Wall clock time and date at job start Sat Apr 11 2020 05:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47283 * 2 1 4 4 C 1.50702 * 109.46749 * 239.99717 * 2 1 3 5 5 H 1.08007 * 119.99603 * 239.63136 * 4 2 1 6 6 C 1.37875 * 120.00249 * 59.63854 * 4 2 1 7 7 N 1.31509 * 120.00089 * 194.08488 * 6 4 2 8 8 Si 1.86802 * 119.99829 * 14.08403 * 6 4 2 9 9 H 1.48501 * 109.46826 * 84.56649 * 8 6 4 10 10 H 1.48497 * 109.47164 * 204.56614 * 8 6 4 11 11 H 1.48498 * 109.46973 * 324.56681 * 8 6 4 12 12 C 1.53002 * 109.46852 * 119.99815 * 2 1 3 13 13 N 1.46494 * 109.47125 * 299.99799 * 12 2 1 14 14 C 1.38357 * 119.99863 * 180.02562 * 13 12 2 15 15 N 1.31618 * 119.28016 * 5.36029 * 14 13 12 16 16 C 1.33783 * 121.67735 * 179.97438 * 15 14 13 17 17 N 1.33713 * 120.56048 * 180.02562 * 16 15 14 18 18 C 1.31204 * 121.47126 * 180.02562 * 17 16 15 19 19 C 1.39136 * 121.81616 * 0.02562 * 18 17 16 20 20 C 1.36748 * 119.79804 * 359.97438 * 19 18 17 21 21 C 1.40589 * 118.15331 * 0.02562 * 20 19 18 22 22 C 1.40696 * 121.23664 * 179.97438 * 21 20 19 23 23 C 1.38368 * 118.07352 * 180.02562 * 22 21 20 24 24 C 1.48342 * 120.31554 * 179.97438 * 23 22 21 25 25 N 1.34078 * 126.68029 * 173.29777 * 24 23 22 26 26 N 1.28988 * 107.26687 * 179.87011 * 25 24 23 27 27 N 1.28725 * 108.95048 * 0.39336 * 26 25 24 28 28 H 0.97009 * 125.33249 * 179.76492 * 27 26 25 29 29 N 1.28865 * 109.33467 * 359.74929 * 27 26 25 30 30 H 1.08998 * 109.47046 * 308.29483 * 1 2 3 31 31 H 1.08998 * 109.47488 * 68.29234 * 1 2 3 32 32 H 1.08997 * 109.47745 * 188.29298 * 1 2 3 33 33 H 1.09001 * 109.47116 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47199 * 299.99418 * 3 2 1 35 35 H 1.08998 * 109.47642 * 60.00150 * 3 2 1 36 36 H 0.96996 * 120.00435 * 179.97438 * 7 6 4 37 37 H 1.09005 * 109.47116 * 179.97438 * 12 2 1 38 38 H 1.09005 * 109.47506 * 60.00250 * 12 2 1 39 39 H 0.96997 * 120.00399 * 0.02562 * 13 12 2 40 40 H 1.08008 * 119.08883 * 180.02562 * 18 17 16 41 41 H 1.07997 * 120.09801 * 179.97438 * 19 18 17 42 42 H 1.07998 * 120.92428 * 180.02562 * 20 19 18 43 43 H 1.08000 * 120.96018 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6580 -1.5852 -1.1313 6 6 1.6930 -0.2439 -2.4827 7 7 1.8877 -0.9998 -3.5411 8 14 0.9566 1.4620 -2.6760 9 1 2.0476 2.4673 -2.7430 10 1 0.1556 1.5167 -3.9251 11 1 0.0815 1.7579 -1.5133 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8862 -0.5029 3.7020 15 7 2.7290 -1.5083 3.8084 16 6 3.0862 -2.0026 4.9991 17 7 3.9447 -3.0244 5.0813 18 6 4.3069 -3.5234 6.2394 19 6 3.8186 -3.0187 7.4405 20 6 2.9367 -1.9736 7.4301 21 6 2.5520 -1.4427 6.1864 22 6 1.6482 -0.3679 6.1001 23 6 1.3144 0.1027 4.8424 24 6 0.3658 1.2335 4.6935 25 7 0.0503 1.8697 3.5563 26 7 -0.8081 2.7849 3.8551 27 7 -1.0319 2.7504 5.1223 28 1 -1.6367 3.3385 5.6014 29 7 -0.3271 1.8122 5.6546 30 1 -0.3633 0.6368 0.8065 31 1 -0.3634 0.3801 -0.9547 32 1 -0.3634 -1.0168 0.1482 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6488 -0.6717 -4.4221 37 1 3.1299 -0.7217 1.2491 38 1 1.6766 -1.7490 1.2494 39 1 0.9937 0.7579 2.3564 40 1 5.0032 -4.3488 6.2609 41 1 4.1351 -3.4510 8.3782 42 1 2.5466 -1.5674 8.3516 43 1 1.2266 0.0763 6.9896 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603136038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:59 Heat of formation + Delta-G solvation = 225.464622 kcal Electronic energy + Delta-G solvation = -29114.275325 eV Core-core repulsion = 25199.036841 eV Total energy + Delta-G solvation = -3915.238484 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.70996 -41.04874 -38.62433 -36.83298 -34.76271 -34.46395 -33.71118 -33.14916 -31.57517 -30.75791 -29.56726 -26.38775 -26.21972 -25.31488 -24.85728 -24.63424 -23.23681 -22.70328 -22.15602 -19.70224 -19.34383 -18.71616 -17.40541 -17.39243 -16.98322 -16.10132 -15.89240 -15.19685 -15.12528 -15.07974 -14.80594 -14.40807 -13.85548 -13.82405 -13.50223 -13.18797 -12.84026 -12.74811 -12.62043 -12.44361 -12.14763 -12.00393 -11.93182 -11.74758 -11.56613 -11.36954 -11.10001 -10.75868 -10.36724 -10.25652 -10.12814 -10.07806 -9.94106 -9.47724 -9.03014 -8.85378 -8.81158 -8.56885 -8.36018 -7.48791 -6.05436 -4.01750 0.00709 0.73994 0.89493 1.62915 1.97585 2.18899 2.97906 3.19877 3.33474 3.42411 3.46291 3.57878 3.86625 4.07377 4.23836 4.44453 4.45610 4.57737 4.70317 4.78886 4.94628 5.06436 5.21227 5.26086 5.31028 5.52999 5.61234 5.73302 5.91452 6.01427 6.05780 6.11150 6.18827 6.22731 6.49206 6.53368 6.62477 6.70632 6.74519 6.84333 7.00966 7.31796 7.39412 7.49455 7.55121 7.82658 7.85114 8.06570 8.52118 8.61791 9.00666 9.59299 11.07590 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.004003 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.133199 B = 6993.678277 C = 9326.813919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.029 3.971 3 C -0.147 4.147 4 C -0.509 4.509 5 H 0.078 0.922 6 C 0.076 3.924 7 N -0.892 5.892 8 Si 0.877 3.123 9 H -0.286 1.286 10 H -0.306 1.306 11 H -0.243 1.243 12 C 0.143 3.857 13 N -0.682 5.682 14 C 0.476 3.524 15 N -0.535 5.535 16 C 0.385 3.615 17 N -0.483 5.483 18 C 0.177 3.823 19 C -0.220 4.220 20 C -0.015 4.015 21 C -0.222 4.222 22 C 0.039 3.961 23 C -0.128 4.128 24 C 0.236 3.764 25 N -0.279 5.279 26 N -0.034 5.034 27 N -0.225 5.225 28 H 0.476 0.524 29 N -0.298 5.298 30 H 0.025 0.975 31 H 0.058 0.942 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.040 0.960 35 H 0.032 0.968 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.423 0.577 40 H 0.162 0.838 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.441 4.317 26.968 27.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.027 3.973 3 C -0.204 4.204 4 C -0.547 4.547 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.709 3.291 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.169 1.169 12 C 0.021 3.979 13 N -0.317 5.317 14 C 0.219 3.781 15 N -0.259 5.259 16 C 0.142 3.858 17 N -0.193 5.193 18 C 0.001 3.999 19 C -0.242 4.242 20 C -0.041 4.041 21 C -0.230 4.230 22 C 0.010 3.990 23 C -0.138 4.138 24 C -0.044 4.044 25 N -0.152 5.152 26 N -0.029 5.029 27 N -0.071 5.071 28 H 0.331 0.669 29 N -0.150 5.150 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.270 0.730 40 H 0.179 0.821 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.133 4.068 24.557 25.089 hybrid contribution -1.376 2.015 1.730 2.991 sum -4.509 6.083 26.288 27.356 Atomic orbital electron populations 1.22354 0.97910 0.99859 1.00202 1.18725 0.92525 0.92333 0.93688 1.22314 1.01006 0.98352 0.98722 1.20720 1.32564 1.13499 0.87922 0.90417 1.24936 0.94751 0.97079 0.95816 1.69953 1.48197 1.35882 0.98913 0.87455 0.79617 0.85672 0.76315 1.21345 1.23420 1.16923 1.21651 0.99082 0.95688 0.81502 1.46002 1.51774 1.31630 1.02294 1.18310 0.86679 0.87208 0.85856 1.67222 1.18710 1.14948 1.24971 1.19055 0.90001 0.89992 0.86764 1.67705 1.13067 1.10355 1.28208 1.23054 0.94081 0.95896 0.86873 1.21750 1.02123 1.00265 1.00024 1.21333 0.93187 0.93360 0.96242 1.19293 1.05416 1.02155 0.96111 1.21474 0.90460 0.90962 0.96105 1.17731 1.03121 0.98336 0.94573 1.23353 0.98026 0.97763 0.85218 1.75544 1.10500 1.04977 1.24217 1.78956 1.11122 1.15818 0.96977 1.47685 1.30386 1.23518 1.05555 0.66922 1.74883 1.09872 1.04179 1.26030 0.95570 0.92368 0.93593 0.92907 0.94140 0.94881 0.92677 0.91314 0.91538 0.73009 0.82086 0.84545 0.84596 0.83289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 7.53 37.16 0.28 -2.98 16 2 C 0.03 0.67 0.50 -155.67 -0.08 0.59 16 3 C -0.15 -3.26 7.60 37.15 0.28 -2.98 16 4 C -0.51 -14.20 8.62 -34.44 -0.30 -14.49 16 5 H 0.08 2.36 7.99 -52.48 -0.42 1.94 16 6 C 0.08 2.20 5.33 -17.82 -0.09 2.10 16 7 N -0.89 -27.37 13.96 55.43 0.77 -26.59 16 8 Si 0.88 21.89 22.78 -169.99 -3.87 18.01 16 9 H -0.29 -7.11 7.09 56.52 0.40 -6.71 16 10 H -0.31 -7.74 7.11 56.52 0.40 -7.34 16 11 H -0.24 -5.63 4.59 56.52 0.26 -5.37 16 12 C 0.14 3.08 4.48 -4.04 -0.02 3.06 16 13 N -0.68 -12.84 5.05 -60.20 -0.30 -13.14 16 14 C 0.48 8.33 7.48 -155.51 -1.16 7.17 16 15 N -0.54 -10.04 9.56 -11.65 -0.11 -10.15 16 16 C 0.39 6.29 7.61 -157.74 -1.20 5.09 16 17 N -0.48 -7.52 10.43 -12.61 -0.13 -7.65 16 18 C 0.18 1.86 11.14 -17.49 -0.19 1.66 16 19 C -0.22 -1.79 10.03 -39.79 -0.40 -2.19 16 20 C -0.01 -0.13 9.89 -39.23 -0.39 -0.52 16 21 C -0.22 -2.76 5.74 -106.75 -0.61 -3.38 16 22 C 0.04 0.44 9.56 -38.61 -0.37 0.07 16 23 C -0.13 -1.82 5.90 -104.56 -0.62 -2.44 16 24 C 0.24 3.19 7.88 -156.29 -1.23 1.95 16 25 N -0.28 -4.15 9.47 32.14 0.30 -3.85 16 26 N -0.03 -0.40 13.47 60.35 0.81 0.41 16 27 N -0.23 -1.85 7.90 60.35 0.48 -1.37 16 28 H 0.48 1.39 8.96 -340.36 -3.05 -1.66 16 29 N -0.30 -3.10 12.14 32.16 0.39 -2.71 16 30 H 0.03 0.52 7.10 -51.93 -0.37 0.15 16 31 H 0.06 1.35 4.02 -51.93 -0.21 1.15 16 32 H 0.04 1.00 8.13 -51.93 -0.42 0.58 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.04 0.93 2.46 -51.93 -0.13 0.81 16 35 H 0.03 0.65 6.86 -51.93 -0.36 0.30 16 36 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 37 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 38 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 39 H 0.42 7.73 2.75 -40.82 -0.11 7.62 16 40 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 41 H 0.14 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 43 H 0.15 1.19 7.94 -52.49 -0.42 0.77 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -35.60 345.96 -9.85 -45.45 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.30 Total: 3.65 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -6.10 Total: -7.27 kcal Atomic # 7 Polarization: -67.27 SS G_CDS: 2.21 Total: -65.06 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -3.87 Total: 18.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -35.60 -9.85 -45.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603136038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 270.914 kcal (2) G-P(sol) polarization free energy of solvation -35.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 235.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 225.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds