Wall clock time and date at job start Sat Apr 11 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30841 * 125.90171 * 2 1 4 4 N 1.40080 * 108.20885 * 180.02562 * 3 2 1 5 5 C 1.46498 * 126.03779 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47186 * 90.02525 * 5 4 3 7 7 H 1.08002 * 119.99724 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00148 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99966 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 120.00019 * 180.02562 * 8 6 5 11 11 H 1.48509 * 109.47113 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.47240 * 119.99549 * 10 8 6 13 13 H 1.48493 * 109.47206 * 239.99880 * 10 8 6 14 14 C 1.34951 * 107.92655 * 359.76050 * 4 3 2 15 15 C 1.50691 * 126.12920 * 180.23912 * 14 4 3 16 16 C 1.35320 * 107.74087 * 0.38413 * 14 4 3 17 17 C 1.50697 * 126.03559 * 179.86911 * 16 14 4 18 18 C 1.52996 * 109.47491 * 269.71891 * 17 16 14 19 19 C 1.50702 * 109.47159 * 179.97438 * 18 17 16 20 20 O 1.21283 * 120.00262 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99928 * 179.72352 * 19 18 17 22 22 C 1.46499 * 120.00199 * 180.27479 * 21 19 18 23 23 H 1.09001 * 109.46948 * 35.00281 * 22 21 19 24 24 C 1.52997 * 109.47288 * 275.00460 * 22 21 19 25 25 O 1.42896 * 109.47270 * 294.99447 * 24 22 21 26 26 C 1.50700 * 109.47343 * 155.00212 * 22 21 19 27 27 O 1.20830 * 119.99818 * 0.02562 * 26 22 21 28 28 O 1.34230 * 119.99936 * 180.02562 * 26 22 21 29 29 H 1.09008 * 109.46859 * 269.97319 * 1 2 3 30 30 H 1.08996 * 109.47281 * 29.97137 * 1 2 3 31 31 H 1.08993 * 109.47447 * 149.97430 * 1 2 3 32 32 H 1.08998 * 109.47342 * 210.02575 * 5 4 3 33 33 H 1.08995 * 109.47362 * 330.02800 * 5 4 3 34 34 H 0.96998 * 119.99767 * 180.02562 * 9 8 6 35 35 H 1.09001 * 109.47196 * 270.17568 * 15 14 4 36 36 H 1.09005 * 109.47565 * 30.17689 * 15 14 4 37 37 H 1.09005 * 109.47499 * 150.17275 * 15 14 4 38 38 H 1.09004 * 109.46801 * 149.71930 * 17 16 14 39 39 H 1.09000 * 109.47461 * 29.72462 * 17 16 14 40 40 H 1.09004 * 109.47066 * 60.00201 * 18 17 16 41 41 H 1.08994 * 109.47405 * 300.00031 * 18 17 16 42 42 H 0.97000 * 120.00317 * 0.28382 * 21 19 18 43 43 H 1.09004 * 109.47058 * 55.00196 * 24 22 21 44 44 H 1.09010 * 109.47187 * 174.99641 * 24 22 21 45 45 H 0.96700 * 114.00442 * 179.97438 * 25 24 22 46 46 H 0.96704 * 116.99478 * 179.97438 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7898 1.5008 -0.0003 6 6 5.1956 1.7965 1.4207 7 1 4.6303 1.3801 2.2414 8 6 6.2883 2.5986 1.6730 9 7 6.9762 3.1060 0.6735 10 14 6.7916 2.9645 3.4342 11 1 5.8618 2.2788 4.3674 12 1 8.1744 2.4752 3.6658 13 1 6.7389 4.4297 3.6699 14 6 3.6142 -0.7154 0.0044 15 6 4.8349 -1.5989 0.0108 16 6 2.3271 -1.1330 -0.0006 17 6 1.8599 -2.5657 -0.0004 18 6 1.7013 -3.0507 -1.4428 19 6 1.2348 -4.4836 -1.4426 20 8 1.0470 -5.0601 -0.3922 21 7 1.0202 -5.1226 -2.6097 22 6 0.5609 -6.5138 -2.6095 23 1 -0.1105 -6.6746 -1.7660 24 6 1.7658 -7.4487 -2.4877 25 8 2.5865 -7.3220 -3.6506 26 6 -0.1703 -6.8015 -3.8954 27 8 -0.2946 -5.9337 -4.7270 28 8 -0.6836 -8.0219 -4.1170 29 1 -0.3633 -0.0005 1.0278 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 5.6090 0.9988 -0.5150 33 1 4.5561 2.4338 -0.5129 34 1 7.7452 3.6700 0.8510 35 1 5.1338 -1.8131 -1.0153 36 1 5.6489 -1.0903 0.5276 37 1 4.6053 -2.5323 0.5248 38 1 0.9012 -2.6352 0.5137 39 1 2.5935 -3.1871 0.5133 40 1 2.6600 -2.9812 -1.9570 41 1 0.9677 -2.4294 -1.9565 42 1 1.1701 -4.6616 -3.4498 43 1 2.3446 -7.1821 -1.6034 44 1 1.4191 -8.4784 -2.3982 45 1 3.3712 -7.8871 -3.6417 46 1 -1.1443 -8.1586 -4.9562 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600783096.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:17 Heat of formation + Delta-G solvation = -150.548277 kcal Electronic energy + Delta-G solvation = -29176.443746 eV Core-core repulsion = 24873.005697 eV Total energy + Delta-G solvation = -4303.438049 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14961 -41.73542 -40.46895 -37.96186 -37.25277 -36.10638 -35.47133 -34.84399 -34.17288 -32.04294 -30.88135 -30.35847 -27.99862 -27.60789 -25.77386 -25.22538 -23.91591 -22.22467 -21.33358 -20.30127 -20.12515 -19.24571 -18.83238 -18.73509 -18.34325 -17.49828 -17.20194 -16.89010 -16.56242 -16.43105 -16.19274 -15.92723 -15.35381 -15.12625 -14.76247 -14.54554 -14.43272 -14.36260 -14.03767 -13.97291 -13.74627 -13.49248 -13.35314 -13.22942 -13.17432 -12.91825 -12.85485 -12.72602 -12.62652 -12.59865 -12.55802 -12.22918 -11.85839 -11.78822 -11.69082 -11.18681 -11.10063 -10.86358 -10.75732 -10.28797 -9.82226 -9.01672 -8.35106 -6.52990 1.06899 1.18984 1.34477 1.36511 1.48644 1.50141 1.66695 1.95185 1.96843 2.32931 2.34855 2.94070 3.19149 3.72172 3.86684 3.92158 3.97022 4.06586 4.25984 4.27135 4.33182 4.35658 4.45642 4.61917 4.63529 4.70820 4.75122 4.77689 4.83970 4.86610 4.88725 4.98424 5.07053 5.16388 5.21220 5.36971 5.45935 5.50524 5.50717 5.58247 5.80194 6.06969 6.33241 6.40111 6.63125 6.79816 6.86468 7.13198 7.14868 7.18588 8.71009 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020294 B = 0.002127 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.390043 B =13159.058011 C =13721.357762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.053 3.947 3 N -0.352 5.352 4 N -0.357 5.357 5 C 0.275 3.725 6 C -0.551 4.551 7 H 0.047 0.953 8 C 0.021 3.979 9 N -0.918 5.918 10 Si 0.972 3.028 11 H -0.274 1.274 12 H -0.265 1.265 13 H -0.274 1.274 14 C 0.079 3.921 15 C -0.087 4.087 16 C -0.258 4.258 17 C -0.003 4.003 18 C -0.126 4.126 19 C 0.529 3.471 20 O -0.566 6.566 21 N -0.711 5.711 22 C 0.150 3.850 23 H 0.145 0.855 24 C 0.074 3.926 25 O -0.588 6.588 26 C 0.495 3.505 27 O -0.539 6.539 28 O -0.502 6.502 29 H 0.079 0.921 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.047 0.953 33 H 0.018 0.982 34 H 0.273 0.727 35 H 0.092 0.908 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.415 0.585 43 H 0.064 0.936 44 H 0.091 0.909 45 H 0.403 0.597 46 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 -25.871 -8.944 29.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.111 4.111 3 N -0.175 5.175 4 N -0.137 5.137 5 C 0.156 3.844 6 C -0.590 4.590 7 H 0.065 0.935 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.796 3.204 11 H -0.199 1.199 12 H -0.190 1.190 13 H -0.200 1.200 14 C -0.051 4.051 15 C -0.145 4.145 16 C -0.270 4.270 17 C -0.042 4.042 18 C -0.166 4.166 19 C 0.318 3.682 20 O -0.445 6.445 21 N -0.366 5.366 22 C 0.043 3.957 23 H 0.162 0.838 24 C -0.005 4.005 25 O -0.398 6.398 26 C 0.337 3.663 27 O -0.429 6.429 28 O -0.315 6.315 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.077 0.923 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.253 0.747 43 H 0.083 0.917 44 H 0.109 0.891 45 H 0.254 0.746 46 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -12.314 -24.072 -8.302 28.285 hybrid contribution 0.754 -0.143 -0.103 0.775 sum -11.560 -24.215 -8.405 28.119 Atomic orbital electron populations 1.20206 0.84743 1.03808 1.03367 1.22797 0.98115 0.90268 0.99955 1.77201 0.87879 1.25113 1.27345 1.49007 1.05279 1.05210 1.54177 1.19117 0.79018 0.88751 0.97518 1.21459 1.13375 1.32320 0.91812 0.93486 1.25763 0.95481 0.94468 1.02314 1.70011 1.19438 1.33260 1.32963 0.85299 0.78432 0.78199 0.78492 1.19870 1.19016 1.19978 1.21483 0.98274 0.84644 1.00693 1.20486 0.92321 0.97849 1.03834 1.19728 0.90311 0.96587 1.20341 1.19379 1.01654 0.88294 0.94824 1.21641 1.04340 0.90769 0.99828 1.20964 0.75657 0.89081 0.82501 1.90697 1.52666 1.69061 1.32037 1.45782 1.68515 1.12172 1.10095 1.20619 0.96415 0.83938 0.94709 0.83773 1.22495 0.90612 0.98690 0.88724 1.86425 1.41507 1.70037 1.41794 1.23079 0.75185 0.79971 0.88081 1.90731 1.57058 1.47893 1.47171 1.84421 1.67855 1.32349 1.46884 0.90224 0.91279 0.88381 0.93550 0.96385 0.91736 0.88999 0.92341 0.88003 0.90763 0.91243 0.87828 0.87531 0.74708 0.91745 0.89071 0.74552 0.70424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.67 10.12 71.23 0.72 -0.95 16 2 C 0.05 2.01 7.22 43.10 0.31 2.32 16 3 N -0.35 -16.67 12.58 -47.39 -0.60 -17.27 16 4 N -0.36 -17.25 3.60 -338.41 -1.22 -18.47 16 5 C 0.28 14.88 5.81 85.63 0.50 15.38 16 6 C -0.55 -31.60 9.39 25.60 0.24 -31.36 16 7 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 8 C 0.02 1.15 5.46 84.65 0.46 1.61 16 9 N -0.92 -52.73 13.29 21.45 0.28 -52.44 16 10 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 C 0.08 3.11 6.93 41.40 0.29 3.40 16 15 C -0.09 -2.76 9.68 71.23 0.69 -2.08 16 16 C -0.26 -8.85 5.35 -20.14 -0.11 -8.96 16 17 C 0.00 -0.07 4.45 29.85 0.13 0.07 16 18 C -0.13 -2.53 5.68 29.85 0.17 -2.36 16 19 C 0.53 10.69 7.79 87.66 0.68 11.38 16 20 O -0.57 -14.42 15.64 -3.04 -0.05 -14.47 16 21 N -0.71 -12.01 4.90 -446.10 -2.19 -14.20 16 22 C 0.15 2.13 2.88 44.24 0.13 2.26 16 23 H 0.14 1.89 7.58 -2.39 -0.02 1.87 16 24 C 0.07 0.81 6.78 71.98 0.49 1.30 16 25 O -0.59 -7.09 13.09 -148.98 -1.95 -9.04 16 26 C 0.49 7.35 7.21 71.24 0.51 7.86 16 27 O -0.54 -11.44 16.60 21.95 0.36 -11.07 16 28 O -0.50 -4.28 13.35 -51.41 -0.69 -4.97 16 29 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.10 2.00 7.92 -2.39 -0.02 1.98 16 32 H 0.05 2.48 7.68 -2.39 -0.02 2.47 16 33 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 35 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 36 H 0.06 2.14 7.74 -2.38 -0.02 2.12 16 37 H 0.10 2.64 7.14 -2.38 -0.02 2.62 16 38 H 0.07 1.87 7.88 -2.38 -0.02 1.85 16 39 H 0.07 1.80 7.09 -2.39 -0.02 1.79 16 40 H 0.10 1.95 8.14 -2.38 -0.02 1.93 16 41 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.42 6.98 7.79 -92.71 -0.72 6.25 16 43 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 45 H 0.40 1.47 9.12 -74.06 -0.68 0.79 16 46 H 0.43 0.30 9.10 -74.05 -0.67 -0.38 16 Total: -1.00 -79.58 398.95 0.18 -79.40 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -1.03 Total: 16.83 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 5.22 Total: -0.15 kcal Atomic # 7 Polarization: -98.66 SS G_CDS: -3.71 Total: -102.38 kcal Atomic # 8 Polarization: -37.23 SS G_CDS: -2.32 Total: -39.55 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -79.58 0.18 -79.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600783096.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.149 kcal (2) G-P(sol) polarization free energy of solvation -79.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds