Wall clock time and date at job start Sat Apr 11 2020 05:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47283 * 2 1 4 4 C 1.50702 * 109.46749 * 239.99717 * 2 1 3 5 5 H 1.08007 * 119.99603 * 239.63136 * 4 2 1 6 6 C 1.37875 * 120.00249 * 59.63854 * 4 2 1 7 7 N 1.31509 * 120.00089 * 194.08488 * 6 4 2 8 8 Si 1.86802 * 119.99829 * 14.08403 * 6 4 2 9 9 H 1.48501 * 109.46826 * 84.56649 * 8 6 4 10 10 H 1.48497 * 109.47164 * 204.56614 * 8 6 4 11 11 H 1.48498 * 109.46973 * 324.56681 * 8 6 4 12 12 C 1.53002 * 109.46852 * 119.99815 * 2 1 3 13 13 N 1.46494 * 109.47125 * 299.99799 * 12 2 1 14 14 C 1.38357 * 119.99863 * 180.02562 * 13 12 2 15 15 N 1.31618 * 119.28016 * 5.36029 * 14 13 12 16 16 C 1.33783 * 121.67735 * 179.97438 * 15 14 13 17 17 N 1.33713 * 120.56048 * 180.02562 * 16 15 14 18 18 C 1.31204 * 121.47126 * 180.02562 * 17 16 15 19 19 C 1.39136 * 121.81616 * 0.02562 * 18 17 16 20 20 C 1.36748 * 119.79804 * 359.97438 * 19 18 17 21 21 C 1.40589 * 118.15331 * 0.02562 * 20 19 18 22 22 C 1.40696 * 121.23664 * 179.97438 * 21 20 19 23 23 C 1.38368 * 118.07352 * 180.02562 * 22 21 20 24 24 C 1.48342 * 120.31554 * 179.97438 * 23 22 21 25 25 N 1.34078 * 126.68029 * 173.29777 * 24 23 22 26 26 N 1.28988 * 107.26687 * 179.87011 * 25 24 23 27 27 N 1.28725 * 108.95048 * 0.39336 * 26 25 24 28 28 H 0.97009 * 125.33249 * 179.76492 * 27 26 25 29 29 N 1.28865 * 109.33467 * 359.74929 * 27 26 25 30 30 H 1.08998 * 109.47046 * 308.29483 * 1 2 3 31 31 H 1.08998 * 109.47488 * 68.29234 * 1 2 3 32 32 H 1.08997 * 109.47745 * 188.29298 * 1 2 3 33 33 H 1.09001 * 109.47116 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47199 * 299.99418 * 3 2 1 35 35 H 1.08998 * 109.47642 * 60.00150 * 3 2 1 36 36 H 0.96996 * 120.00435 * 179.97438 * 7 6 4 37 37 H 1.09005 * 109.47116 * 179.97438 * 12 2 1 38 38 H 1.09005 * 109.47506 * 60.00250 * 12 2 1 39 39 H 0.96997 * 120.00399 * 0.02562 * 13 12 2 40 40 H 1.08008 * 119.08883 * 180.02562 * 18 17 16 41 41 H 1.07997 * 120.09801 * 179.97438 * 19 18 17 42 42 H 1.07998 * 120.92428 * 180.02562 * 20 19 18 43 43 H 1.08000 * 120.96018 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6580 -1.5852 -1.1313 6 6 1.6930 -0.2439 -2.4827 7 7 1.8877 -0.9998 -3.5411 8 14 0.9566 1.4620 -2.6760 9 1 2.0476 2.4673 -2.7430 10 1 0.1556 1.5167 -3.9251 11 1 0.0815 1.7579 -1.5133 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8862 -0.5029 3.7020 15 7 2.7290 -1.5083 3.8084 16 6 3.0862 -2.0026 4.9991 17 7 3.9447 -3.0244 5.0813 18 6 4.3069 -3.5234 6.2394 19 6 3.8186 -3.0187 7.4405 20 6 2.9367 -1.9736 7.4301 21 6 2.5520 -1.4427 6.1864 22 6 1.6482 -0.3679 6.1001 23 6 1.3144 0.1027 4.8424 24 6 0.3658 1.2335 4.6935 25 7 0.0503 1.8697 3.5563 26 7 -0.8081 2.7849 3.8551 27 7 -1.0319 2.7504 5.1223 28 1 -1.6367 3.3385 5.6014 29 7 -0.3271 1.8122 5.6546 30 1 -0.3633 0.6368 0.8065 31 1 -0.3634 0.3801 -0.9547 32 1 -0.3634 -1.0168 0.1482 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9562 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6488 -0.6717 -4.4221 37 1 3.1299 -0.7217 1.2491 38 1 1.6766 -1.7490 1.2494 39 1 0.9937 0.7579 2.3564 40 1 5.0032 -4.3488 6.2609 41 1 4.1351 -3.4510 8.3782 42 1 2.5466 -1.5674 8.3516 43 1 1.2266 0.0763 6.9896 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603136038.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:58 Heat of formation + Delta-G solvation = 198.898772 kcal Electronic energy + Delta-G solvation = -29115.427307 eV Core-core repulsion = 25199.036841 eV Total energy + Delta-G solvation = -3916.390466 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.55911 -42.04571 -39.82938 -38.37907 -35.68012 -35.61882 -34.92181 -34.15714 -33.53607 -31.68709 -30.68550 -28.06268 -27.73829 -26.97134 -26.28514 -25.56839 -24.36224 -23.60268 -23.21066 -20.91786 -20.51229 -20.02847 -18.54267 -18.23170 -18.02804 -17.89368 -17.39388 -16.59916 -16.28664 -16.15449 -15.95205 -15.40623 -15.35560 -15.06428 -14.84988 -14.53758 -14.37631 -14.01585 -13.93641 -13.89274 -13.80104 -13.38637 -13.04621 -12.86332 -12.53231 -12.40880 -12.32495 -12.27740 -12.08330 -11.94842 -11.77862 -11.62949 -11.34266 -11.06449 -10.70576 -10.59423 -10.40312 -9.87098 -9.74629 -8.72371 -8.30115 -6.30822 -0.85114 -0.21789 0.04926 0.74816 1.24230 1.35307 1.36014 1.37157 1.48462 2.03356 2.09512 2.34352 2.56553 2.95580 3.03577 3.06448 3.23349 3.59133 3.68447 3.89385 4.03381 4.08770 4.12312 4.18474 4.32987 4.36228 4.40346 4.54882 4.66129 4.70056 4.74554 4.84347 4.87171 4.91136 4.96312 5.03942 5.15673 5.23659 5.26959 5.46034 5.58740 5.65282 5.72066 5.75645 6.11875 6.29079 6.33766 6.71660 6.87150 7.08056 7.33429 7.49386 8.86975 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.010956 B = 0.004003 C = 0.003001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2555.133199 B = 6993.678277 C = 9326.813919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.028 3.972 3 C -0.142 4.142 4 C -0.514 4.514 5 H 0.031 0.969 6 C 0.022 3.978 7 N -0.943 5.943 8 Si 0.935 3.065 9 H -0.280 1.280 10 H -0.308 1.308 11 H -0.209 1.209 12 C 0.168 3.832 13 N -0.693 5.693 14 C 0.459 3.541 15 N -0.584 5.584 16 C 0.347 3.653 17 N -0.542 5.542 18 C 0.172 3.828 19 C -0.202 4.202 20 C -0.006 4.006 21 C -0.225 4.225 22 C 0.062 3.938 23 C -0.142 4.142 24 C 0.224 3.776 25 N -0.319 5.319 26 N -0.044 5.044 27 N -0.190 5.190 28 H 0.498 0.502 29 N -0.277 5.277 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.039 0.961 33 H 0.047 0.953 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.265 0.735 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.425 0.575 40 H 0.190 0.810 41 H 0.184 0.816 42 H 0.187 0.813 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.850 6.301 32.377 33.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.027 3.973 3 C -0.198 4.198 4 C -0.552 4.552 5 H 0.049 0.951 6 C -0.175 4.175 7 N -0.582 5.582 8 Si 0.764 3.236 9 H -0.207 1.207 10 H -0.237 1.237 11 H -0.133 1.133 12 C 0.043 3.957 13 N -0.332 5.332 14 C 0.205 3.795 15 N -0.309 5.309 16 C 0.106 3.894 17 N -0.254 5.254 18 C -0.001 4.001 19 C -0.223 4.223 20 C -0.032 4.032 21 C -0.232 4.232 22 C 0.034 3.966 23 C -0.152 4.152 24 C -0.056 4.056 25 N -0.191 5.191 26 N -0.039 5.039 27 N -0.042 5.042 28 H 0.358 0.642 29 N -0.130 5.130 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.273 0.727 40 H 0.207 0.793 41 H 0.202 0.798 42 H 0.204 0.796 43 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -4.533 6.041 30.067 31.001 hybrid contribution -0.799 1.165 0.373 1.461 sum -5.333 7.206 30.440 31.732 Atomic orbital electron populations 1.22229 0.96563 1.00169 1.00636 1.18646 0.93450 0.92970 0.92269 1.22209 1.00788 0.97141 0.99701 1.20963 1.31583 1.12383 0.90290 0.95055 1.25759 0.95481 1.01076 0.95223 1.70097 1.50401 1.38112 0.99588 0.86494 0.79520 0.80392 0.77187 1.20726 1.23743 1.13337 1.21006 0.97364 0.94547 0.82747 1.45628 1.53468 1.32254 1.01870 1.18493 0.87227 0.87644 0.86172 1.67028 1.19902 1.16148 1.27777 1.19334 0.91476 0.91180 0.87449 1.67635 1.14771 1.11705 1.31291 1.23755 0.93701 0.95955 0.86723 1.22264 1.00251 0.99085 1.00665 1.21909 0.92318 0.92743 0.96248 1.19542 1.05114 1.02210 0.96337 1.21911 0.88745 0.89566 0.96336 1.17696 1.03990 0.99171 0.94349 1.23219 0.98706 0.98072 0.85558 1.75459 1.11897 1.06203 1.25541 1.78892 1.11146 1.15627 0.98204 1.47764 1.29135 1.22495 1.04798 0.64199 1.74832 1.09251 1.03990 1.24936 0.92938 0.93060 0.94204 0.93431 0.94473 0.92213 0.92592 0.93797 0.94174 0.72678 0.79308 0.79824 0.79598 0.78908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.21 7.53 71.98 0.54 -5.67 16 2 C 0.03 1.35 0.50 -52.93 -0.03 1.32 16 3 C -0.14 -6.27 7.60 71.98 0.55 -5.72 16 4 C -0.51 -30.46 8.62 25.60 0.22 -30.24 16 5 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 6 C 0.02 1.33 5.33 84.65 0.45 1.78 16 7 N -0.94 -60.69 13.96 21.45 0.30 -60.39 16 8 Si 0.93 45.62 22.78 68.60 1.56 47.19 16 9 H -0.28 -13.37 7.09 99.48 0.71 -12.66 16 10 H -0.31 -15.14 7.11 99.48 0.71 -14.43 16 11 H -0.21 -9.07 4.59 99.48 0.46 -8.61 16 12 C 0.17 7.77 4.48 86.38 0.39 8.16 16 13 N -0.69 -27.20 5.05 -344.36 -1.74 -28.94 16 14 C 0.46 16.70 7.48 134.03 1.00 17.70 16 15 N -0.58 -23.38 9.56 -190.78 -1.82 -25.21 16 16 C 0.35 11.56 7.61 135.01 1.03 12.58 16 17 N -0.54 -17.24 10.43 -193.79 -2.02 -19.26 16 18 C 0.17 3.28 11.14 85.00 0.95 4.22 16 19 C -0.20 -2.32 10.03 22.14 0.22 -2.10 16 20 C -0.01 -0.08 9.89 22.49 0.22 0.15 16 21 C -0.22 -5.06 5.74 -21.24 -0.12 -5.18 16 22 C 0.06 1.23 9.56 22.90 0.22 1.45 16 23 C -0.14 -3.91 5.90 -19.82 -0.12 -4.03 16 24 C 0.22 5.62 7.88 137.32 1.08 6.70 16 25 N -0.32 -9.00 9.47 -52.23 -0.49 -9.49 16 26 N -0.04 -0.95 13.47 37.02 0.50 -0.45 16 27 N -0.19 -2.47 7.90 37.02 0.29 -2.18 16 28 H 0.50 0.94 8.96 -347.52 -3.12 -2.17 16 29 N -0.28 -4.80 12.14 -52.18 -0.63 -5.43 16 30 H 0.05 2.06 7.10 -2.39 -0.02 2.05 16 31 H 0.05 2.34 4.02 -2.39 -0.01 2.33 16 32 H 0.04 1.78 8.13 -2.39 -0.02 1.77 16 33 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.66 2.46 -2.39 -0.01 1.66 16 35 H 0.06 2.32 6.86 -2.39 -0.02 2.31 16 36 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 37 H 0.04 2.18 8.14 -2.38 -0.02 2.16 16 38 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 39 H 0.42 15.69 2.75 -92.71 -0.25 15.43 16 40 H 0.19 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.18 0.44 8.06 -2.91 -0.02 0.41 16 42 H 0.19 0.50 8.06 -2.91 -0.02 0.48 16 43 H 0.19 1.99 7.94 -2.91 -0.02 1.97 16 Total: -1.00 -86.82 345.96 0.03 -86.79 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -2.51 Total: 16.25 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 6.60 Total: 1.13 kcal Atomic # 7 Polarization: -145.74 SS G_CDS: -5.62 Total: -151.36 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.56 Total: 47.19 kcal Total: -86.82 0.03 -86.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603136038.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 285.688 kcal (2) G-P(sol) polarization free energy of solvation -86.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 198.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 198.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds