Wall clock time and date at job start Sat Apr 11 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86795 * 120.00265 * 2 1 4 4 H 1.48499 * 109.47408 * 240.00146 * 3 2 1 5 5 H 1.48507 * 109.46849 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47519 * 119.99464 * 3 2 1 7 7 C 1.38956 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99657 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00253 * 0.02562 * 7 2 1 10 10 C 1.34774 * 120.00187 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00104 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99996 * 180.02562 * 10 9 7 13 13 N 1.46893 * 109.47209 * 179.97438 * 12 10 9 14 14 C 1.46897 * 111.00501 * 179.97438 * 13 12 10 15 15 C 1.53348 * 109.41892 * 275.13292 * 14 13 12 16 16 C 1.53193 * 109.15079 * 178.67086 * 15 14 13 17 17 N 1.46929 * 108.89253 * 54.57357 * 16 15 14 18 18 C 1.34779 * 120.63111 * 126.29797 * 17 16 15 19 19 O 1.21286 * 119.99769 * 0.02562 * 18 17 16 20 20 C 1.50699 * 120.00254 * 179.97438 * 18 17 16 21 21 H 1.09004 * 115.55263 * 309.37093 * 20 18 17 22 22 C 1.52997 * 117.49799 * 163.65295 * 20 18 17 23 23 C 1.53003 * 60.00169 * 252.51391 * 22 20 18 24 24 H 1.09003 * 117.50084 * 252.51181 * 23 22 20 25 25 C 1.50698 * 117.51741 * 107.48204 * 23 22 20 26 26 O 1.20836 * 119.99668 * 23.63685 * 25 23 22 27 27 O 1.34223 * 120.00310 * 203.63817 * 25 23 22 28 28 C 1.46925 * 118.74003 * 306.32071 * 17 16 15 29 29 C 1.53044 * 109.46493 * 154.99900 * 14 13 12 30 30 H 0.96997 * 120.00281 * 359.97438 * 1 2 3 31 31 H 0.97008 * 120.00121 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.47310 * 59.99921 * 12 10 9 33 33 H 1.08999 * 109.47265 * 299.99885 * 12 10 9 34 34 H 1.00896 * 111.00226 * 56.04251 * 13 12 10 35 35 H 1.09003 * 109.45762 * 35.02648 * 14 13 12 36 36 H 1.08993 * 109.68773 * 58.70647 * 15 14 13 37 37 H 1.09000 * 109.47309 * 298.50275 * 15 14 13 38 38 H 1.08999 * 109.58639 * 294.71846 * 16 15 14 39 39 H 1.08995 * 109.58940 * 174.43017 * 16 15 14 40 40 H 1.08990 * 117.50055 * 0.02562 * 22 20 18 41 41 H 1.09002 * 117.49554 * 145.02371 * 22 20 18 42 42 H 0.96694 * 117.00214 * 179.97438 * 27 25 23 43 43 H 1.09005 * 109.58899 * 173.39470 * 28 17 16 44 44 H 1.08999 * 109.58951 * 293.67709 * 28 17 16 45 45 H 1.08997 * 109.49343 * 61.43787 * 29 14 13 46 46 H 1.09002 * 109.51990 * 301.35558 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6176 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3234 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2101 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0010 13 7 2.1982 -5.9795 0.0017 14 6 1.4980 -7.2708 0.0018 15 6 1.1406 -7.6569 1.4422 16 6 0.3817 -8.9877 1.4322 17 7 1.1866 -9.9890 0.7193 18 6 1.4866 -11.1682 1.2990 19 8 1.0910 -11.4111 2.4195 20 6 2.3127 -12.1853 0.5546 21 1 1.9733 -12.4190 -0.4546 22 6 2.9412 -13.3177 1.3691 23 6 3.8208 -12.1961 0.8129 24 1 4.4734 -12.4374 -0.0262 25 6 4.3663 -11.1886 1.7918 26 8 4.4847 -11.4822 2.9580 27 8 4.7208 -9.9652 1.3685 28 6 1.6586 -9.6803 -0.6374 29 6 2.4048 -8.3427 -0.6073 30 1 -0.4850 0.8400 0.0004 31 1 0.3533 -2.3907 -0.0002 32 1 0.6180 -4.9209 -0.8897 33 1 0.6160 -4.9205 0.8903 34 1 2.8325 -5.9125 0.7835 35 1 0.5853 -7.1890 -0.5885 36 1 0.5129 -6.8835 1.8847 37 1 2.0541 -7.7636 2.0271 38 1 -0.5745 -8.8592 0.9252 39 1 0.2106 -9.3184 2.4566 40 1 2.7568 -13.3273 2.4433 41 1 3.0151 -14.2969 0.8960 42 1 5.0651 -9.3533 2.0333 43 1 2.3322 -10.4668 -0.9778 44 1 0.8067 -9.6108 -1.3137 45 1 3.3065 -8.4426 -0.0031 46 1 2.6772 -8.0552 -1.6228 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601074815.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:36 Heat of formation + Delta-G solvation = -160.313406 kcal Electronic energy + Delta-G solvation = -29835.531165 eV Core-core repulsion = 25531.669668 eV Total energy + Delta-G solvation = -4303.861497 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.98366 -40.90149 -40.18559 -39.03855 -37.49740 -36.90833 -36.35133 -35.75611 -33.29039 -32.31638 -32.11496 -28.44907 -27.03768 -26.37270 -25.56297 -24.29495 -23.50312 -21.83407 -21.67765 -21.08995 -20.06663 -19.82300 -19.24712 -18.63550 -17.82363 -17.43970 -17.30184 -16.76694 -16.49002 -16.30769 -16.08101 -15.97296 -15.58172 -15.45694 -15.23062 -15.12754 -14.75109 -14.44257 -14.03569 -13.95222 -13.67434 -13.50177 -13.41481 -13.10220 -12.98535 -12.85048 -12.66974 -12.57912 -12.43176 -12.22446 -12.12835 -12.05704 -11.84727 -11.66877 -11.57297 -11.50899 -11.47464 -10.93800 -10.33415 -10.01623 -9.76019 -9.26072 -8.46656 -5.95307 0.97430 1.36777 1.39669 1.41627 1.52382 1.79114 2.00428 2.06029 2.29027 2.64455 2.92225 3.20760 3.35824 3.52210 3.53498 3.63325 3.77150 3.91357 4.03575 4.14456 4.20422 4.29848 4.33073 4.35839 4.45567 4.53411 4.60310 4.68114 4.69922 4.75826 4.79514 4.83996 4.90944 5.01373 5.05232 5.18468 5.40130 5.42555 5.50760 5.52983 5.92472 6.14679 6.31195 6.40528 6.60352 6.85604 7.04211 7.12724 7.56790 8.12103 8.70450 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024347 B = 0.002112 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.744266 B =13256.273814 C =13743.658078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.271 1.271 5 H -0.271 1.271 6 H -0.273 1.273 7 C -0.334 4.334 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.437 3.563 11 O -0.624 6.624 12 C 0.065 3.935 13 N -0.671 5.671 14 C 0.091 3.909 15 C -0.156 4.156 16 C 0.117 3.883 17 N -0.598 5.598 18 C 0.523 3.477 19 O -0.586 6.586 20 C -0.158 4.158 21 H 0.188 0.812 22 C -0.118 4.118 23 C -0.138 4.138 24 H 0.194 0.806 25 C 0.496 3.504 26 O -0.551 6.551 27 O -0.501 6.501 28 C 0.110 3.890 29 C -0.118 4.118 30 H 0.278 0.722 31 H 0.396 0.604 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.341 0.659 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.090 0.910 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.162 0.838 42 H 0.422 0.578 43 H 0.115 0.885 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.780 -26.780 -4.749 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.196 1.196 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.067 4.067 13 N -0.302 5.302 14 C -0.019 4.019 15 C -0.196 4.196 16 C -0.007 4.007 17 N -0.330 5.330 18 C 0.312 3.688 19 O -0.466 6.466 20 C -0.178 4.178 21 H 0.205 0.795 22 C -0.155 4.155 23 C -0.157 4.157 24 H 0.211 0.789 25 C 0.340 3.660 26 O -0.442 6.442 27 O -0.314 6.314 28 C -0.012 4.012 29 C -0.157 4.157 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.125 0.875 33 H 0.081 0.919 34 H 0.159 0.841 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.180 0.820 42 H 0.283 0.717 43 H 0.133 0.867 44 H 0.112 0.888 45 H 0.085 0.915 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.194 -27.025 -4.848 27.483 hybrid contribution -0.203 1.797 1.957 2.665 sum 0.991 -25.228 -2.891 25.413 Atomic orbital electron populations 1.69659 1.06796 1.29349 1.50301 1.26034 0.96556 1.02408 0.96322 0.85002 0.77774 0.76703 0.78949 1.19624 1.19529 1.19807 1.19618 0.92683 0.84075 1.49974 0.90358 1.41943 1.09339 1.04755 1.65104 1.20935 0.88277 0.86218 0.82096 1.90488 1.15903 1.87987 1.56638 1.21574 0.94116 0.88098 1.02954 1.60244 1.18465 1.00555 1.50908 1.21766 0.97456 0.88251 0.94395 1.22645 1.00717 0.97264 0.98986 1.21494 0.94259 0.86968 0.97943 1.48171 1.51996 1.15062 1.17764 1.20365 0.80107 0.82840 0.85488 1.90720 1.55645 1.78901 1.21350 1.22540 0.91548 0.99412 1.04314 0.79458 1.23272 0.96719 0.94879 1.00650 1.22066 0.93630 0.97862 1.02103 0.78892 1.23027 0.73329 0.82112 0.87529 1.90745 1.52293 1.79723 1.21428 1.84491 1.75735 1.24157 1.47001 1.22056 1.00144 0.97823 0.81189 1.21860 0.98395 0.92732 1.02687 0.91304 0.76977 0.87518 0.91947 0.84058 0.89060 0.90785 0.92940 0.89222 0.91482 0.90189 0.82047 0.71702 0.86713 0.88794 0.91514 0.89275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.38 13.05 21.66 0.28 -49.10 16 2 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 3 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 7 C -0.33 -18.86 9.68 84.04 0.81 -18.05 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -29.11 5.29 -306.99 -1.62 -30.74 16 10 C 0.44 20.34 7.82 87.66 0.69 21.03 16 11 O -0.62 -34.03 15.78 -3.05 -0.05 -34.08 16 12 C 0.06 2.09 5.96 85.56 0.51 2.60 16 13 N -0.67 -19.29 5.87 -494.91 -2.91 -22.20 16 14 C 0.09 1.79 2.43 45.05 0.11 1.90 16 15 C -0.16 -3.13 5.36 30.78 0.16 -2.97 16 16 C 0.12 2.20 6.42 86.36 0.55 2.76 16 17 N -0.60 -9.95 2.97 -818.89 -2.43 -12.38 16 18 C 0.52 10.63 6.45 87.66 0.57 11.19 16 19 O -0.59 -17.99 15.80 -3.05 -0.05 -18.03 16 20 C -0.16 -1.67 4.43 -11.54 -0.05 -1.72 16 21 H 0.19 0.28 7.67 -2.39 -0.02 0.26 16 22 C -0.12 -1.35 9.55 30.59 0.29 -1.06 16 23 C -0.14 -1.47 6.29 -11.54 -0.07 -1.54 16 24 H 0.19 0.39 8.14 -2.39 -0.02 0.37 16 25 C 0.50 9.74 7.04 71.24 0.50 10.24 16 26 O -0.55 -15.92 17.28 21.93 0.38 -15.54 16 27 O -0.50 -8.05 12.47 -51.35 -0.64 -8.69 16 28 C 0.11 1.13 6.34 86.36 0.55 1.68 16 29 C -0.12 -1.85 5.69 30.67 0.17 -1.67 16 30 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 31 H 0.40 19.03 7.90 -92.70 -0.73 18.30 16 32 H 0.11 3.04 8.06 -2.38 -0.02 3.02 16 33 H 0.06 1.79 7.42 -2.39 -0.02 1.78 16 34 H 0.34 10.81 8.18 -89.70 -0.73 10.08 16 35 H 0.09 1.60 7.80 -2.39 -0.02 1.58 16 36 H 0.07 1.52 7.43 -2.39 -0.02 1.50 16 37 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 1.61 7.00 -2.39 -0.02 1.59 16 40 H 0.08 1.63 7.50 -2.39 -0.02 1.61 16 41 H 0.16 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.42 5.06 9.10 -74.06 -0.67 4.38 16 43 H 0.11 0.60 6.05 -2.38 -0.01 0.59 16 44 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.07 1.22 7.16 -2.39 -0.02 1.20 16 46 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -83.86 383.93 -0.83 -84.69 By element: Atomic # 1 Polarization: 38.22 SS G_CDS: -1.08 Total: 37.13 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: 5.26 Total: 24.16 kcal Atomic # 7 Polarization: -107.73 SS G_CDS: -6.68 Total: -114.42 kcal Atomic # 8 Polarization: -75.99 SS G_CDS: -0.36 Total: -76.34 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -83.86 -0.83 -84.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601074815.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.621 kcal (2) G-P(sol) polarization free energy of solvation -83.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds