Wall clock time and date at job start Sat Apr 11 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35443 * 126.77964 * 2 1 4 4 C 1.41377 * 103.98946 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.80529 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47108 * 359.97438 * 5 4 3 7 7 C 1.42895 * 114.00096 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47383 * 179.97438 * 7 6 5 9 9 O 1.21285 * 119.99941 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00205 * 179.97438 * 8 7 6 11 11 C 1.46508 * 120.00144 * 180.02562 * 10 8 7 12 12 C 1.52999 * 109.47238 * 180.02562 * 11 10 8 13 13 H 1.09004 * 109.51069 * 60.09974 * 12 11 10 14 14 C 1.53713 * 109.44399 * 180.38835 * 12 11 10 15 15 N 1.47152 * 108.16109 * 172.37575 * 14 12 11 16 16 C 1.36940 * 120.97913 * 129.43766 * 15 14 12 17 17 H 1.07994 * 119.99761 * 333.35023 * 16 15 14 18 18 C 1.38809 * 119.99789 * 153.63435 * 16 15 14 19 19 N 1.31621 * 119.99752 * 342.80642 * 18 16 15 20 20 Si 1.86798 * 120.00151 * 162.81292 * 18 16 15 21 21 H 1.48497 * 109.47563 * 89.99168 * 20 18 16 22 22 H 1.48497 * 109.47083 * 209.99762 * 20 18 16 23 23 H 1.48499 * 109.46914 * 329.99368 * 20 18 16 24 24 C 1.47146 * 118.03553 * 309.15809 * 15 14 12 25 25 C 1.53297 * 108.38564 * 50.78948 * 24 15 14 26 26 O 1.42958 * 109.51342 * 300.00132 * 12 11 10 27 27 N 1.30178 * 106.39505 * 0.26307 * 4 3 2 28 28 O 1.20925 * 111.59989 * 359.53095 * 27 4 3 29 29 H 1.08999 * 109.47209 * 89.99824 * 1 2 3 30 30 H 1.08997 * 109.47269 * 210.00380 * 1 2 3 31 31 H 1.09002 * 109.46823 * 329.99582 * 1 2 3 32 32 H 1.08002 * 128.00527 * 0.06221 * 3 2 1 33 33 H 1.09003 * 109.47128 * 239.99973 * 5 4 3 34 34 H 1.08994 * 109.47521 * 120.00091 * 5 4 3 35 35 H 1.09006 * 109.47492 * 59.99546 * 7 6 5 36 36 H 1.08999 * 109.47139 * 299.99907 * 7 6 5 37 37 H 0.97003 * 120.00417 * 0.02562 * 10 8 7 38 38 H 1.08995 * 109.46888 * 60.00449 * 11 10 8 39 39 H 1.08999 * 109.47086 * 300.00601 * 11 10 8 40 40 H 1.08999 * 109.83498 * 52.69108 * 14 12 11 41 41 H 1.09000 * 109.74633 * 292.00280 * 14 12 11 42 42 H 0.97005 * 119.99504 * 180.02562 * 19 18 16 43 43 H 1.09001 * 109.68466 * 170.51164 * 24 15 14 44 44 H 1.09008 * 109.68641 * 291.02624 * 24 15 14 45 45 H 1.08992 * 109.51600 * 67.61914 * 25 24 15 46 46 H 1.09004 * 109.51328 * 187.77859 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3180 1.0848 0.0000 4 6 3.6214 0.5372 -0.0006 5 6 4.9211 1.2999 -0.0003 6 8 4.6500 2.7029 0.0001 7 6 5.8215 3.5212 -0.0002 8 6 5.4198 4.9737 -0.0004 9 8 4.2458 5.2781 0.0002 10 7 6.3650 5.9343 -0.0002 11 6 5.9745 7.3463 0.0002 12 6 7.2288 8.2225 -0.0002 13 1 7.8201 8.0112 -0.8912 14 6 6.8183 9.7037 0.0100 15 7 8.0321 10.5148 0.1949 16 6 8.3142 11.5621 -0.6411 17 1 7.9361 11.5624 -1.6527 18 6 9.0909 12.6204 -0.1900 19 7 9.2741 12.7987 1.1012 20 14 9.8759 13.7916 -1.4153 21 1 8.9460 14.9160 -1.6910 22 1 11.1421 14.3234 -0.8503 23 1 10.1638 13.0662 -2.6787 24 6 8.9306 10.1711 1.3084 25 6 9.2355 8.6704 1.2381 26 8 8.0066 7.9434 1.1663 27 7 3.4764 -0.7565 -0.0066 28 8 2.3095 -1.0737 -0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 2.0345 2.1270 0.0009 33 1 5.4943 1.0412 -0.8906 34 1 5.4947 1.0400 0.8893 35 1 6.4134 3.3082 -0.8905 36 1 6.4140 3.3079 0.8895 37 1 7.3040 5.6909 -0.0003 38 1 5.3825 7.5593 0.8903 39 1 5.3823 7.5598 -0.8896 40 1 6.1242 9.8895 0.8297 41 1 6.3454 9.9614 -0.9376 42 1 9.8166 13.5386 1.4164 43 1 9.8572 10.7384 1.2210 44 1 8.4459 10.4038 2.2566 45 1 9.8343 8.4616 0.3517 46 1 9.7855 8.3685 2.1295 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568220379.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:10 Heat of formation + Delta-G solvation = -34.162285 kcal Electronic energy + Delta-G solvation = -28399.876138 eV Core-core repulsion = 24101.484965 eV Total energy + Delta-G solvation = -4298.391173 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.24191 -39.91455 -38.63963 -37.92477 -34.95900 -34.55875 -34.31913 -33.67565 -31.69972 -30.87214 -29.28154 -28.12471 -27.65486 -26.77906 -25.06928 -23.26066 -23.18954 -21.89055 -20.96144 -20.47451 -19.64605 -18.03892 -17.80465 -17.34160 -16.96657 -16.79501 -16.69642 -16.00961 -15.55141 -15.21891 -14.96089 -14.79678 -14.42530 -14.31485 -13.96370 -13.87802 -13.66766 -13.50771 -13.24692 -13.20832 -13.00333 -12.75478 -12.73516 -12.23899 -12.20034 -11.60370 -11.50116 -11.17413 -10.89585 -10.75680 -10.70400 -10.46490 -10.33673 -10.03854 -10.00819 -9.92464 -9.69261 -9.61124 -9.13867 -9.05109 -8.58952 -6.80805 -5.89432 -3.33114 1.12947 1.89803 2.42631 2.54579 2.79072 3.30714 3.37847 3.39456 3.42966 4.04109 4.16381 4.31863 4.38883 4.56201 4.67756 4.76346 4.78530 4.83724 4.93626 4.97839 4.99806 5.07235 5.08445 5.28220 5.35922 5.41654 5.45672 5.48146 5.73035 5.79444 5.79785 5.97368 6.09162 6.22665 6.31036 6.40407 6.43073 6.55474 6.70011 7.04404 7.45233 7.46930 7.65895 7.78462 7.90941 8.16448 8.28215 9.06149 9.68934 10.25558 11.18663 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034907 B = 0.001577 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.942077 B =17745.925062 C =18072.424128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C -0.205 4.205 4 C 0.018 3.982 5 C 0.143 3.857 6 O -0.356 6.356 7 C 0.046 3.954 8 C 0.512 3.488 9 O -0.524 6.524 10 N -0.717 5.717 11 C 0.133 3.867 12 C 0.065 3.935 13 H 0.060 0.940 14 C 0.121 3.879 15 N -0.594 5.594 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.003 3.997 19 N -0.902 5.902 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.139 3.861 25 C 0.040 3.960 26 O -0.390 6.390 27 N -0.362 5.362 28 O 0.100 5.900 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.178 0.822 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.404 0.596 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.031 0.969 41 H 0.064 0.936 42 H 0.255 0.745 43 H 0.094 0.906 44 H 0.028 0.972 45 H 0.041 0.959 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.515 -24.710 -1.902 26.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.102 4.102 3 C -0.226 4.226 4 C -0.140 4.140 5 C 0.066 3.934 6 O -0.273 6.273 7 C -0.034 4.034 8 C 0.297 3.703 9 O -0.400 6.400 10 N -0.370 5.370 11 C 0.009 3.991 12 C 0.005 3.995 13 H 0.077 0.923 14 C -0.006 4.006 15 N -0.317 5.317 16 C -0.386 4.386 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.546 5.546 20 Si 0.734 3.266 21 H -0.213 1.213 22 H -0.215 1.215 23 H -0.204 1.204 24 C 0.013 3.987 25 C -0.038 4.038 26 O -0.310 6.310 27 N -0.068 5.068 28 O 0.032 5.968 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.196 0.804 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.239 0.761 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.112 0.888 44 H 0.046 0.954 45 H 0.059 0.941 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.658 -25.386 -1.694 27.214 hybrid contribution 1.057 1.529 -0.663 1.974 sum -8.601 -23.857 -2.357 25.469 Atomic orbital electron populations 1.20345 0.83785 1.04746 1.04196 1.24564 0.96495 0.85919 1.03241 1.22465 0.90639 1.01534 1.07965 1.23105 0.97151 0.90135 1.03646 1.20315 0.90467 0.80503 1.02135 1.87947 1.29189 1.14599 1.95596 1.22233 0.88493 0.89544 1.03103 1.20068 0.86278 0.86802 0.77175 1.90734 1.17786 1.83229 1.48229 1.45794 1.09731 1.06347 1.75160 1.21453 0.96399 0.78223 1.03030 1.22904 0.91347 0.96537 0.88749 0.92251 1.21529 0.90485 0.88599 0.99977 1.44079 1.19965 1.33699 1.33988 1.19182 1.30334 0.96637 0.92466 0.91338 1.25048 1.01968 0.96874 0.95699 1.70037 1.41488 1.31247 1.11860 0.86260 0.78879 0.80839 0.80576 1.21256 1.21459 1.20447 1.21447 0.96884 0.90032 0.90325 1.23326 0.84869 0.95411 1.00163 1.87772 1.34016 1.66240 1.42956 1.73780 0.97418 1.15272 1.20301 1.84801 1.11030 1.33212 1.67730 0.89350 0.89854 0.88815 0.80419 0.90626 0.90570 0.89863 0.89722 0.76130 0.90585 0.90048 0.95154 0.91718 0.93462 0.88764 0.95355 0.94066 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.45 36.01 0.38 0.08 16 2 C -0.04 -0.32 7.49 -35.31 -0.26 -0.59 16 3 C -0.20 -2.04 10.45 -39.39 -0.41 -2.45 16 4 C 0.02 0.19 7.28 -82.10 -0.60 -0.41 16 5 C 0.14 1.26 6.56 36.00 0.24 1.50 16 6 O -0.36 -3.92 9.37 -55.14 -0.52 -4.44 16 7 C 0.05 0.41 6.42 36.00 0.23 0.64 16 8 C 0.51 6.56 7.91 -10.99 -0.09 6.47 16 9 O -0.52 -9.01 16.50 -14.36 -0.24 -9.25 16 10 N -0.72 -8.59 5.45 -60.29 -0.33 -8.92 16 11 C 0.13 1.89 5.37 -4.04 -0.02 1.87 16 12 C 0.06 1.06 2.88 -26.36 -0.08 0.99 16 13 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 14 C 0.12 2.45 6.05 -3.32 -0.02 2.43 16 15 N -0.59 -14.45 3.04 -171.57 -0.52 -14.97 16 16 C -0.26 -6.84 9.65 -15.06 -0.15 -6.99 16 17 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 18 C 0.00 0.08 4.94 -17.43 -0.09 -0.01 16 19 N -0.90 -25.53 11.15 55.49 0.62 -24.91 16 20 Si 0.91 21.04 29.59 -169.99 -5.03 16.01 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.14 3.21 5.44 -3.54 -0.02 3.19 16 25 C 0.04 0.73 6.99 37.31 0.26 0.99 16 26 O -0.39 -6.88 10.13 -35.23 -0.36 -7.24 16 27 N -0.36 -4.11 12.07 33.42 0.40 -3.71 16 28 O 0.10 1.01 11.20 17.17 0.19 1.20 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.18 1.75 8.05 -52.49 -0.42 1.33 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.40 3.97 8.35 -40.82 -0.34 3.63 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 1.24 7.96 -51.93 -0.41 0.82 16 42 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.09 2.39 6.14 -51.93 -0.32 2.07 16 44 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 45 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 388.36 15.07 5.85 5.85 Total: -1.00 -34.18 388.36 -7.51 -41.69 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -6.96 Total: 0.96 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -0.62 Total: 7.71 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.17 Total: -52.50 kcal Atomic # 8 Polarization: -18.80 SS G_CDS: -0.92 Total: -19.72 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.18 -7.51 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568220379.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.525 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds