Wall clock time and date at job start Sat Apr 11 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47085 * 2 1 4 4 C 1.50701 * 109.47437 * 240.00006 * 2 1 3 5 5 H 1.07997 * 120.00224 * 240.00609 * 4 2 1 6 6 C 1.37885 * 119.99946 * 59.99714 * 4 2 1 7 7 N 1.31510 * 119.99602 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99837 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47313 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47092 * 120.00086 * 8 6 4 11 11 H 1.48499 * 109.46782 * 239.99860 * 8 6 4 12 12 C 1.52999 * 109.47401 * 119.99970 * 2 1 3 13 13 N 1.46903 * 109.47048 * 300.00179 * 12 2 1 14 14 C 1.38476 * 111.00282 * 177.71458 * 13 12 2 15 15 C 1.41428 * 121.39918 * 277.01184 * 14 13 12 16 16 C 1.40016 * 122.06699 * 0.04106 * 15 14 13 17 17 C 1.36317 * 119.49583 * 179.72849 * 16 15 14 18 18 C 1.39304 * 120.84283 * 0.24623 * 17 16 15 19 19 C 1.36199 * 121.12089 * 0.02938 * 18 17 16 20 20 C 1.40399 * 119.66578 * 359.97280 * 19 18 17 21 21 N 1.33800 * 121.60212 * 180.02562 * 20 19 18 22 22 N 1.28391 * 121.91320 * 179.07499 * 21 20 19 23 23 C 1.33124 * 123.23770 * 1.01340 * 22 21 20 24 24 C 1.48292 * 119.90662 * 179.34775 * 23 22 21 25 25 N 1.34106 * 126.68165 * 183.77434 * 24 23 22 26 26 N 1.28981 * 107.26533 * 180.02562 * 25 24 23 27 27 N 1.28731 * 108.95546 * 0.02562 * 26 25 24 28 28 H 0.97009 * 125.32780 * 179.97438 * 27 26 25 29 29 N 1.28870 * 109.33793 * 359.72417 * 27 26 25 30 30 H 1.08992 * 109.47124 * 300.00109 * 1 2 3 31 31 H 1.08997 * 109.46963 * 60.00083 * 1 2 3 32 32 H 1.09007 * 109.47035 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.47511 * 180.02562 * 3 2 1 34 34 H 1.09007 * 109.47139 * 299.99764 * 3 2 1 35 35 H 1.09000 * 109.47134 * 59.99662 * 3 2 1 36 36 H 0.97000 * 119.99738 * 180.02562 * 7 6 4 37 37 H 1.08997 * 109.47289 * 179.97438 * 12 2 1 38 38 H 1.09007 * 109.47104 * 59.99947 * 12 2 1 39 39 H 1.00904 * 110.99469 * 53.76179 * 13 12 2 40 40 H 1.08000 * 120.25404 * 359.97438 * 16 15 14 41 41 H 1.08002 * 119.58541 * 180.23371 * 17 16 15 42 42 H 1.07998 * 119.44154 * 180.02562 * 18 17 16 43 43 H 1.07997 * 120.16536 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 3.1466 -2.2869 -3.6038 10 1 1.1662 -1.5867 -4.8161 11 1 3.1466 -0.1873 -4.8165 12 6 2.0401 -0.7212 1.2492 13 7 1.5504 -0.0287 2.4487 14 6 1.9518 -0.6857 3.5997 15 6 1.2345 -1.7959 4.1027 16 6 0.0875 -2.2890 3.4688 17 6 -0.5603 -3.3661 3.9964 18 6 -0.0986 -3.9779 5.1596 19 6 1.0105 -3.5194 5.8035 20 6 1.7042 -2.4121 5.2900 21 7 2.7982 -1.9299 5.8907 22 7 3.4472 -0.9286 5.4168 23 6 3.0829 -0.2791 4.3133 24 6 3.8797 0.8783 3.8395 25 7 3.5996 1.6693 2.7934 26 7 4.5368 2.5523 2.7194 27 7 5.3822 2.3454 3.6679 28 1 6.1803 2.8716 3.8327 29 7 4.9994 1.3329 4.3673 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 0.7089 1.1613 -3.4844 37 1 3.1300 -0.7216 1.2490 38 1 1.6767 -1.7490 1.2492 39 1 0.5469 0.0742 2.4224 40 1 -0.2788 -1.8220 2.5665 41 1 -1.4430 -3.7500 3.5065 42 1 -0.6292 -4.8302 5.5577 43 1 1.3546 -4.0053 6.7046 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589267330.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:50 Heat of formation + Delta-G solvation = 216.923785 kcal Electronic energy + Delta-G solvation = -29722.890282 eV Core-core repulsion = 25807.281439 eV Total energy + Delta-G solvation = -3915.608842 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.14757 -41.43297 -37.93838 -37.66667 -35.05216 -33.97424 -33.33439 -31.90494 -31.42987 -30.59905 -29.53926 -25.68967 -25.53913 -25.33231 -25.11660 -24.08626 -23.84211 -22.52083 -21.55135 -19.41512 -18.66185 -18.61436 -18.00403 -16.91389 -16.79905 -15.97711 -15.63890 -15.38397 -15.05476 -14.63433 -14.50745 -14.34601 -13.71926 -13.67113 -13.15398 -12.77545 -12.57499 -12.43555 -12.19010 -12.09501 -11.86670 -11.38804 -11.16565 -11.14324 -11.10288 -10.93563 -10.82648 -10.68368 -10.61066 -10.27641 -10.10763 -10.04176 -9.84312 -9.41949 -9.34446 -9.22008 -8.70214 -8.60749 -8.30560 -7.93962 -5.95645 -4.06271 -0.10512 0.35750 1.37177 1.62749 2.22675 2.42620 2.98508 3.27440 3.36390 3.39480 3.45793 3.80744 3.89072 4.15601 4.27785 4.42382 4.46492 4.61355 4.73281 4.91560 5.01556 5.24009 5.30392 5.39069 5.57780 5.66026 5.71642 5.83278 5.93160 6.04127 6.08656 6.14737 6.22056 6.53274 6.54761 6.59462 6.74919 6.94825 7.08665 7.22180 7.46720 7.54318 7.66288 7.72807 7.81896 8.16443 8.32190 8.47379 8.49855 8.62315 8.94092 9.58885 11.04633 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.009442 B = 0.004729 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2964.718689 B = 5919.895848 C = 8168.759767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.072 3.928 3 C -0.111 4.111 4 C -0.507 4.507 5 H 0.051 0.949 6 C 0.069 3.931 7 N -0.881 5.881 8 Si 0.887 3.113 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.090 3.910 13 N -0.621 5.621 14 C 0.199 3.801 15 C -0.114 4.114 16 C -0.087 4.087 17 C -0.104 4.104 18 C -0.089 4.089 19 C -0.088 4.088 20 C 0.083 3.917 21 N -0.224 5.224 22 N -0.175 5.175 23 C 0.106 3.894 24 C 0.226 3.774 25 N -0.194 5.194 26 N -0.058 5.058 27 N -0.239 5.239 28 H 0.471 0.529 29 N -0.275 5.275 30 H 0.010 0.990 31 H 0.088 0.912 32 H 0.020 0.980 33 H 0.021 0.979 34 H 0.070 0.930 35 H 0.028 0.972 36 H 0.258 0.742 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.359 0.641 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 -3.573 14.859 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.071 3.929 3 C -0.169 4.169 4 C -0.546 4.546 5 H 0.069 0.931 6 C -0.133 4.133 7 N -0.519 5.519 8 Si 0.715 3.285 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.034 4.034 13 N -0.251 5.251 14 C 0.085 3.915 15 C -0.125 4.125 16 C -0.106 4.106 17 C -0.124 4.124 18 C -0.110 4.110 19 C -0.109 4.109 20 C -0.045 4.045 21 N -0.079 5.079 22 N -0.030 5.030 23 C -0.032 4.032 24 C -0.056 4.056 25 N -0.067 5.067 26 N -0.053 5.053 27 N -0.084 5.084 28 H 0.325 0.675 29 N -0.128 5.128 30 H 0.029 0.971 31 H 0.107 0.893 32 H 0.039 0.961 33 H 0.040 0.960 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.044 0.956 39 H 0.185 0.815 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.234 -2.566 15.435 15.696 hybrid contribution -0.745 -1.152 -1.677 2.166 sum 0.489 -3.718 13.759 14.261 Atomic orbital electron populations 1.21900 0.98497 0.98379 1.00599 1.18142 0.91995 0.93820 0.88919 1.21565 0.98202 0.97006 1.00156 1.21046 1.31409 1.11880 0.90278 0.93071 1.24834 0.94982 0.94867 0.98585 1.69838 1.36640 1.22539 1.22885 0.86621 0.78632 0.79738 0.83475 1.20031 1.21127 1.21068 1.22392 0.99732 0.94093 0.87197 1.57690 1.19196 1.48515 0.99658 1.19914 0.91380 0.87760 0.92466 1.19555 0.99049 0.96290 0.97582 1.21001 0.93294 0.96746 0.99585 1.21047 1.00069 0.95504 0.95796 1.21052 0.95678 0.99383 0.94854 1.20743 0.95014 0.94462 1.00696 1.20352 0.94684 0.96772 0.92657 1.73810 1.04565 1.05601 1.23970 1.72966 1.21539 1.00906 1.07608 1.19074 0.94724 0.94849 0.94510 1.22520 0.91801 0.97939 0.93326 1.76666 1.15312 1.00420 1.14346 1.79127 0.97174 1.19329 1.09709 1.47836 1.21886 1.20674 1.17959 0.67524 1.75038 1.14612 1.02575 1.20568 0.97142 0.89348 0.96085 0.95993 0.91172 0.95304 0.93175 0.91948 0.95576 0.81525 0.84260 0.84726 0.84719 0.83980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 7.93 37.16 0.29 -2.63 16 2 C 0.07 1.63 0.57 -155.66 -0.09 1.54 16 3 C -0.11 -2.62 7.88 37.16 0.29 -2.33 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.38 16 5 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 6 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 7 N -0.88 -23.53 9.35 55.43 0.52 -23.01 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 C 0.09 1.78 4.35 -3.82 -0.02 1.76 16 13 N -0.62 -10.65 3.74 -57.74 -0.22 -10.87 16 14 C 0.20 3.27 5.32 -83.07 -0.44 2.83 16 15 C -0.11 -1.66 5.74 -106.67 -0.61 -2.27 16 16 C -0.09 -1.08 8.85 -39.61 -0.35 -1.43 16 17 C -0.10 -1.02 9.96 -39.88 -0.40 -1.41 16 18 C -0.09 -0.78 9.94 -39.92 -0.40 -1.18 16 19 C -0.09 -0.94 10.00 -39.50 -0.39 -1.34 16 20 C 0.08 1.18 6.68 -84.85 -0.57 0.61 16 21 N -0.22 -3.58 11.53 32.21 0.37 -3.21 16 22 N -0.18 -3.01 11.41 33.42 0.38 -2.63 16 23 C 0.11 1.84 6.85 -82.59 -0.57 1.27 16 24 C 0.23 3.92 8.00 -156.28 -1.25 2.67 16 25 N -0.19 -3.50 10.67 32.13 0.34 -3.16 16 26 N -0.06 -0.91 13.47 60.35 0.81 -0.10 16 27 N -0.24 -2.94 7.90 60.35 0.48 -2.46 16 28 H 0.47 3.25 8.96 -340.35 -3.05 0.20 16 29 N -0.27 -4.18 12.39 32.15 0.40 -3.78 16 30 H 0.01 0.19 6.52 -51.93 -0.34 -0.15 16 31 H 0.09 2.17 6.07 -51.93 -0.32 1.85 16 32 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 1.83 6.07 -51.93 -0.32 1.52 16 35 H 0.03 0.63 7.48 -51.93 -0.39 0.24 16 36 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 37 H 0.06 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.03 0.51 7.51 -51.92 -0.39 0.12 16 39 H 0.36 5.75 5.50 -39.29 -0.22 5.54 16 40 H 0.14 1.72 6.89 -52.49 -0.36 1.36 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -30.79 356.20 -8.88 -39.67 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.45 Total: 2.10 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -4.86 Total: -13.58 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 3.09 Total: -49.22 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.79 -8.88 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589267330.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 256.596 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 225.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 216.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds