Wall clock time and date at job start Sat Apr 11 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.35451 * 126.77234 * 2 1 4 4 C 1.41383 * 103.98182 * 180.09535 * 3 2 1 5 5 C 1.50703 * 126.79961 * 179.88860 * 4 3 2 6 6 O 1.42891 * 109.47290 * 359.71211 * 5 4 3 7 7 C 1.42901 * 113.99893 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46869 * 180.02562 * 7 6 5 9 9 O 1.21276 * 120.00493 * 359.97438 * 8 7 6 10 10 N 1.34785 * 119.99770 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99737 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46770 * 180.02562 * 11 10 8 13 13 H 1.09000 * 109.51307 * 304.88962 * 12 11 10 14 14 C 1.53297 * 109.51021 * 184.74348 * 12 11 10 15 15 N 1.47151 * 108.38330 * 187.77121 * 14 12 11 16 16 C 1.36940 * 120.98208 * 230.51089 * 15 14 12 17 17 H 1.08002 * 119.99791 * 26.25375 * 16 15 14 18 18 C 1.38806 * 120.00328 * 206.24736 * 16 15 14 19 19 N 1.31628 * 119.99850 * 16.92785 * 18 16 15 20 20 Si 1.86803 * 120.00368 * 196.92617 * 18 16 15 21 21 H 1.48496 * 109.47175 * 90.00153 * 20 18 16 22 22 H 1.48502 * 109.47315 * 210.00245 * 20 18 16 23 23 H 1.48494 * 109.47146 * 330.00274 * 20 18 16 24 24 C 1.47146 * 118.03751 * 50.53854 * 15 14 12 25 25 C 1.53301 * 108.38364 * 309.46424 * 24 15 14 26 26 O 1.42960 * 109.51411 * 64.99825 * 12 11 10 27 27 N 1.30174 * 106.39781 * 359.63244 * 4 3 2 28 28 O 1.20926 * 111.60131 * 0.23613 * 27 4 3 29 29 H 1.08994 * 109.46659 * 180.29631 * 1 2 3 30 30 H 1.08997 * 109.46815 * 300.29691 * 1 2 3 31 31 H 1.08998 * 109.46778 * 60.29899 * 1 2 3 32 32 H 1.07994 * 128.00988 * 359.96879 * 3 2 1 33 33 H 1.09003 * 109.46951 * 239.70900 * 5 4 3 34 34 H 1.09000 * 109.47141 * 119.71873 * 5 4 3 35 35 H 1.08999 * 109.47338 * 60.00584 * 7 6 5 36 36 H 1.09004 * 109.47187 * 299.99949 * 7 6 5 37 37 H 0.96991 * 119.99964 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47442 * 59.99711 * 11 10 8 39 39 H 1.09004 * 109.46904 * 299.99673 * 11 10 8 40 40 H 1.08999 * 109.68180 * 307.49620 * 14 12 11 41 41 H 1.09006 * 109.68374 * 68.05114 * 14 12 11 42 42 H 0.96998 * 119.99748 * 180.02562 * 19 18 16 43 43 H 1.08992 * 109.68419 * 69.18648 * 24 15 14 44 44 H 1.08997 * 109.68532 * 189.70681 * 24 15 14 45 45 H 1.09000 * 109.50840 * 292.37683 * 25 24 15 46 46 H 1.08993 * 109.51579 * 172.22660 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3180 1.0850 0.0000 4 6 3.6214 0.5373 -0.0023 5 6 4.9211 1.3002 -0.0056 6 8 4.6500 2.7031 -0.0129 7 6 5.8215 3.5214 -0.0172 8 6 5.4196 4.9738 -0.0241 9 8 4.2456 5.2782 -0.0258 10 7 6.3649 5.9346 -0.0295 11 6 5.9742 7.3465 -0.0357 12 6 7.2284 8.2227 -0.0417 13 1 7.8647 7.9534 0.8015 14 6 6.8237 9.6969 0.0714 15 7 8.0248 10.5242 -0.1245 16 6 8.3517 11.5138 0.7639 17 1 8.0247 11.4469 1.7910 18 6 9.1035 12.6026 0.3443 19 7 9.2215 12.8651 -0.9401 20 14 9.9476 13.6954 1.6024 21 1 11.3112 13.1745 1.8750 22 1 10.0431 15.0790 1.0716 23 1 9.1594 13.7015 2.8609 24 6 8.8638 10.2573 -1.3035 25 6 9.1691 8.7557 -1.3496 26 8 7.9443 8.0234 -1.2630 27 7 3.4765 -0.7563 0.0046 28 8 2.3096 -1.0735 0.0060 29 1 -0.3632 -1.0276 0.0053 30 1 -0.3633 0.5184 0.8873 31 1 -0.3633 0.5092 -0.8927 32 1 2.0345 2.1271 -0.0005 33 1 5.4950 1.0363 -0.8940 34 1 5.4942 1.0454 0.8859 35 1 6.4136 3.3037 -0.9060 36 1 6.4136 3.3129 0.8740 37 1 7.3037 5.6912 -0.0286 38 1 5.3829 7.5639 0.8538 39 1 5.3812 7.5555 -0.9262 40 1 6.0853 9.9346 -0.6943 41 1 6.4036 9.8877 1.0590 42 1 9.7472 13.6258 -1.2333 43 1 8.3309 10.5514 -2.2076 44 1 9.7945 10.8194 -1.2267 45 1 9.8127 8.4892 -0.5112 46 1 9.6718 8.5149 -2.2862 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568220378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:05 Heat of formation + Delta-G solvation = -58.613761 kcal Electronic energy + Delta-G solvation = -28391.052605 eV Core-core repulsion = 24091.601136 eV Total energy + Delta-G solvation = -4299.451469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.96595 -40.95859 -40.03710 -38.79385 -36.50281 -35.76526 -35.26899 -34.27522 -33.39263 -32.48002 -30.23261 -29.09844 -28.61244 -27.85991 -26.45636 -24.94662 -23.96346 -23.35161 -21.95170 -21.44893 -21.01279 -18.91705 -18.77034 -18.54044 -18.12037 -17.74626 -17.56919 -17.21918 -16.91162 -16.58256 -16.10813 -15.96384 -15.72300 -15.48855 -15.26861 -14.99943 -14.69281 -14.55103 -14.43414 -14.08111 -14.07368 -13.93136 -13.33732 -13.24462 -13.21942 -13.00656 -12.87954 -12.69185 -12.52819 -12.17383 -12.15809 -12.07477 -11.87371 -11.41549 -11.34271 -10.93463 -10.79099 -10.66575 -10.54271 -10.26989 -10.13740 -8.76244 -7.91745 -5.39343 0.44735 1.17230 1.47203 1.47949 1.56944 1.57594 1.63174 2.17427 2.46006 2.61675 2.78475 3.23279 3.39971 3.49227 3.65239 3.75455 3.98978 4.05981 4.08155 4.16987 4.22267 4.26414 4.28854 4.36366 4.42512 4.47985 4.49004 4.53336 4.62635 4.72163 4.72757 4.77873 4.88841 4.90735 4.98805 5.06579 5.24129 5.24663 5.35326 5.55556 5.61366 5.88208 6.25387 6.32935 6.54393 7.05779 7.20052 7.21705 7.73885 8.27139 9.14137 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034121 B = 0.001576 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.404562 B =17762.662942 C =18045.662847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.024 4.024 3 C -0.234 4.234 4 C 0.006 3.994 5 C 0.143 3.857 6 O -0.385 6.385 7 C 0.050 3.950 8 C 0.510 3.490 9 O -0.575 6.575 10 N -0.707 5.707 11 C 0.142 3.858 12 C 0.080 3.920 13 H 0.074 0.926 14 C 0.115 3.885 15 N -0.612 5.612 16 C -0.267 4.267 17 H 0.074 0.926 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.972 3.028 21 H -0.282 1.282 22 H -0.297 1.297 23 H -0.268 1.268 24 C 0.141 3.859 25 C 0.055 3.945 26 O -0.389 6.389 27 N -0.386 5.386 28 O 0.089 5.911 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.173 0.827 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.418 0.582 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.016 0.984 41 H 0.072 0.928 42 H 0.251 0.749 43 H -0.003 1.003 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 -26.808 2.456 28.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.087 4.087 3 C -0.255 4.255 4 C -0.152 4.152 5 C 0.067 3.933 6 O -0.303 6.303 7 C -0.029 4.029 8 C 0.297 3.703 9 O -0.454 6.454 10 N -0.361 5.361 11 C 0.018 3.982 12 C 0.021 3.979 13 H 0.091 0.909 14 C -0.011 4.011 15 N -0.337 5.337 16 C -0.396 4.396 17 H 0.091 0.909 18 C -0.245 4.245 19 N -0.582 5.582 20 Si 0.800 3.200 21 H -0.208 1.208 22 H -0.224 1.224 23 H -0.193 1.193 24 C 0.016 3.984 25 C -0.023 4.023 26 O -0.308 6.308 27 N -0.094 5.094 28 O 0.025 5.975 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.191 0.809 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.255 0.745 38 H 0.106 0.894 39 H 0.078 0.922 40 H 0.034 0.966 41 H 0.091 0.909 42 H 0.060 0.940 43 H 0.015 0.985 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.196 -27.513 2.257 29.096 hybrid contribution 0.862 2.096 0.348 2.293 sum -8.334 -25.417 2.606 26.875 Atomic orbital electron populations 1.20590 0.80815 1.06104 1.05585 1.25236 0.97957 0.84912 1.00606 1.22540 0.91103 1.01814 1.10058 1.23551 0.98331 0.90241 1.03056 1.20471 0.89817 0.79264 1.03795 1.87905 1.30693 1.15750 1.95940 1.22349 0.88173 0.86256 1.06140 1.20815 0.85440 0.88476 0.75608 1.90715 1.19958 1.84195 1.50552 1.45660 1.10529 1.05230 1.74696 1.21161 0.94965 0.79424 1.02653 1.22639 0.92970 0.94570 0.87754 0.90851 1.21619 0.89166 0.90444 0.99919 1.44344 1.24395 1.37852 1.27087 1.19573 1.30747 0.98431 0.90870 0.90878 1.25828 1.02944 0.98187 0.97582 1.70197 1.43362 1.29730 1.14909 0.85203 0.78793 0.77347 0.78704 1.20832 1.22368 1.19298 1.21330 0.95786 0.93510 0.87799 1.23151 0.85423 0.91509 1.02190 1.87802 1.36248 1.68103 1.38674 1.73756 0.98094 1.15644 1.21874 1.84769 1.11047 1.33843 1.67882 0.88269 0.87659 0.87713 0.80945 0.88894 0.88733 0.86766 0.86384 0.74497 0.89431 0.92174 0.96610 0.90940 0.93957 0.98469 0.91449 0.92837 0.87321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.45 71.24 0.74 0.28 16 2 C -0.02 -0.37 7.49 25.04 0.19 -0.18 16 3 C -0.23 -4.61 10.45 22.40 0.23 -4.37 16 4 C 0.01 0.13 7.28 43.58 0.32 0.44 16 5 C 0.14 2.25 6.56 71.24 0.47 2.72 16 6 O -0.38 -7.80 9.37 -129.94 -1.22 -9.02 16 7 C 0.05 0.72 6.42 71.24 0.46 1.18 16 8 C 0.51 12.06 7.91 87.66 0.69 12.75 16 9 O -0.58 -19.55 16.50 16.02 0.26 -19.28 16 10 N -0.71 -15.12 5.50 -463.05 -2.55 -17.67 16 11 C 0.14 3.86 5.35 86.38 0.46 4.32 16 12 C 0.08 2.50 2.81 30.69 0.09 2.59 16 13 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 14 C 0.11 4.60 6.02 86.35 0.52 5.12 16 15 N -0.61 -29.97 3.05 -697.55 -2.13 -32.10 16 16 C -0.27 -14.21 9.65 84.03 0.81 -13.40 16 17 H 0.07 3.75 7.88 -2.91 -0.02 3.73 16 18 C -0.05 -2.71 4.95 84.86 0.42 -2.29 16 19 N -0.94 -54.32 11.14 21.65 0.24 -54.08 16 20 Si 0.97 43.52 29.59 68.60 2.03 45.55 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 24 C 0.14 6.63 5.45 86.36 0.47 7.10 16 25 C 0.05 1.92 6.99 72.08 0.50 2.42 16 26 O -0.39 -13.01 10.33 -148.98 -1.54 -14.55 16 27 N -0.39 -8.57 12.07 -49.55 -0.60 -9.17 16 28 O 0.09 1.76 11.20 71.68 0.80 2.56 16 29 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.17 3.50 8.05 -2.91 -0.02 3.48 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.42 6.59 8.47 -92.72 -0.79 5.80 16 38 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 2.74 7.96 -2.38 -0.02 2.72 16 42 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 43 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.07 3.51 6.14 -2.39 -0.01 3.50 16 45 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.11 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -76.64 388.63 1.89 -74.75 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.21 Total: 14.33 kcal Atomic # 6 Polarization: 12.30 SS G_CDS: 6.37 Total: 18.67 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -5.03 Total: -113.01 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.69 Total: -40.29 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -76.64 1.89 -74.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568220378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.138 kcal (2) G-P(sol) polarization free energy of solvation -76.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds