Wall clock time and date at job start Sat Apr 11 2020 05:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30837 * 125.89739 * 2 1 4 4 N 1.40086 * 108.20700 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.04129 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02579 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.34955 * 107.92007 * 0.26426 * 4 3 2 15 15 C 1.50708 * 126.12162 * 179.73553 * 14 4 3 16 16 C 1.35316 * 107.74718 * 359.57319 * 14 4 3 17 17 C 1.50702 * 126.03724 * 180.15850 * 16 14 4 18 18 C 1.52999 * 109.47451 * 270.28570 * 17 16 14 19 19 C 1.50695 * 109.46918 * 180.02562 * 18 17 16 20 20 O 1.21273 * 120.00539 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99639 * 179.97438 * 19 18 17 22 22 C 1.46497 * 120.00031 * 179.97438 * 21 19 18 23 23 H 1.09001 * 109.47477 * 325.00713 * 22 21 19 24 24 C 1.53001 * 109.46808 * 85.00504 * 22 21 19 25 25 O 1.42899 * 109.47421 * 65.00009 * 24 22 21 26 26 C 1.50699 * 109.47169 * 205.00228 * 22 21 19 27 27 O 1.20823 * 120.00441 * 0.02562 * 26 22 21 28 28 O 1.34237 * 119.99808 * 180.02562 * 26 22 21 29 29 H 1.08999 * 109.46544 * 90.02549 * 1 2 3 30 30 H 1.09000 * 109.47294 * 210.02512 * 1 2 3 31 31 H 1.08993 * 109.46794 * 330.02928 * 1 2 3 32 32 H 1.09004 * 109.47166 * 330.02845 * 5 4 3 33 33 H 1.08994 * 109.47507 * 210.02551 * 5 4 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47042 * 90.02700 * 15 14 4 36 36 H 1.09007 * 109.46511 * 210.02061 * 15 14 4 37 37 H 1.08991 * 109.47237 * 330.02091 * 15 14 4 38 38 H 1.09001 * 109.46924 * 30.28937 * 17 16 14 39 39 H 1.09002 * 109.46528 * 150.28490 * 17 16 14 40 40 H 1.08997 * 109.46981 * 300.00397 * 18 17 16 41 41 H 1.09000 * 109.46794 * 59.99860 * 18 17 16 42 42 H 0.97005 * 120.00193 * 0.02562 * 21 19 18 43 43 H 1.09002 * 109.46913 * 185.00336 * 24 22 21 44 44 H 1.09001 * 109.47205 * 304.99483 * 24 22 21 45 45 H 0.96700 * 114.00232 * 180.02562 * 25 24 22 46 46 H 0.96694 * 116.99986 * 179.97438 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5008 0.0003 6 6 5.1949 1.7984 1.4210 7 1 4.6294 1.3832 2.2421 8 6 6.2914 2.5957 1.6727 9 7 6.9803 3.1011 0.6729 10 14 6.7979 2.9583 3.4337 11 1 7.1128 1.6852 4.1303 12 1 7.9981 3.8329 3.4334 13 1 5.6854 3.6456 4.1374 14 6 3.6142 -0.7153 -0.0050 15 6 4.8352 -1.5988 -0.0121 16 6 2.3272 -1.1330 0.0006 17 6 1.8600 -2.5658 0.0008 18 6 1.7017 -3.0508 -1.4416 19 6 1.2340 -4.4834 -1.4413 20 8 1.0461 -5.0598 -0.3910 21 7 1.0243 -5.1240 -2.6085 22 6 0.5702 -6.5168 -2.6083 23 1 1.0183 -7.0450 -1.7667 24 6 -0.9541 -6.5560 -2.4818 25 8 -1.5438 -5.9663 -3.6421 26 6 0.9846 -7.1805 -3.8962 27 8 1.5969 -6.5545 -4.7287 28 8 0.6734 -8.4672 -4.1186 29 1 -0.3632 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 4.5563 2.4332 -0.5138 33 1 5.6093 0.9981 -0.5134 34 1 7.7514 3.6623 0.8499 35 1 5.1321 -1.8165 1.0139 36 1 4.6063 -2.5306 -0.5295 37 1 5.6498 -1.0886 -0.5258 38 1 2.5935 -3.1870 0.5147 39 1 0.9012 -2.6352 0.5147 40 1 0.9682 -2.4295 -1.9554 41 1 2.6605 -2.9813 -1.9555 42 1 1.1749 -4.6631 -3.4486 43 1 -1.2847 -7.5909 -2.3923 44 1 -1.2597 -5.9992 -1.5960 45 1 -2.5107 -5.9565 -3.6303 46 1 0.9601 -8.8492 -4.9593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600783097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:21 Heat of formation + Delta-G solvation = -121.222622 kcal Electronic energy + Delta-G solvation = -29162.159310 eV Core-core repulsion = 24859.992917 eV Total energy + Delta-G solvation = -4302.166393 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11142 -40.59267 -39.64360 -37.42346 -36.67382 -34.79254 -34.37568 -33.39640 -32.47857 -30.90934 -29.74782 -28.94743 -26.72630 -25.86671 -25.11630 -23.89127 -22.34710 -21.45807 -20.57185 -18.81000 -18.65997 -18.57707 -18.12114 -17.75880 -16.73747 -16.60600 -16.27973 -15.87727 -15.63580 -15.41315 -14.82147 -14.48128 -14.37790 -14.02003 -13.85455 -13.62658 -13.15493 -13.05022 -12.89838 -12.61620 -12.47075 -12.33126 -12.30910 -12.11181 -11.99770 -11.78737 -11.64529 -11.33245 -11.25814 -11.14413 -10.98289 -10.78344 -10.72919 -10.58881 -10.25884 -10.04781 -9.74418 -9.61171 -9.53145 -8.63890 -8.17441 -7.47167 -6.25805 -4.33135 1.68951 2.14797 2.47511 2.77015 2.97678 3.23397 3.27185 3.31134 3.40118 3.61890 3.62558 4.30015 4.39374 4.51636 4.65306 4.81436 4.98244 5.07784 5.11347 5.19190 5.27581 5.34462 5.41395 5.65896 5.74400 5.82162 5.94177 5.95554 5.97628 5.98181 6.03388 6.06879 6.24370 6.37555 6.44334 6.55234 6.85989 7.03903 7.05177 7.12639 7.17883 7.35593 7.52309 7.66691 7.89028 7.97112 8.06632 8.67447 8.76015 9.33121 10.81767 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.002109 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.380320 B =13272.029254 C =13816.800785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.051 3.949 3 N -0.297 5.297 4 N -0.325 5.325 5 C 0.257 3.743 6 C -0.535 4.535 7 H 0.063 0.937 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.907 3.093 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.094 3.906 15 C -0.086 4.086 16 C -0.270 4.270 17 C -0.010 4.010 18 C -0.132 4.132 19 C 0.522 3.478 20 O -0.539 6.539 21 N -0.718 5.718 22 C 0.159 3.841 23 H 0.139 0.861 24 C 0.069 3.931 25 O -0.571 6.571 26 C 0.487 3.513 27 O -0.504 6.504 28 O -0.511 6.511 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.268 0.732 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.414 0.586 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.386 0.614 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.912 -22.340 -9.158 28.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.114 4.114 3 N -0.121 5.121 4 N -0.104 5.104 5 C 0.139 3.861 6 C -0.574 4.574 7 H 0.081 0.919 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.734 3.266 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.200 1.200 14 C -0.037 4.037 15 C -0.145 4.145 16 C -0.282 4.282 17 C -0.049 4.049 18 C -0.172 4.172 19 C 0.310 3.690 20 O -0.415 6.415 21 N -0.374 5.374 22 C 0.051 3.949 23 H 0.156 0.844 24 C -0.010 4.010 25 O -0.377 6.377 26 C 0.328 3.672 27 O -0.391 6.391 28 O -0.323 6.323 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.251 0.749 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.234 0.766 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -14.018 -20.799 -8.477 26.476 hybrid contribution 0.166 -0.630 0.039 0.652 sum -13.851 -21.429 -8.438 26.875 Atomic orbital electron populations 1.20026 0.88064 1.02396 1.01822 1.21942 0.96107 0.90767 1.02543 1.77276 0.87495 1.22677 1.24643 1.49244 1.05782 1.04210 1.51186 1.19648 0.77976 0.89538 0.98902 1.21264 1.12856 1.31947 0.91332 0.91860 1.24931 0.95715 0.95029 0.98135 1.69912 1.18928 1.33076 1.31080 0.86408 0.78019 0.78475 0.83746 1.19943 1.20950 1.19953 1.20786 0.96122 0.85685 1.01133 1.20356 0.93776 0.97166 1.03166 1.19324 0.91348 0.95027 1.22489 1.19396 1.01641 0.90971 0.92869 1.21763 1.03365 0.90419 1.01634 1.21163 0.75769 0.89519 0.82520 1.90699 1.51314 1.68373 1.31122 1.45884 1.69761 1.11099 1.10638 1.20395 0.94893 0.85074 0.94491 0.84350 1.22539 0.90714 0.98591 0.89193 1.86471 1.25560 1.83861 1.41799 1.23088 0.75444 0.80068 0.88596 1.90739 1.37737 1.64512 1.46076 1.84460 1.75283 1.27119 1.45450 0.91578 0.91255 0.91592 0.93086 0.93095 0.92206 0.90446 0.91072 0.90921 0.91320 0.91199 0.88598 0.88687 0.74869 0.91289 0.91076 0.76586 0.72525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.26 36.01 0.37 -0.54 16 2 C 0.05 0.96 7.22 -82.40 -0.59 0.36 16 3 N -0.30 -6.84 12.58 33.67 0.42 -6.41 16 4 N -0.32 -7.60 3.60 -58.31 -0.21 -7.81 16 5 C 0.26 6.63 6.00 -5.20 -0.03 6.60 16 6 C -0.54 -14.87 9.39 -34.44 -0.32 -15.19 16 7 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 8 C 0.07 1.79 5.46 -17.82 -0.10 1.70 16 9 N -0.89 -25.24 13.29 55.43 0.74 -24.51 16 10 Si 0.91 21.28 29.54 -169.99 -5.02 16.26 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 14 C 0.09 1.87 6.93 -82.26 -0.57 1.30 16 15 C -0.09 -1.42 9.72 36.01 0.35 -1.07 16 16 C -0.27 -4.76 5.35 -105.05 -0.56 -5.33 16 17 C -0.01 -0.14 4.41 -27.88 -0.12 -0.26 16 18 C -0.13 -1.48 5.68 -27.89 -0.16 -1.64 16 19 C 0.52 5.83 7.79 -10.99 -0.09 5.74 16 20 O -0.54 -7.40 15.64 5.56 0.09 -7.32 16 21 N -0.72 -6.73 4.90 -54.94 -0.27 -7.00 16 22 C 0.16 1.28 2.88 -69.08 -0.20 1.09 16 23 H 0.14 1.06 7.58 -51.93 -0.39 0.66 16 24 C 0.07 0.44 6.78 37.16 0.25 0.70 16 25 O -0.57 -3.89 13.09 -35.23 -0.46 -4.35 16 26 C 0.49 4.11 7.21 36.01 0.26 4.37 16 27 O -0.50 -5.74 16.60 -18.75 -0.31 -6.05 16 28 O -0.51 -2.84 13.35 -39.28 -0.52 -3.36 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.84 7.26 -51.93 -0.38 0.46 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.05 1.30 7.04 -51.93 -0.37 0.93 16 34 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 37 H 0.07 1.23 7.07 -51.93 -0.37 0.86 16 38 H 0.07 0.98 7.75 -51.93 -0.40 0.58 16 39 H 0.07 0.96 7.21 -51.93 -0.37 0.59 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.41 3.82 7.79 -40.82 -0.32 3.50 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.39 0.98 9.12 45.56 0.42 1.40 16 46 H 0.42 0.68 9.10 45.56 0.41 1.09 16 LS Contribution 397.96 15.07 6.00 6.00 Total: -1.00 -35.98 397.96 -6.17 -42.14 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.10 Total: 4.59 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.51 Total: -2.17 kcal Atomic # 7 Polarization: -46.41 SS G_CDS: 0.68 Total: -45.73 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -1.21 Total: -21.08 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.98 -6.17 -42.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600783097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.082 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds