Wall clock time and date at job start Sat Apr 11 2020 05:41:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 119.99847 * 2 1 4 4 H 1.48500 * 109.46975 * 274.97763 * 3 2 1 5 5 H 1.48499 * 109.47152 * 34.98306 * 3 2 1 6 6 H 1.48509 * 109.46798 * 154.98224 * 3 2 1 7 7 C 1.38814 * 119.99825 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99781 * 161.09612 * 7 2 1 9 9 N 1.36934 * 119.99695 * 341.08772 * 7 2 1 10 10 C 1.46930 * 120.62856 * 150.90946 * 9 7 2 11 11 C 1.53189 * 108.78082 * 126.41077 * 10 9 7 12 12 C 1.53046 * 109.31079 * 54.63537 * 11 10 9 13 13 C 1.53001 * 109.45982 * 178.63007 * 12 11 10 14 14 O 1.42901 * 109.46823 * 181.82375 * 13 12 11 15 15 N 1.46497 * 109.46013 * 58.65639 * 12 11 10 16 16 C 1.34771 * 120.00058 * 61.68005 * 15 12 11 17 17 O 1.21280 * 120.00116 * 355.10829 * 16 15 12 18 18 C 1.50704 * 120.00032 * 175.11536 * 16 15 12 19 19 C 1.53239 * 109.62140 * 179.97438 * 18 16 15 20 20 C 1.50591 * 109.16303 * 175.33386 * 19 18 16 21 21 O 1.21230 * 119.35929 * 150.90546 * 20 19 18 22 22 N 1.34139 * 121.27654 * 330.89092 * 20 19 18 23 23 C 1.34135 * 122.59105 * 0.55656 * 22 20 19 24 24 O 1.21235 * 119.36048 * 179.45662 * 23 22 20 25 25 C 1.50592 * 121.28075 * 359.48452 * 23 22 20 26 26 C 1.53040 * 109.52554 * 298.64270 * 12 11 10 27 27 C 1.46919 * 120.63460 * 330.92665 * 9 7 2 28 28 H 0.97003 * 120.00069 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.58514 * 6.61804 * 10 9 7 30 30 H 1.09006 * 109.70445 * 246.27259 * 10 9 7 31 31 H 1.09001 * 109.49704 * 294.68727 * 11 10 9 32 32 H 1.08996 * 109.50014 * 174.58301 * 11 10 9 33 33 H 1.09003 * 109.46786 * 301.82663 * 13 12 11 34 34 H 1.09002 * 109.46705 * 61.82163 * 13 12 11 35 35 H 0.96700 * 113.99344 * 179.97438 * 14 13 12 36 36 H 0.97005 * 119.99716 * 241.67923 * 15 12 11 37 37 H 1.09004 * 109.76901 * 59.53292 * 18 16 15 38 38 H 1.09004 * 109.52237 * 55.43476 * 19 18 16 39 39 H 1.08999 * 109.52865 * 295.24361 * 19 18 16 40 40 H 0.97006 * 118.70071 * 180.54272 * 22 20 19 41 41 H 1.09004 * 109.52159 * 148.97520 * 25 23 22 42 42 H 1.08992 * 109.52180 * 269.16328 * 25 23 22 43 43 H 1.08997 * 109.49834 * 181.31027 * 26 12 11 44 44 H 1.09004 * 109.49937 * 301.41020 * 26 12 11 45 45 H 1.09004 * 109.58887 * 353.37379 * 27 9 7 46 46 H 1.08999 * 109.58712 * 113.80150 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3924 2.1071 -1.3948 5 1 1.5042 2.6200 0.8027 6 1 3.5964 1.4120 0.5921 7 6 2.0102 -1.2022 -0.0005 8 1 3.0464 -1.2273 -0.3036 9 7 1.3809 -2.3562 0.3833 10 6 1.7952 -3.6537 -0.1677 11 6 2.0953 -4.6088 0.9919 12 6 0.8786 -4.6787 1.9177 13 6 1.1619 -5.6580 3.0586 14 8 0.0105 -5.7557 3.8994 15 7 -0.2868 -5.1382 1.1582 16 6 -0.2792 -6.3575 0.5842 17 8 0.7237 -7.0385 0.6205 18 6 -1.5167 -6.8748 -0.1028 19 6 -1.2453 -8.2731 -0.6679 20 6 -2.5188 -8.8267 -1.2504 21 8 -2.4587 -9.6122 -2.1718 22 7 -3.7184 -8.4676 -0.7694 23 6 -3.8606 -7.5961 0.2403 24 8 -4.9738 -7.3055 0.6224 25 6 -2.6642 -6.9710 0.9080 26 6 0.5953 -3.2904 2.4959 27 6 0.2783 -2.3205 1.3537 28 1 -0.4850 0.8401 0.0004 29 1 2.6910 -3.5235 -0.7750 30 1 0.9941 -4.0649 -0.7819 31 1 2.9569 -4.2433 1.5505 32 1 2.3106 -5.6022 0.5985 33 1 1.3946 -6.6395 2.6455 34 1 2.0093 -5.2996 3.6430 35 1 0.1187 -6.3612 4.6455 36 1 -1.0641 -4.5647 1.0684 37 1 -1.7977 -6.2013 -0.9126 38 1 -0.8957 -8.9272 0.1310 39 1 -0.4856 -8.2101 -1.4470 40 1 -4.5145 -8.8533 -1.1675 41 1 -2.9240 -5.9728 1.2606 42 1 -2.3547 -7.5874 1.7519 43 1 -0.2569 -3.3453 3.1732 44 1 1.4712 -2.9374 3.0404 45 1 0.1731 -1.3106 1.7503 46 1 -0.6483 -2.6217 0.8651 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570497551.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:28 Heat of formation + Delta-G solvation = -162.712673 kcal Electronic energy + Delta-G solvation = -31432.363288 eV Core-core repulsion = 27128.397751 eV Total energy + Delta-G solvation = -4303.965537 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.66265 -41.41612 -39.96383 -39.11008 -37.36282 -36.52533 -35.56962 -34.89733 -33.55770 -31.88305 -31.53264 -29.82694 -28.32756 -26.20850 -25.57208 -24.25645 -23.93557 -22.63604 -21.63647 -20.35017 -20.14971 -18.96732 -18.73434 -18.44900 -18.13412 -17.93629 -16.98372 -16.77731 -16.51736 -16.34289 -15.84480 -15.69815 -15.51797 -15.42568 -15.36397 -15.09422 -14.87492 -14.56819 -14.43471 -14.15701 -13.80010 -13.43451 -13.19418 -13.15373 -12.99887 -12.58024 -12.54470 -12.46579 -12.27630 -12.25339 -11.99181 -11.90172 -11.76598 -11.40608 -11.38213 -11.36432 -11.23067 -10.92820 -10.51397 -10.31454 -9.86089 -8.61961 -7.86481 -5.29505 0.39274 1.46934 1.50225 1.58859 1.60095 1.70216 1.73144 2.22341 2.53251 2.90108 3.28246 3.32991 3.37564 3.45382 3.60104 3.75179 3.90850 3.97115 4.07571 4.18177 4.35546 4.41347 4.51475 4.56981 4.64308 4.70925 4.76844 4.78360 4.81551 4.89242 4.96995 4.99610 5.08791 5.19104 5.26777 5.34338 5.49546 5.67724 5.69595 5.74280 5.77322 6.26781 6.41910 6.67882 6.73994 7.00005 7.18781 7.30612 7.89638 8.40997 9.19290 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014244 B = 0.003282 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.287388 B = 8528.132591 C = 9005.547324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.041 4.041 3 Si 0.957 3.043 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.265 4.265 8 H 0.060 0.940 9 N -0.605 5.605 10 C 0.153 3.847 11 C -0.132 4.132 12 C 0.195 3.805 13 C 0.076 3.924 14 O -0.574 6.574 15 N -0.696 5.696 16 C 0.531 3.469 17 O -0.558 6.558 18 C -0.105 4.105 19 C -0.114 4.114 20 C 0.540 3.460 21 O -0.535 6.535 22 N -0.670 5.670 23 C 0.541 3.459 24 O -0.532 6.532 25 C -0.124 4.124 26 C -0.125 4.125 27 C 0.180 3.820 28 H 0.250 0.750 29 H 0.043 0.957 30 H 0.014 0.986 31 H 0.063 0.937 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.054 0.946 35 H 0.392 0.608 36 H 0.405 0.595 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.120 0.880 40 H 0.416 0.584 41 H 0.128 0.872 42 H 0.138 0.862 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.047 0.953 46 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 -16.738 6.243 18.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.237 4.237 3 Si 0.786 3.214 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.396 4.396 8 H 0.077 0.923 9 N -0.329 5.329 10 C 0.027 3.973 11 C -0.172 4.172 12 C 0.109 3.891 13 C -0.003 4.003 14 O -0.381 6.381 15 N -0.347 5.347 16 C 0.318 3.682 17 O -0.437 6.437 18 C -0.127 4.127 19 C -0.153 4.153 20 C 0.331 3.669 21 O -0.409 6.409 22 N -0.335 5.335 23 C 0.331 3.669 24 O -0.406 6.406 25 C -0.164 4.164 26 C -0.164 4.164 27 C 0.055 3.945 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.241 0.759 36 H 0.241 0.759 37 H 0.139 0.861 38 H 0.153 0.847 39 H 0.138 0.862 40 H 0.256 0.744 41 H 0.146 0.854 42 H 0.156 0.844 43 H 0.097 0.903 44 H 0.081 0.919 45 H 0.066 0.934 46 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -3.180 -16.806 5.674 18.021 hybrid contribution -0.193 1.008 -0.186 1.043 sum -3.373 -15.798 5.488 17.061 Atomic orbital electron populations 1.70155 1.06389 1.25792 1.54898 1.25651 0.95896 1.01028 1.01128 0.85425 0.78406 0.80331 0.77241 1.21611 1.21814 1.19705 1.19416 0.93313 0.86499 1.40350 0.92268 1.44255 1.39640 1.01829 1.47181 1.20845 0.96897 0.85719 0.93796 1.22228 0.96859 1.00345 0.97739 1.20181 0.85818 0.93246 0.89878 1.22436 0.87998 0.99008 0.90825 1.86422 1.38559 1.69735 1.43422 1.45943 1.19109 1.16971 1.52643 1.20170 0.89041 0.81086 0.77934 1.90640 1.34593 1.58210 1.60277 1.21426 0.93524 0.98312 0.99425 1.21728 0.93507 0.95632 1.04468 1.21102 0.85629 0.79210 0.80994 1.90800 1.87564 1.34179 1.28388 1.44844 1.11487 1.42689 1.34439 1.21026 0.91491 0.76593 0.77792 1.90818 1.28109 1.59822 1.61893 1.21930 0.89776 1.05701 0.98993 1.22184 1.02134 0.93642 0.98471 1.20540 0.88602 0.97247 0.88137 0.94126 0.93861 0.96823 0.91876 0.89776 0.91920 0.92776 0.75872 0.75870 0.86147 0.84717 0.86173 0.74437 0.85365 0.84393 0.90341 0.91933 0.93422 0.97130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.09 11.40 21.65 0.25 -51.84 16 2 C -0.04 -2.18 4.85 84.86 0.41 -1.77 16 3 Si 0.96 43.50 29.59 68.60 2.03 45.53 16 4 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.27 -14.04 9.56 84.03 0.80 -13.23 16 8 H 0.06 3.12 7.90 -2.92 -0.02 3.10 16 9 N -0.61 -28.18 2.98 -699.15 -2.09 -30.26 16 10 C 0.15 6.00 6.26 86.36 0.54 6.54 16 11 C -0.13 -4.16 4.69 30.67 0.14 -4.02 16 12 C 0.19 5.38 0.44 3.63 0.00 5.39 16 13 C 0.08 1.71 5.67 71.98 0.41 2.12 16 14 O -0.57 -11.10 12.86 -148.98 -1.92 -13.02 16 15 N -0.70 -16.77 3.85 -422.80 -1.63 -18.40 16 16 C 0.53 11.31 6.56 87.66 0.58 11.89 16 17 O -0.56 -14.23 12.21 -3.03 -0.04 -14.27 16 18 C -0.11 -1.56 2.66 -11.39 -0.03 -1.59 16 19 C -0.11 -1.64 4.70 29.89 0.14 -1.50 16 20 C 0.54 9.27 7.74 87.72 0.68 9.95 16 21 O -0.53 -13.09 17.88 -2.87 -0.05 -13.14 16 22 N -0.67 -10.20 5.09 -428.62 -2.18 -12.39 16 23 C 0.54 8.93 7.74 87.72 0.68 9.61 16 24 O -0.53 -12.72 17.88 -2.89 -0.05 -12.77 16 25 C -0.12 -1.57 5.27 29.89 0.16 -1.41 16 26 C -0.12 -4.06 4.85 30.66 0.15 -3.91 16 27 C 0.18 7.70 5.03 86.36 0.43 8.13 16 28 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 29 H 0.04 1.74 7.93 -2.39 -0.02 1.73 16 30 H 0.01 0.55 7.74 -2.38 -0.02 0.53 16 31 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 2.58 6.17 -2.39 -0.01 2.56 16 33 H 0.06 1.45 6.27 -2.39 -0.01 1.44 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.39 4.12 9.12 -74.06 -0.68 3.44 16 36 H 0.41 9.63 6.99 -92.70 -0.65 8.99 16 37 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 38 H 0.14 1.65 7.98 -2.39 -0.02 1.63 16 39 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.42 5.88 8.79 -92.70 -0.81 5.07 16 41 H 0.13 1.61 7.92 -2.38 -0.02 1.59 16 42 H 0.14 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 2.35 7.69 -2.39 -0.02 2.33 16 44 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 45 H 0.05 2.39 6.20 -2.39 -0.01 2.38 16 46 H 0.01 0.46 6.90 -2.39 -0.02 0.45 16 Total: -1.00 -70.68 365.86 -1.67 -72.35 By element: Atomic # 1 Polarization: 23.12 SS G_CDS: -1.08 Total: 22.04 kcal Atomic # 6 Polarization: 21.08 SS G_CDS: 5.09 Total: 26.17 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -5.65 Total: -112.89 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -2.06 Total: -53.19 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.68 -1.67 -72.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570497551.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.366 kcal (2) G-P(sol) polarization free energy of solvation -70.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds