Wall clock time and date at job start Sat Apr 11 2020 05:41:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47036 * 2 1 4 4 C 1.50709 * 109.46947 * 239.99921 * 2 1 3 5 5 H 1.07999 * 119.99855 * 241.34306 * 4 2 1 6 6 C 1.37869 * 119.99837 * 61.35041 * 4 2 1 7 7 N 1.31513 * 120.00067 * 193.97559 * 6 4 2 8 8 Si 1.86804 * 120.00442 * 13.97070 * 6 4 2 9 9 H 1.48505 * 109.46611 * 84.54784 * 8 6 4 10 10 H 1.48493 * 109.47495 * 204.55207 * 8 6 4 11 11 H 1.48500 * 109.46843 * 324.55564 * 8 6 4 12 12 C 1.53001 * 109.47206 * 120.00112 * 2 1 3 13 13 N 1.46501 * 109.46930 * 300.00099 * 12 2 1 14 14 C 1.34780 * 119.99769 * 180.02562 * 13 12 2 15 15 O 1.21582 * 120.00168 * 359.97438 * 14 13 12 16 16 N 1.34772 * 119.99854 * 179.97438 * 14 13 12 17 17 C 1.46498 * 120.00261 * 180.02562 * 16 14 13 18 18 C 1.52996 * 109.47064 * 59.99953 * 17 16 14 19 19 C 1.53002 * 109.46820 * 300.00049 * 17 16 14 20 20 C 1.50693 * 109.47511 * 180.02562 * 17 16 14 21 21 N 1.30002 * 127.34039 * 0.02562 * 20 17 16 22 22 O 1.20649 * 112.32579 * 179.97438 * 21 20 17 23 23 C 1.33469 * 113.17565 * 0.02562 * 22 21 20 24 24 C 1.37437 * 106.32697 * 359.97438 * 23 22 21 25 25 C 1.47258 * 128.57526 * 180.02562 * 24 23 22 26 26 O 1.21525 * 120.00020 * 179.97438 * 25 24 23 27 27 O 1.34766 * 119.99483 * 359.97438 * 25 24 23 28 28 H 1.08995 * 109.47052 * 309.36958 * 1 2 3 29 29 H 1.08999 * 109.47029 * 69.36606 * 1 2 3 30 30 H 1.09003 * 109.46840 * 189.36856 * 1 2 3 31 31 H 1.09004 * 109.46692 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.47075 * 299.99295 * 3 2 1 33 33 H 1.08989 * 109.47354 * 60.00303 * 3 2 1 34 34 H 0.97003 * 120.00387 * 179.97438 * 7 6 4 35 35 H 1.09004 * 109.47090 * 179.97438 * 12 2 1 36 36 H 1.09000 * 109.47313 * 59.99966 * 12 2 1 37 37 H 0.97001 * 119.99912 * 359.97438 * 13 12 2 38 38 H 0.97001 * 119.99827 * 0.02562 * 16 14 13 39 39 H 1.09000 * 109.47311 * 180.02562 * 18 17 16 40 40 H 1.09006 * 109.47048 * 300.00249 * 18 17 16 41 41 H 1.08996 * 109.47145 * 60.00042 * 18 17 16 42 42 H 1.09000 * 109.47298 * 299.99610 * 19 17 16 43 43 H 1.08998 * 109.47187 * 60.00117 * 19 17 16 44 44 H 1.09000 * 109.47060 * 179.97438 * 19 17 16 45 45 H 1.08003 * 126.83404 * 179.97438 * 23 22 21 46 46 H 0.96704 * 116.99119 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6352 -1.6011 -1.1316 6 6 1.7224 -0.2234 -2.4825 7 7 1.9158 -0.9726 -3.5460 8 14 1.0275 1.5006 -2.6685 9 1 2.1417 2.4816 -2.7084 10 1 0.2470 1.5865 -3.9287 11 1 0.1418 1.8042 -1.5159 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5768 -1.4794 3.7811 16 7 1.4289 0.1447 4.7699 17 6 1.7837 -0.3551 6.1005 18 6 3.3052 -0.3423 6.2611 19 6 1.2657 -1.7856 6.2627 20 6 1.1598 0.5267 7.1513 21 7 0.4162 1.5758 6.9602 22 8 0.0595 2.0797 7.9968 23 6 0.5145 1.4395 9.0759 24 6 1.2623 0.3837 8.6122 25 6 1.9869 -0.6383 9.3860 26 8 2.6050 -1.5118 8.8100 27 8 1.9646 -0.6048 10.7331 28 1 -0.3633 0.6518 0.7944 29 1 -0.3633 0.3621 -0.9617 30 1 -0.3633 -1.0140 0.1673 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8899 34 1 1.6973 -0.6300 -4.4269 35 1 3.1301 -0.7217 1.2490 36 1 1.6767 -1.7489 1.2492 37 1 0.9943 0.7582 2.3564 38 1 0.8709 0.9332 4.6809 39 1 3.5692 -0.7146 7.2509 40 1 3.7561 -0.9805 5.5010 41 1 3.6742 0.6767 6.1454 42 1 0.1817 -1.7946 6.1484 43 1 1.7166 -2.4237 5.5028 44 1 1.5301 -2.1576 7.2526 45 1 0.3314 1.6993 10.1081 46 1 2.4555 -1.2966 11.1975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590615022.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:53 Heat of formation + Delta-G solvation = -60.619097 kcal Electronic energy + Delta-G solvation = -30382.849733 eV Core-core repulsion = 26083.311306 eV Total energy + Delta-G solvation = -4299.538427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.18581 -41.49821 -40.99293 -38.98006 -37.68915 -36.92758 -35.05380 -34.42505 -33.55501 -33.14382 -31.90852 -28.36114 -28.04038 -27.52377 -26.98370 -26.69861 -24.69103 -22.77606 -22.18526 -21.13317 -20.73895 -19.89853 -19.09740 -18.89486 -18.75737 -18.05274 -17.82245 -17.10679 -16.74534 -16.73894 -16.47446 -15.98116 -15.56510 -15.19605 -15.15053 -14.83931 -14.73119 -14.59988 -14.33890 -14.12644 -13.98612 -13.76245 -13.32103 -13.31333 -12.96911 -12.95497 -12.60826 -12.44609 -12.38879 -12.25788 -12.13132 -11.96078 -11.76954 -11.66118 -11.37221 -11.10315 -10.99582 -10.93794 -10.61796 -10.40755 -10.33576 -9.79480 -8.30059 -6.31616 -0.13117 0.51384 1.36654 1.37265 1.50432 1.54439 1.67173 1.78232 2.15587 2.23005 2.34587 2.71064 3.04235 3.07076 3.36385 3.67039 3.83079 3.98522 4.06797 4.16125 4.33906 4.40572 4.51509 4.62899 4.64019 4.72182 4.73608 4.74529 4.79633 4.83559 4.85365 4.94179 5.05643 5.12638 5.19963 5.25287 5.41976 5.44040 5.56354 5.66101 5.73169 5.79047 5.96861 6.31328 6.72391 6.93153 7.02973 7.12047 7.32945 7.59303 8.87144 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.002461 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.249810 B =11374.552349 C =12082.587279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.029 3.971 3 C -0.146 4.146 4 C -0.517 4.517 5 H 0.028 0.972 6 C 0.017 3.983 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.282 1.282 10 H -0.315 1.315 11 H -0.205 1.205 12 C 0.179 3.821 13 N -0.727 5.727 14 C 0.704 3.296 15 O -0.620 6.620 16 N -0.734 5.734 17 C 0.279 3.721 18 C -0.159 4.159 19 C -0.159 4.159 20 C 0.056 3.944 21 N -0.363 5.363 22 O 0.111 5.889 23 C 0.074 3.926 24 C -0.265 4.265 25 C 0.567 3.433 26 O -0.523 6.523 27 O -0.495 6.495 28 H 0.063 0.937 29 H 0.046 0.954 30 H 0.040 0.960 31 H 0.046 0.954 32 H 0.036 0.964 33 H 0.071 0.929 34 H 0.265 0.735 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.406 0.594 38 H 0.408 0.592 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.291 0.709 46 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.937 9.743 35.102 36.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.027 3.973 3 C -0.203 4.203 4 C -0.555 4.555 5 H 0.047 0.953 6 C -0.181 4.181 7 N -0.585 5.585 8 Si 0.775 3.225 9 H -0.209 1.209 10 H -0.244 1.244 11 H -0.129 1.129 12 C 0.054 3.946 13 N -0.383 5.383 14 C 0.404 3.596 15 O -0.500 6.500 16 N -0.391 5.391 17 C 0.191 3.809 18 C -0.217 4.217 19 C -0.217 4.217 20 C -0.107 4.107 21 N -0.068 5.068 22 O 0.051 5.949 23 C -0.007 4.007 24 C -0.272 4.272 25 C 0.412 3.588 26 O -0.414 6.414 27 O -0.310 6.310 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.242 0.758 38 H 0.244 0.756 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.306 0.694 46 H 0.304 0.696 Dipole moment (debyes) X Y Z Total from point charges -5.829 9.542 33.598 35.410 hybrid contribution 0.435 -0.242 -0.431 0.659 sum -5.394 9.300 33.166 34.866 Atomic orbital electron populations 1.22209 0.96131 1.00567 1.00799 1.18655 0.93741 0.93088 0.91786 1.22282 1.00993 0.96854 1.00145 1.21009 1.32897 1.11087 0.90484 0.95325 1.25853 0.95405 1.01617 0.95199 1.70112 1.50720 1.38283 0.99401 0.86320 0.79393 0.79922 0.76904 1.20903 1.24416 1.12928 1.20891 0.97100 0.94566 0.82035 1.45160 1.56065 1.33311 1.03722 1.15978 0.80123 0.82631 0.80843 1.90842 1.44071 1.28925 1.86207 1.45063 1.56985 1.33420 1.03671 1.18208 0.94501 0.91276 0.76882 1.22277 0.92805 1.02006 1.04619 1.22279 1.00311 0.94522 1.04611 1.24623 0.97825 0.94776 0.93464 1.73632 1.15368 1.10773 1.07051 1.84602 1.55286 1.44966 1.10018 1.27616 0.88952 0.87986 0.96161 1.21100 1.11819 1.03163 0.91089 1.19074 0.76789 0.81734 0.81242 1.90886 1.42015 1.37080 1.71429 1.84448 1.71230 1.57502 1.17786 0.91837 0.93528 0.94097 0.93467 0.94621 0.91054 0.92656 0.94056 0.94261 0.75759 0.75601 0.88961 0.91744 0.92886 0.92919 0.91755 0.88959 0.69386 0.69637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.49 7.53 71.98 0.54 -4.95 16 2 C 0.03 1.25 0.50 -52.92 -0.03 1.22 16 3 C -0.15 -5.65 7.52 71.98 0.54 -5.11 16 4 C -0.52 -29.10 8.62 25.60 0.22 -28.88 16 5 H 0.03 1.83 7.99 -2.91 -0.02 1.80 16 6 C 0.02 0.96 5.32 84.65 0.45 1.41 16 7 N -0.95 -59.50 13.96 21.44 0.30 -59.20 16 8 Si 0.95 43.50 22.79 68.60 1.56 45.07 16 9 H -0.28 -12.71 7.10 99.48 0.71 -12.00 16 10 H -0.31 -14.88 7.11 99.48 0.71 -14.18 16 11 H -0.21 -8.03 4.65 99.48 0.46 -7.56 16 12 C 0.18 7.47 4.49 86.38 0.39 7.86 16 13 N -0.73 -24.30 5.01 -478.53 -2.40 -26.70 16 14 C 0.70 24.45 7.98 179.05 1.43 25.88 16 15 O -0.62 -26.19 12.55 -3.97 -0.05 -26.24 16 16 N -0.73 -20.15 5.10 -441.47 -2.25 -22.40 16 17 C 0.28 7.22 0.78 2.85 0.00 7.22 16 18 C -0.16 -4.38 8.24 71.98 0.59 -3.78 16 19 C -0.16 -4.40 8.24 71.98 0.59 -3.81 16 20 C 0.06 1.11 5.92 45.17 0.27 1.38 16 21 N -0.36 -6.51 11.05 -44.74 -0.49 -7.00 16 22 O 0.11 1.22 11.06 77.21 0.85 2.07 16 23 C 0.07 0.35 12.24 67.63 0.83 1.18 16 24 C -0.27 -3.47 6.33 -18.76 -0.12 -3.59 16 25 C 0.57 7.32 8.17 70.19 0.57 7.90 16 26 O -0.52 -10.55 11.84 19.75 0.23 -10.32 16 27 O -0.49 -2.08 13.34 -56.77 -0.76 -2.84 16 28 H 0.06 1.96 7.13 -2.39 -0.02 1.94 16 29 H 0.05 1.91 4.30 -2.39 -0.01 1.90 16 30 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 31 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.43 2.25 -2.39 -0.01 1.42 16 33 H 0.07 2.16 6.86 -2.39 -0.02 2.15 16 34 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 35 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.41 11.14 6.27 -92.71 -0.58 10.56 16 38 H 0.41 9.52 7.76 -92.71 -0.72 8.80 16 39 H 0.09 2.38 5.08 -2.39 -0.01 2.37 16 40 H 0.06 2.19 6.16 -2.38 -0.01 2.18 16 41 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 2.19 6.16 -2.39 -0.01 2.18 16 44 H 0.09 2.39 5.09 -2.39 -0.01 2.38 16 45 H 0.29 -2.10 8.06 -2.91 -0.02 -2.13 16 46 H 0.44 -1.53 9.11 -74.05 -0.67 -2.20 16 Total: -1.00 -81.45 356.80 2.15 -79.30 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: -1.14 Total: 24.32 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 6.28 Total: 3.94 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -4.84 Total: -115.30 kcal Atomic # 8 Polarization: -37.61 SS G_CDS: 0.28 Total: -37.33 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.56 Total: 45.07 kcal Total: -81.45 2.15 -79.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615022.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.683 kcal (2) G-P(sol) polarization free energy of solvation -81.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds