Wall clock time and date at job start Sat Apr 11 2020 05:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00265 * 2 1 4 4 H 1.48499 * 109.47408 * 240.00146 * 3 2 1 5 5 H 1.48507 * 109.46849 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47519 * 119.99464 * 3 2 1 7 7 C 1.38956 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00187 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00104 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99996 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47209 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00501 * 179.97438 * 13 12 10 15 15 C 1.53348 * 109.41892 * 275.13292 * 14 13 12 16 16 C 1.53193 * 109.15079 * 178.67086 * 15 14 13 17 17 N 1.46929 * 108.89253 * 54.57357 * 16 15 14 18 18 C 1.34779 * 120.63111 * 126.29797 * 17 16 15 19 19 O 1.21286 * 119.99769 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00254 * 179.97438 * 18 17 16 21 21 H 1.09004 * 115.55263 * 309.37093 * 20 18 17 22 22 C 1.52997 * 117.49799 * 163.65295 * 20 18 17 23 23 C 1.53003 * 60.00169 * 252.51391 * 22 20 18 24 24 H 1.09003 * 117.50084 * 252.51181 * 23 22 20 25 25 C 1.50698 * 117.51741 * 107.48204 * 23 22 20 26 26 O 1.20836 * 119.99668 * 23.63685 * 25 23 22 27 27 O 1.34223 * 120.00310 * 203.63817 * 25 23 22 28 28 C 1.46925 * 118.74003 * 306.32071 * 17 16 15 29 29 C 1.53044 * 109.46493 * 154.99900 * 14 13 12 30 30 H 0.96997 * 120.00281 * 359.97438 * 1 2 3 31 31 H 0.97008 * 120.00121 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47310 * 59.99921 * 12 10 9 33 33 H 1.08999 * 109.47265 * 299.99885 * 12 10 9 34 34 H 1.00896 * 111.00226 * 56.04251 * 13 12 10 35 35 H 1.09003 * 109.45762 * 35.02648 * 14 13 12 36 36 H 1.08993 * 109.68773 * 58.70647 * 15 14 13 37 37 H 1.09000 * 109.47309 * 298.50275 * 15 14 13 38 38 H 1.08999 * 109.58639 * 294.71846 * 16 15 14 39 39 H 1.08995 * 109.58940 * 174.43017 * 16 15 14 40 40 H 1.08990 * 117.50055 * 0.02562 * 22 20 18 41 41 H 1.09002 * 117.49554 * 145.02371 * 22 20 18 42 42 H 0.96694 * 117.00214 * 179.97438 * 27 25 23 43 43 H 1.09005 * 109.58899 * 173.39470 * 28 17 16 44 44 H 1.08999 * 109.58951 * 293.67709 * 28 17 16 45 45 H 1.08997 * 109.49343 * 61.43787 * 29 14 13 46 46 H 1.09002 * 109.51990 * 301.35558 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0010 13 7 2.1982 -5.9795 0.0017 14 6 1.4980 -7.2708 0.0018 15 6 1.1406 -7.6569 1.4422 16 6 0.3817 -8.9877 1.4322 17 7 1.1866 -9.9890 0.7193 18 6 1.4866 -11.1682 1.2990 19 8 1.0910 -11.4111 2.4195 20 6 2.3127 -12.1853 0.5546 21 1 1.9733 -12.4190 -0.4546 22 6 2.9412 -13.3177 1.3691 23 6 3.8208 -12.1961 0.8129 24 1 4.4734 -12.4374 -0.0262 25 6 4.3663 -11.1886 1.7918 26 8 4.4847 -11.4822 2.9580 27 8 4.7208 -9.9652 1.3685 28 6 1.6586 -9.6803 -0.6374 29 6 2.4048 -8.3427 -0.6073 30 1 -0.4850 0.8400 0.0004 31 1 0.3533 -2.3907 -0.0002 32 1 0.6180 -4.9209 -0.8897 33 1 0.6160 -4.9205 0.8903 34 1 2.8325 -5.9125 0.7835 35 1 0.5853 -7.1890 -0.5885 36 1 0.5129 -6.8835 1.8847 37 1 2.0541 -7.7636 2.0271 38 1 -0.5745 -8.8592 0.9252 39 1 0.2106 -9.3184 2.4566 40 1 2.7568 -13.3273 2.4433 41 1 3.0151 -14.2969 0.8960 42 1 5.0651 -9.3533 2.0333 43 1 2.3322 -10.4668 -0.9778 44 1 0.8067 -9.6108 -1.3137 45 1 3.3065 -8.4426 -0.0031 46 1 2.6772 -8.0552 -1.6228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601074815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:37 Heat of formation + Delta-G solvation = -131.080255 kcal Electronic energy + Delta-G solvation = -29834.263520 eV Core-core repulsion = 25531.669668 eV Total energy + Delta-G solvation = -4302.593852 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.25694 -40.08342 -38.67085 -37.87713 -36.78716 -36.13867 -35.16710 -33.87923 -31.45426 -31.39298 -31.04823 -27.10203 -26.22589 -25.23315 -24.39439 -23.32410 -22.69950 -21.20316 -20.84162 -19.51006 -19.07991 -18.51923 -17.90739 -17.85429 -16.75627 -16.65666 -15.97856 -15.78197 -15.38075 -15.03881 -14.98372 -14.80298 -14.59618 -14.32638 -13.97022 -13.81158 -13.75472 -13.40833 -13.23247 -12.69943 -12.64714 -12.40856 -12.20838 -11.94151 -11.87939 -11.61716 -11.50501 -11.44786 -11.36997 -11.22147 -11.05967 -10.94721 -10.84110 -10.64822 -10.45500 -10.22868 -10.13426 -9.51587 -8.98207 -8.48261 -8.06164 -7.97334 -6.43180 -3.84072 1.70532 2.12055 2.44154 2.62183 3.19013 3.20244 3.24833 3.29152 3.88969 3.94038 4.04235 4.05782 4.17102 4.28538 4.50520 4.60366 4.68038 4.82211 4.84972 5.00403 5.05749 5.09214 5.13915 5.21210 5.23335 5.26639 5.34550 5.49906 5.56319 5.58666 5.66016 5.78653 5.82409 5.96620 5.99682 6.15767 6.18624 6.26460 6.29012 7.03789 7.20615 7.53543 7.55984 7.62702 7.80417 8.04507 8.59587 9.16276 9.52631 10.04054 10.74470 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.002112 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.744266 B =13256.273814 C =13743.658078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.300 4.300 8 H 0.102 0.898 9 N -0.564 5.564 10 C 0.440 3.560 11 O -0.584 6.584 12 C 0.050 3.950 13 N -0.661 5.661 14 C 0.088 3.912 15 C -0.165 4.165 16 C 0.115 3.885 17 N -0.601 5.601 18 C 0.535 3.465 19 O -0.532 6.532 20 C -0.164 4.164 21 H 0.143 0.857 22 C -0.114 4.114 23 C -0.143 4.143 24 H 0.151 0.849 25 C 0.502 3.498 26 O -0.501 6.501 27 O -0.505 6.505 28 C 0.109 3.891 29 C -0.123 4.123 30 H 0.272 0.728 31 H 0.392 0.608 32 H 0.085 0.915 33 H 0.043 0.957 34 H 0.349 0.651 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.090 0.910 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.415 0.585 43 H 0.087 0.913 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -25.597 -2.285 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.179 4.179 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.430 4.430 8 H 0.120 0.880 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.468 6.468 12 C -0.083 4.083 13 N -0.292 5.292 14 C -0.023 4.023 15 C -0.205 4.205 16 C -0.007 4.007 17 N -0.335 5.335 18 C 0.322 3.678 19 O -0.408 6.408 20 C -0.185 4.185 21 H 0.160 0.840 22 C -0.151 4.151 23 C -0.162 4.162 24 H 0.168 0.832 25 C 0.344 3.656 26 O -0.388 6.388 27 O -0.317 6.317 28 C -0.014 4.014 29 C -0.161 4.161 30 H 0.082 0.918 31 H 0.225 0.775 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.169 0.831 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.109 0.891 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.274 0.726 43 H 0.105 0.895 44 H 0.089 0.911 45 H 0.097 0.903 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.649 -25.848 -2.338 26.006 hybrid contribution -0.352 1.420 1.158 1.866 sum 1.298 -24.428 -1.180 24.491 Atomic orbital electron populations 1.69599 1.05936 1.28287 1.50503 1.25265 0.95642 0.99740 0.97299 0.85914 0.78763 0.80439 0.79083 1.19864 1.20980 1.19923 1.19649 0.93334 0.82248 1.47724 0.87988 1.41864 1.09194 1.04625 1.64337 1.19815 0.88391 0.84727 0.84514 1.90520 1.13772 1.87072 1.55438 1.21708 0.94437 0.91023 1.01083 1.60190 1.18383 0.99492 1.51123 1.21650 0.96794 0.89763 0.94043 1.22766 1.01452 0.96949 0.99371 1.21572 0.93321 0.87265 0.98583 1.48053 1.52721 1.15645 1.17032 1.19593 0.80328 0.82004 0.85892 1.90739 1.53445 1.77757 1.18894 1.22385 0.92369 1.00836 1.02906 0.83960 1.23180 0.96594 0.92889 1.02421 1.21784 0.93271 0.99197 1.01928 0.83170 1.22194 0.74421 0.81557 0.87474 1.90762 1.50080 1.78859 1.19133 1.84495 1.76128 1.24327 1.46765 1.21847 0.98926 0.98366 0.82309 1.21904 0.98971 0.92217 1.03049 0.91807 0.77473 0.89646 0.93930 0.83083 0.90440 0.90472 0.91333 0.91119 0.89146 0.86212 0.86033 0.72568 0.89509 0.91057 0.90341 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.38 13.05 55.50 0.72 -23.66 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 9 N -0.56 -14.12 5.29 -10.96 -0.06 -14.17 16 10 C 0.44 10.18 7.82 -10.99 -0.09 10.09 16 11 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 12 C 0.05 0.84 5.96 -4.98 -0.03 0.81 16 13 N -0.66 -9.86 5.87 -107.78 -0.63 -10.49 16 14 C 0.09 0.96 2.43 -67.51 -0.16 0.79 16 15 C -0.17 -1.72 5.36 -26.45 -0.14 -1.86 16 16 C 0.12 1.14 6.42 -3.71 -0.02 1.12 16 17 N -0.60 -5.58 2.97 -172.77 -0.51 -6.09 16 18 C 0.53 5.73 6.45 -10.99 -0.07 5.66 16 19 O -0.53 -7.89 15.80 5.55 0.09 -7.80 16 20 C -0.16 -1.12 4.43 -91.77 -0.41 -1.53 16 21 H 0.14 0.52 7.67 -51.93 -0.40 0.12 16 22 C -0.11 -0.76 9.55 -26.73 -0.26 -1.02 16 23 C -0.14 -0.96 6.29 -91.77 -0.58 -1.53 16 24 H 0.15 0.53 8.14 -51.93 -0.42 0.11 16 25 C 0.50 5.03 7.04 36.00 0.25 5.29 16 26 O -0.50 -6.89 17.28 -18.76 -0.32 -7.22 16 27 O -0.51 -4.20 12.47 -39.24 -0.49 -4.69 16 28 C 0.11 0.77 6.34 -3.71 -0.02 0.74 16 29 C -0.12 -1.12 5.69 -26.61 -0.15 -1.27 16 30 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 32 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 33 H 0.04 0.65 7.42 -51.93 -0.39 0.26 16 34 H 0.35 5.54 8.18 -39.29 -0.32 5.22 16 35 H 0.08 0.81 7.80 -51.93 -0.40 0.41 16 36 H 0.08 0.82 7.43 -51.93 -0.39 0.43 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.04 7.00 -51.93 -0.36 0.68 16 40 H 0.12 1.16 7.50 -51.93 -0.39 0.77 16 41 H 0.12 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.41 2.37 9.10 45.56 0.41 2.79 16 43 H 0.09 0.45 6.05 -51.93 -0.31 0.14 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.78 7.16 -51.93 -0.37 0.41 16 46 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -36.45 383.93 -7.98 -44.43 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: -5.71 Total: 14.15 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: -1.92 Total: 9.33 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.48 Total: -54.42 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.64 Total: -35.22 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.45 -7.98 -44.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.648 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds