342 0.88742 0.94084 0.90015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.45 36.01 0.38 0.08 16 2 C -0.04 -0.32 7.49 -35.30 -0.26 -0.58 16 3 C -0.21 -2.04 10.45 -39.38 -0.41 -2.45 16 4 C 0.02 0.19 7.28 -82.10 -0.60 -0.41 16 5 C 0.14 1.26 6.56 36.01 0.24 1.49 16 6 O -0.36 -3.90 9.37 -55.14 -0.52 -4.42 16 7 C 0.05 0.41 6.42 36.01 0.23 0.64 16 8 C 0.51 6.53 7.91 -10.98 -0.09 6.44 16 9 O -0.52 -8.98 16.50 -14.35 -0.24 -9.22 16 10 N -0.72 -8.54 5.50 -60.29 -0.33 -8.88 16 11 C 0.13 1.88 5.35 -4.04 -0.02 1.86 16 12 C 0.06 1.07 2.81 -26.58 -0.07 0.99 16 13 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 14 C 0.12 2.44 6.02 -3.53 -0.02 2.42 16 15 N -0.59 -14.45 3.05 -171.83 -0.52 -14.97 16 16 C -0.26 -6.83 9.65 -15.06 -0.15 -6.98 16 17 H 0.07 1.79 7.88 -52.49 -0.41 1.38 16 18 C 0.00 0.08 4.95 -17.43 -0.09 -0.01 16 19 N -0.90 -25.54 11.14 55.49 0.62 -24.92 16 20 Si 0.91 21.08 29.59 -169.99 -5.03 16.05 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.14 3.21 5.45 -3.53 -0.02 3.19 16 25 C 0.04 0.73 6.99 37.31 0.26 0.99 16 26 O -0.39 -6.93 10.33 -35.23 -0.36 -7.29 16 27 N -0.36 -4.11 12.07 33.42 0.40 -3.70 16 28 O 0.10 1.01 11.20 17.19 0.19 1.20 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.18 1.75 8.05 -52.49 -0.42 1.33 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.40 3.89 8.47 -40.82 -0.35 3.55 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 2.40 6.14 -51.93 -0.32 2.08 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 388.63 15.07 5.86 5.86 Total: -1.00 -34.22 388.63 -7.52 -41.75 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.97 Total: 0.87 kcal Atomic # 6 Polarization: 8.31 SS G_CDS: -0.62 Total: 7.68 kcal Atomic # 7 Polarization: -52.64 SS G_CDS: 0.17 Total: -52.48 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.92 Total: -19.73 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -34.22 -7.52 -41.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568220378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.496 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds