Wall clock time and date at job start Sat Apr 11 2020 05:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46946 * 2 1 4 4 C 1.52996 * 109.47193 * 120.00038 * 2 1 3 5 5 N 1.46501 * 109.47264 * 174.99611 * 4 2 1 6 6 N 1.40119 * 126.16138 * 95.27652 * 5 4 2 7 7 H 0.97000 * 125.91367 * 0.05658 * 6 5 4 8 8 C 1.36600 * 108.18039 * 180.16497 * 6 5 4 9 9 C 1.50704 * 125.77584 * 179.84199 * 8 6 5 10 10 C 1.50697 * 109.47187 * 274.72154 * 9 8 6 11 11 O 1.21295 * 120.00137 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00230 * 179.72211 * 10 9 8 13 13 C 1.37102 * 119.99527 * 0.27882 * 12 10 9 14 14 H 1.07999 * 120.00098 * 8.07852 * 13 12 10 15 15 C 1.38953 * 119.99834 * 188.07947 * 13 12 10 16 16 N 1.31411 * 119.99898 * 26.13052 * 15 13 12 17 17 Si 1.86793 * 119.99885 * 206.13077 * 15 13 12 18 18 H 1.48504 * 109.47206 * 84.98876 * 17 15 13 19 19 H 1.48503 * 109.47237 * 204.98501 * 17 15 13 20 20 H 1.48498 * 109.47412 * 324.98877 * 17 15 13 21 21 C 1.46492 * 120.00475 * 180.27283 * 12 10 9 22 22 C 1.53005 * 109.47022 * 83.24729 * 21 12 10 23 23 C 1.50699 * 109.47389 * 179.97438 * 22 21 12 24 24 O 1.20825 * 119.99500 * 0.02562 * 23 22 21 25 25 O 1.34220 * 120.00176 * 180.02562 * 23 22 21 26 26 C 1.34827 * 108.44887 * 359.58647 * 8 6 5 27 27 C 1.34870 * 126.16716 * 274.98278 * 5 4 2 28 28 O 1.21779 * 126.19443 * 359.97438 * 27 5 4 29 29 H 1.08997 * 109.46821 * 299.99953 * 1 2 3 30 30 H 1.08997 * 109.46949 * 59.99729 * 1 2 3 31 31 H 1.08998 * 109.46687 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47047 * 240.00550 * 2 1 3 33 33 H 1.08992 * 109.47079 * 300.00035 * 3 2 1 34 34 H 1.08996 * 109.46799 * 60.00398 * 3 2 1 35 35 H 1.09002 * 109.46448 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47097 * 55.00523 * 4 2 1 37 37 H 1.08993 * 109.47761 * 295.00228 * 4 2 1 38 38 H 1.09003 * 109.47151 * 154.72019 * 9 8 6 39 39 H 1.09002 * 109.46871 * 34.71978 * 9 8 6 40 40 H 0.97000 * 119.99924 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.47642 * 203.24645 * 21 12 10 42 42 H 1.08998 * 109.47300 * 323.25227 * 21 12 10 43 43 H 1.08997 * 109.46843 * 300.00405 * 22 21 12 44 44 H 1.09007 * 109.46530 * 60.00147 * 22 21 12 45 45 H 0.96705 * 117.00217 * 180.02562 * 25 23 22 46 46 H 1.08006 * 125.95735 * 180.28316 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8265 1.1905 6 7 4.4169 0.0530 1.7817 7 1 4.1950 0.8399 2.3036 8 6 5.6772 -0.3882 1.4938 9 6 6.9616 0.2665 1.9329 10 6 7.3330 1.3506 0.9542 11 8 6.6247 1.5697 -0.0058 12 7 8.4495 2.0801 1.1482 13 6 9.2504 1.8320 2.2330 14 1 9.0613 0.9722 2.8585 15 6 10.3054 2.6870 2.5276 16 7 10.2590 3.9436 2.1461 17 14 11.7896 2.0500 3.4661 18 1 12.7461 1.4273 2.5160 19 1 12.4530 3.1781 4.1680 20 1 11.3499 1.0383 4.4602 21 6 8.8074 3.1379 0.2001 22 6 8.0422 4.4160 0.5492 23 6 8.4108 5.5044 -0.4257 24 8 9.2038 5.2807 -1.3094 25 8 7.8582 6.7223 -0.3123 26 6 5.5776 -1.5117 0.7551 27 6 4.2040 -1.7903 0.5624 28 8 3.7411 -2.7304 -0.0580 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6055 -1.7198 1.2951 37 1 1.7518 -0.1584 2.1369 38 1 7.7560 -0.4791 1.9680 39 1 6.8275 0.7015 2.9233 40 1 10.9957 4.5404 2.3514 41 1 9.8790 3.3292 0.2566 42 1 8.5472 2.8233 -0.8105 43 1 6.9706 4.2247 0.4928 44 1 8.3025 4.7306 1.5600 45 1 8.1253 7.3878 -0.9611 46 1 6.4026 -2.0972 0.3768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603852733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:02 Heat of formation + Delta-G solvation = -85.978802 kcal Electronic energy + Delta-G solvation = -30294.278236 eV Core-core repulsion = 25993.640129 eV Total energy + Delta-G solvation = -4300.638106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29720 -39.69367 -38.73577 -36.69315 -36.50288 -35.68527 -35.14680 -32.66663 -31.84049 -30.95905 -29.59214 -28.97590 -27.26957 -25.68809 -25.30483 -23.75547 -21.11097 -20.95329 -20.18629 -19.93343 -19.31429 -18.04071 -17.59507 -16.92611 -16.42689 -15.70489 -15.65107 -15.48174 -15.25481 -15.13530 -14.67775 -14.47149 -14.27056 -13.87873 -13.83129 -13.32635 -13.05307 -12.96021 -12.80506 -12.47184 -12.43915 -12.38012 -12.15292 -11.94115 -11.80156 -11.65992 -11.37386 -11.35007 -11.09031 -11.05903 -10.97662 -10.87200 -10.67156 -10.57658 -10.06943 -9.93188 -9.43147 -9.20651 -9.01226 -8.59999 -8.11332 -7.53508 -6.68995 -4.11914 1.85092 2.04741 2.87697 2.98090 3.11675 3.12867 3.48799 3.64695 3.75376 3.92165 4.03023 4.57464 4.60082 4.69309 4.79077 4.92317 4.97227 5.11706 5.32140 5.46953 5.51028 5.54410 5.69585 5.76156 5.81449 5.83188 5.84016 5.95114 5.97460 6.12202 6.17182 6.20927 6.26692 6.29475 6.38906 6.53007 6.71450 6.90326 7.03195 7.12577 7.28053 7.44554 7.48577 7.78398 8.12592 8.47526 8.64515 8.81473 9.22520 9.63566 10.33174 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.003401 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.679467 B = 8230.266764 C =10029.874393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.151 4.151 4 C 0.141 3.859 5 N -0.417 5.417 6 N -0.490 5.490 7 H 0.436 0.564 8 C 0.233 3.767 9 C -0.074 4.074 10 C 0.453 3.547 11 O -0.596 6.596 12 N -0.434 5.434 13 C -0.349 4.349 14 H 0.106 0.894 15 C 0.044 3.956 16 N -0.855 5.855 17 Si 0.918 3.082 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.269 1.269 21 C 0.152 3.848 22 C -0.109 4.109 23 C 0.490 3.510 24 O -0.527 6.527 25 O -0.526 6.526 26 C -0.351 4.351 27 C 0.537 3.463 28 O -0.569 6.569 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.118 0.882 39 H 0.103 0.897 40 H 0.274 0.726 41 H 0.107 0.893 42 H 0.051 0.949 43 H 0.082 0.918 44 H 0.135 0.865 45 H 0.397 0.603 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.282 0.274 3.995 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.138 4.138 3 C -0.208 4.208 4 C 0.020 3.980 5 N -0.240 5.240 6 N -0.211 5.211 7 H 0.281 0.719 8 C 0.115 3.885 9 C -0.116 4.116 10 C 0.241 3.759 11 O -0.482 6.482 12 N -0.152 5.152 13 C -0.476 4.476 14 H 0.124 0.876 15 C -0.162 4.162 16 N -0.492 5.492 17 Si 0.745 3.255 18 H -0.200 1.200 19 H -0.210 1.210 20 H -0.193 1.193 21 C 0.028 3.972 22 C -0.148 4.148 23 C 0.334 3.666 24 O -0.416 6.416 25 O -0.337 6.337 26 C -0.382 4.382 27 C 0.336 3.664 28 O -0.450 6.450 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.114 0.886 37 H 0.100 0.900 38 H 0.136 0.864 39 H 0.121 0.879 40 H 0.085 0.915 41 H 0.125 0.875 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.153 0.847 45 H 0.254 0.746 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.937 -0.283 3.289 11.425 hybrid contribution 0.981 0.937 0.390 1.412 sum -9.956 0.654 3.679 10.634 Atomic orbital electron populations 1.21758 0.94208 1.01991 1.02093 1.21604 0.95998 0.97202 0.98988 1.21871 1.02370 0.94984 1.01564 1.21724 0.75259 1.02467 0.98522 1.48381 1.02067 1.22159 1.51351 1.43868 0.99819 1.25079 1.52323 0.71897 1.20471 0.84502 0.91839 0.91664 1.20392 0.91722 0.98932 1.00506 1.19626 0.82393 0.85909 0.87974 1.90627 1.52355 1.72485 1.32771 1.43737 1.19716 1.29212 1.22490 1.19698 1.09778 1.11187 1.06909 0.87625 1.25171 0.99401 0.94110 0.97514 1.69973 1.31728 1.02888 1.44631 0.86083 0.81486 0.78699 0.79281 1.20012 1.21006 1.19317 1.21000 1.01638 0.84253 0.90282 1.21774 1.01142 0.91630 1.00235 1.23901 0.76781 0.82043 0.83874 1.90641 1.33745 1.82009 1.35214 1.84602 1.67866 1.23208 1.58059 1.21561 0.97032 1.04236 1.15341 1.16973 0.87847 0.81534 0.80031 1.90800 1.77225 1.31491 1.45476 0.92586 0.92140 0.92367 0.90106 0.92461 0.93040 0.91595 0.88560 0.90025 0.86372 0.87896 0.91540 0.87476 0.93036 0.90016 0.84710 0.74565 0.82692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.19 37.16 0.34 -0.86 16 2 C -0.12 -1.33 3.13 -90.62 -0.28 -1.61 16 3 C -0.15 -1.75 9.08 37.16 0.34 -1.42 16 4 C 0.14 1.59 5.75 -4.04 -0.02 1.57 16 5 N -0.42 -6.13 3.14 -63.25 -0.20 -6.33 16 6 N -0.49 -6.69 6.73 33.67 0.23 -6.46 16 7 H 0.44 4.75 8.96 -182.58 -1.64 3.11 16 8 C 0.23 3.68 5.70 -81.68 -0.47 3.22 16 9 C -0.07 -1.16 4.62 -29.03 -0.13 -1.29 16 10 C 0.45 9.22 7.57 -10.99 -0.08 9.14 16 11 O -0.60 -13.81 15.73 5.54 0.09 -13.73 16 12 N -0.43 -9.37 2.64 -114.81 -0.30 -9.68 16 13 C -0.35 -7.42 9.25 -14.93 -0.14 -7.56 16 14 H 0.11 2.03 6.47 -52.49 -0.34 1.69 16 15 C 0.04 0.96 4.88 -17.47 -0.09 0.87 16 16 N -0.86 -19.19 8.73 55.50 0.48 -18.71 16 17 Si 0.92 17.27 29.63 -169.99 -5.04 12.23 16 18 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 19 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 21 C 0.15 3.40 3.81 -4.04 -0.02 3.38 16 22 C -0.11 -2.22 5.61 -27.88 -0.16 -2.38 16 23 C 0.49 9.47 8.33 36.01 0.30 9.77 16 24 O -0.53 -11.47 16.74 -18.75 -0.31 -11.79 16 25 O -0.53 -8.15 13.42 -39.23 -0.53 -8.67 16 26 C -0.35 -6.19 10.73 -39.56 -0.42 -6.61 16 27 C 0.54 9.97 7.95 -14.99 -0.12 9.85 16 28 O -0.57 -12.25 17.92 5.12 0.09 -12.16 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.97 7.23 -51.93 -0.38 0.59 16 36 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.12 1.70 7.80 -51.93 -0.40 1.30 16 39 H 0.10 1.39 8.01 -51.93 -0.42 0.97 16 40 H 0.27 5.98 8.31 -40.82 -0.34 5.64 16 41 H 0.11 2.59 5.77 -51.93 -0.30 2.29 16 42 H 0.05 1.22 7.59 -51.93 -0.39 0.82 16 43 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 44 H 0.14 2.87 6.42 -51.92 -0.33 2.54 16 45 H 0.40 4.19 9.10 45.56 0.41 4.60 16 46 H 0.16 2.62 8.06 -52.48 -0.42 2.20 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -31.15 388.58 -7.73 -38.88 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -7.15 Total: 14.49 kcal Atomic # 6 Polarization: 17.01 SS G_CDS: -0.95 Total: 16.06 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.21 Total: -41.18 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -0.66 Total: -46.34 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.04 Total: 12.23 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.15 -7.73 -38.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603852733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.096 kcal (2) G-P(sol) polarization free energy of solvation -31.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds