Wall clock time and date at job start Sat Apr 11 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30837 * 125.89739 * 2 1 4 4 N 1.40086 * 108.20700 * 179.97438 * 3 2 1 5 5 C 1.46491 * 126.04129 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46957 * 90.02579 * 5 4 3 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 4 8 8 C 1.37884 * 119.99942 * 179.72213 * 6 5 4 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48504 * 109.47196 * 60.00645 * 10 8 6 12 12 H 1.48504 * 109.46887 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47679 * 300.00280 * 10 8 6 14 14 C 1.34955 * 107.92007 * 0.26426 * 4 3 2 15 15 C 1.50708 * 126.12162 * 179.73553 * 14 4 3 16 16 C 1.35316 * 107.74718 * 359.57319 * 14 4 3 17 17 C 1.50702 * 126.03724 * 180.15850 * 16 14 4 18 18 C 1.52999 * 109.47451 * 270.28570 * 17 16 14 19 19 C 1.50695 * 109.46918 * 180.02562 * 18 17 16 20 20 O 1.21273 * 120.00539 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99639 * 179.97438 * 19 18 17 22 22 C 1.46497 * 120.00031 * 179.97438 * 21 19 18 23 23 H 1.09001 * 109.47477 * 325.00713 * 22 21 19 24 24 C 1.53001 * 109.46808 * 85.00504 * 22 21 19 25 25 O 1.42899 * 109.47421 * 65.00009 * 24 22 21 26 26 C 1.50699 * 109.47169 * 205.00228 * 22 21 19 27 27 O 1.20823 * 120.00441 * 0.02562 * 26 22 21 28 28 O 1.34237 * 119.99808 * 180.02562 * 26 22 21 29 29 H 1.08999 * 109.46544 * 90.02549 * 1 2 3 30 30 H 1.09000 * 109.47294 * 210.02512 * 1 2 3 31 31 H 1.08993 * 109.46794 * 330.02928 * 1 2 3 32 32 H 1.09004 * 109.47166 * 330.02845 * 5 4 3 33 33 H 1.08994 * 109.47507 * 210.02551 * 5 4 3 34 34 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 35 35 H 1.09003 * 109.47042 * 90.02700 * 15 14 4 36 36 H 1.09007 * 109.46511 * 210.02061 * 15 14 4 37 37 H 1.08991 * 109.47237 * 330.02091 * 15 14 4 38 38 H 1.09001 * 109.46924 * 30.28937 * 17 16 14 39 39 H 1.09002 * 109.46528 * 150.28490 * 17 16 14 40 40 H 1.08997 * 109.46981 * 300.00397 * 18 17 16 41 41 H 1.09000 * 109.46794 * 59.99860 * 18 17 16 42 42 H 0.97005 * 120.00193 * 0.02562 * 21 19 18 43 43 H 1.09002 * 109.46913 * 185.00336 * 24 22 21 44 44 H 1.09001 * 109.47205 * 304.99483 * 24 22 21 45 45 H 0.96700 * 114.00232 * 180.02562 * 25 24 22 46 46 H 0.96694 * 116.99986 * 179.97438 * 28 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6342 0.0006 5 6 4.7899 1.5008 0.0003 6 6 5.1949 1.7984 1.4210 7 1 4.6294 1.3832 2.2421 8 6 6.2914 2.5957 1.6727 9 7 6.9803 3.1011 0.6729 10 14 6.7979 2.9583 3.4337 11 1 7.1128 1.6852 4.1303 12 1 7.9981 3.8329 3.4334 13 1 5.6854 3.6456 4.1374 14 6 3.6142 -0.7153 -0.0050 15 6 4.8352 -1.5988 -0.0121 16 6 2.3272 -1.1330 0.0006 17 6 1.8600 -2.5658 0.0008 18 6 1.7017 -3.0508 -1.4416 19 6 1.2340 -4.4834 -1.4413 20 8 1.0461 -5.0598 -0.3910 21 7 1.0243 -5.1240 -2.6085 22 6 0.5702 -6.5168 -2.6083 23 1 1.0183 -7.0450 -1.7667 24 6 -0.9541 -6.5560 -2.4818 25 8 -1.5438 -5.9663 -3.6421 26 6 0.9846 -7.1805 -3.8962 27 8 1.5969 -6.5545 -4.7287 28 8 0.6734 -8.4672 -4.1186 29 1 -0.3632 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5134 32 1 4.5563 2.4332 -0.5138 33 1 5.6093 0.9981 -0.5134 34 1 7.7514 3.6623 0.8499 35 1 5.1321 -1.8165 1.0139 36 1 4.6063 -2.5306 -0.5295 37 1 5.6498 -1.0886 -0.5258 38 1 2.5935 -3.1870 0.5147 39 1 0.9012 -2.6352 0.5147 40 1 0.9682 -2.4295 -1.9554 41 1 2.6605 -2.9813 -1.9555 42 1 1.1749 -4.6631 -3.4486 43 1 -1.2847 -7.5909 -2.3923 44 1 -1.2597 -5.9992 -1.5960 45 1 -2.5107 -5.9565 -3.6303 46 1 0.9601 -8.8492 -4.9593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600783097.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:20 Heat of formation + Delta-G solvation = -150.186407 kcal Electronic energy + Delta-G solvation = -29163.415274 eV Core-core repulsion = 24859.992917 eV Total energy + Delta-G solvation = -4303.422357 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.15307 -41.73692 -40.47077 -37.95807 -37.25495 -36.10399 -35.47035 -34.84620 -34.18350 -32.03450 -30.88216 -30.35741 -28.01798 -27.60579 -25.77174 -25.21970 -23.91957 -22.22434 -21.33273 -20.30010 -20.13162 -19.24579 -18.82698 -18.73324 -18.34020 -17.54029 -17.12915 -16.91623 -16.54862 -16.44781 -16.25611 -15.92172 -15.37530 -14.99493 -14.81109 -14.61993 -14.43216 -14.30733 -14.09868 -13.94054 -13.71296 -13.52565 -13.34213 -13.22950 -13.16907 -12.91404 -12.83855 -12.75136 -12.63249 -12.59421 -12.56743 -12.21558 -11.84465 -11.79463 -11.72386 -11.17717 -11.10345 -10.86282 -10.75255 -10.28678 -9.82873 -9.01485 -8.34824 -6.52753 1.06862 1.18571 1.35998 1.37717 1.46628 1.49603 1.67154 1.95301 1.95993 2.33091 2.34764 2.94490 3.19460 3.72198 3.87955 3.90901 3.96776 4.06877 4.24339 4.26796 4.33159 4.37369 4.46271 4.58565 4.63808 4.66240 4.73560 4.74743 4.86238 4.88643 4.91750 4.98155 5.05281 5.15813 5.21221 5.37029 5.46248 5.50426 5.50682 5.57564 5.80208 6.07591 6.32644 6.40167 6.62268 6.80843 6.86265 7.13154 7.14930 7.18507 8.70990 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.002109 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.380320 B =13272.029254 C =13816.800785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.054 3.946 3 N -0.351 5.351 4 N -0.356 5.356 5 C 0.275 3.725 6 C -0.553 4.553 7 H 0.048 0.952 8 C 0.021 3.979 9 N -0.919 5.919 10 Si 0.971 3.029 11 H -0.265 1.265 12 H -0.272 1.272 13 H -0.276 1.276 14 C 0.077 3.923 15 C -0.083 4.083 16 C -0.257 4.257 17 C -0.003 4.003 18 C -0.126 4.126 19 C 0.529 3.471 20 O -0.566 6.566 21 N -0.711 5.711 22 C 0.149 3.851 23 H 0.144 0.856 24 C 0.075 3.925 25 O -0.588 6.588 26 C 0.494 3.506 27 O -0.539 6.539 28 O -0.502 6.502 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.018 0.982 33 H 0.046 0.954 34 H 0.274 0.726 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.415 0.585 43 H 0.091 0.909 44 H 0.066 0.934 45 H 0.403 0.597 46 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.230 -24.591 -8.927 30.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.175 5.175 4 N -0.136 5.136 5 C 0.156 3.844 6 C -0.591 4.591 7 H 0.066 0.934 8 C -0.180 4.180 9 N -0.557 5.557 10 Si 0.795 3.205 11 H -0.189 1.189 12 H -0.196 1.196 13 H -0.201 1.201 14 C -0.052 4.052 15 C -0.141 4.141 16 C -0.269 4.269 17 C -0.042 4.042 18 C -0.166 4.166 19 C 0.318 3.682 20 O -0.444 6.444 21 N -0.366 5.366 22 C 0.043 3.957 23 H 0.161 0.839 24 C -0.004 4.004 25 O -0.397 6.397 26 C 0.336 3.664 27 O -0.429 6.429 28 O -0.315 6.315 29 H 0.108 0.892 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.127 0.873 41 H 0.120 0.880 42 H 0.253 0.747 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.255 0.745 46 H 0.296 0.704 Dipole moment (debyes) X Y Z Total from point charges -15.369 -23.105 -8.282 28.960 hybrid contribution 0.451 -0.048 -0.115 0.467 sum -14.919 -23.154 -8.397 28.795 Atomic orbital electron populations 1.20219 0.84592 1.03549 1.03749 1.22810 0.98184 0.90182 0.99863 1.77210 0.87789 1.25120 1.27403 1.48997 1.05338 1.05190 1.54117 1.19110 0.79053 0.88697 0.97537 1.21400 1.13269 1.32625 0.91808 0.93411 1.25769 0.95438 0.94470 1.02346 1.70001 1.19271 1.33331 1.33086 0.85407 0.77792 0.78697 0.78606 1.18931 1.19639 1.20088 1.21479 0.98257 0.84662 1.00842 1.20444 0.92263 0.97912 1.03495 1.19725 0.90251 0.96630 1.20312 1.19378 1.01693 0.88263 0.94830 1.21642 1.04269 0.90862 0.99830 1.20959 0.75457 0.89283 0.82500 1.90695 1.52805 1.68911 1.32038 1.45786 1.68943 1.11747 1.10098 1.20625 0.96277 0.84233 0.94586 0.83882 1.22484 0.89345 0.99773 0.88811 1.86428 1.27357 1.84032 1.41921 1.23102 0.74552 0.80555 0.88161 1.90732 1.39474 1.65460 1.47231 1.84419 1.74694 1.25664 1.46739 0.89152 0.88731 0.91770 0.96399 0.93626 0.91734 0.90455 0.87522 0.92023 0.91479 0.90503 0.87290 0.88043 0.74706 0.89107 0.91585 0.74545 0.70436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.62 10.26 71.24 0.73 -0.89 16 2 C 0.05 2.02 7.22 43.10 0.31 2.33 16 3 N -0.35 -16.60 12.58 -47.38 -0.60 -17.20 16 4 N -0.36 -17.28 3.60 -338.41 -1.22 -18.50 16 5 C 0.28 14.95 6.00 85.64 0.51 15.47 16 6 C -0.55 -31.78 9.39 25.60 0.24 -31.54 16 7 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 8 C 0.02 1.16 5.46 84.66 0.46 1.62 16 9 N -0.92 -53.01 13.29 21.45 0.28 -52.73 16 10 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 11 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 14 C 0.08 3.08 6.93 41.41 0.29 3.36 16 15 C -0.08 -2.70 9.72 71.24 0.69 -2.01 16 16 C -0.26 -8.82 5.35 -20.14 -0.11 -8.93 16 17 C 0.00 -0.07 4.41 29.85 0.13 0.06 16 18 C -0.13 -2.53 5.68 29.85 0.17 -2.36 16 19 C 0.53 10.66 7.79 87.65 0.68 11.35 16 20 O -0.57 -14.39 15.64 -3.01 -0.05 -14.43 16 21 N -0.71 -11.99 4.90 -446.11 -2.19 -14.17 16 22 C 0.15 2.12 2.88 44.25 0.13 2.25 16 23 H 0.14 1.91 7.58 -2.39 -0.02 1.89 16 24 C 0.07 0.78 6.78 71.98 0.49 1.27 16 25 O -0.59 -6.67 13.09 -148.98 -1.95 -8.62 16 26 C 0.49 7.44 7.21 71.24 0.51 7.95 16 27 O -0.54 -11.63 16.60 21.97 0.36 -11.26 16 28 O -0.50 -4.37 13.35 -51.48 -0.69 -5.06 16 29 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.09 1.98 7.26 -2.39 -0.02 1.96 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.02 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.05 2.46 7.04 -2.39 -0.02 2.45 16 34 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 35 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.11 2.63 7.79 -2.38 -0.02 2.61 16 37 H 0.06 2.12 7.07 -2.39 -0.02 2.11 16 38 H 0.07 1.77 7.75 -2.39 -0.02 1.75 16 39 H 0.08 1.90 7.21 -2.39 -0.02 1.88 16 40 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.42 6.96 7.79 -92.70 -0.72 6.24 16 43 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.40 1.10 9.12 -74.06 -0.68 0.42 16 46 H 0.43 0.40 9.10 -74.06 -0.67 -0.27 16 Total: -1.00 -79.75 397.96 0.21 -79.54 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -1.02 Total: 16.58 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 5.24 Total: -0.06 kcal Atomic # 7 Polarization: -98.89 SS G_CDS: -3.71 Total: -102.60 kcal Atomic # 8 Polarization: -37.05 SS G_CDS: -2.32 Total: -39.37 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -79.75 0.21 -79.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600783097.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.646 kcal (2) G-P(sol) polarization free energy of solvation -79.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds