Wall clock time and date at job start Sat Apr 11 2020 05:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46946 * 2 1 4 4 C 1.52996 * 109.47193 * 120.00038 * 2 1 3 5 5 N 1.46501 * 109.47264 * 174.99611 * 4 2 1 6 6 N 1.40119 * 126.16138 * 95.27652 * 5 4 2 7 7 H 0.97000 * 125.91367 * 0.05658 * 6 5 4 8 8 C 1.36600 * 108.18039 * 180.16497 * 6 5 4 9 9 C 1.50704 * 125.77584 * 179.84199 * 8 6 5 10 10 C 1.50697 * 109.47187 * 274.72154 * 9 8 6 11 11 O 1.21295 * 120.00137 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00230 * 179.72211 * 10 9 8 13 13 C 1.37102 * 119.99527 * 0.27882 * 12 10 9 14 14 H 1.07999 * 120.00098 * 8.07852 * 13 12 10 15 15 C 1.38953 * 119.99834 * 188.07947 * 13 12 10 16 16 N 1.31411 * 119.99898 * 26.13052 * 15 13 12 17 17 Si 1.86793 * 119.99885 * 206.13077 * 15 13 12 18 18 H 1.48504 * 109.47206 * 84.98876 * 17 15 13 19 19 H 1.48503 * 109.47237 * 204.98501 * 17 15 13 20 20 H 1.48498 * 109.47412 * 324.98877 * 17 15 13 21 21 C 1.46492 * 120.00475 * 180.27283 * 12 10 9 22 22 C 1.53005 * 109.47022 * 83.24729 * 21 12 10 23 23 C 1.50699 * 109.47389 * 179.97438 * 22 21 12 24 24 O 1.20825 * 119.99500 * 0.02562 * 23 22 21 25 25 O 1.34220 * 120.00176 * 180.02562 * 23 22 21 26 26 C 1.34827 * 108.44887 * 359.58647 * 8 6 5 27 27 C 1.34870 * 126.16716 * 274.98278 * 5 4 2 28 28 O 1.21779 * 126.19443 * 359.97438 * 27 5 4 29 29 H 1.08997 * 109.46821 * 299.99953 * 1 2 3 30 30 H 1.08997 * 109.46949 * 59.99729 * 1 2 3 31 31 H 1.08998 * 109.46687 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47047 * 240.00550 * 2 1 3 33 33 H 1.08992 * 109.47079 * 300.00035 * 3 2 1 34 34 H 1.08996 * 109.46799 * 60.00398 * 3 2 1 35 35 H 1.09002 * 109.46448 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47097 * 55.00523 * 4 2 1 37 37 H 1.08993 * 109.47761 * 295.00228 * 4 2 1 38 38 H 1.09003 * 109.47151 * 154.72019 * 9 8 6 39 39 H 1.09002 * 109.46871 * 34.71978 * 9 8 6 40 40 H 0.97000 * 119.99924 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.47642 * 203.24645 * 21 12 10 42 42 H 1.08998 * 109.47300 * 323.25227 * 21 12 10 43 43 H 1.08997 * 109.46843 * 300.00405 * 22 21 12 44 44 H 1.09007 * 109.46530 * 60.00147 * 22 21 12 45 45 H 0.96705 * 117.00217 * 180.02562 * 25 23 22 46 46 H 1.08006 * 125.95735 * 180.28316 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.5001 -0.8265 1.1905 6 7 4.4169 0.0530 1.7817 7 1 4.1950 0.8399 2.3036 8 6 5.6772 -0.3882 1.4938 9 6 6.9616 0.2665 1.9329 10 6 7.3330 1.3506 0.9542 11 8 6.6247 1.5697 -0.0058 12 7 8.4495 2.0801 1.1482 13 6 9.2504 1.8320 2.2330 14 1 9.0613 0.9722 2.8585 15 6 10.3054 2.6870 2.5276 16 7 10.2590 3.9436 2.1461 17 14 11.7896 2.0500 3.4661 18 1 12.7461 1.4273 2.5160 19 1 12.4530 3.1781 4.1680 20 1 11.3499 1.0383 4.4602 21 6 8.8074 3.1379 0.2001 22 6 8.0422 4.4160 0.5492 23 6 8.4108 5.5044 -0.4257 24 8 9.2038 5.2807 -1.3094 25 8 7.8582 6.7223 -0.3123 26 6 5.5776 -1.5117 0.7551 27 6 4.2040 -1.7903 0.5624 28 8 3.7411 -2.7304 -0.0580 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5137 -0.8900 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1301 1.4425 0.0005 36 1 1.6055 -1.7198 1.2951 37 1 1.7518 -0.1584 2.1369 38 1 7.7560 -0.4791 1.9680 39 1 6.8275 0.7015 2.9233 40 1 10.9957 4.5404 2.3514 41 1 9.8790 3.3292 0.2566 42 1 8.5472 2.8233 -0.8105 43 1 6.9706 4.2247 0.4928 44 1 8.3025 4.7306 1.5600 45 1 8.1253 7.3878 -0.9611 46 1 6.4026 -2.0972 0.3768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603852733.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:01 Heat of formation + Delta-G solvation = -106.312580 kcal Electronic energy + Delta-G solvation = -30295.159975 eV Core-core repulsion = 25993.640129 eV Total energy + Delta-G solvation = -4301.519845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.58431 -41.24340 -40.33922 -38.11612 -37.51354 -37.15467 -36.77042 -33.93465 -33.50591 -32.51360 -30.89693 -30.26428 -28.09901 -26.98303 -26.81762 -25.29806 -22.40026 -22.21725 -21.64980 -21.07151 -20.88958 -19.39932 -19.00089 -18.41012 -18.01803 -17.25480 -16.94726 -16.77444 -16.70245 -16.39142 -16.06048 -15.90014 -15.73543 -15.35254 -14.88223 -14.57112 -14.50094 -14.39338 -14.06558 -13.98985 -13.70945 -13.41575 -13.33277 -13.19986 -13.14036 -12.91411 -12.84297 -12.60116 -12.48494 -12.37278 -12.23927 -12.04472 -11.97538 -11.79100 -11.76550 -11.54031 -10.89728 -10.84352 -10.48383 -10.01273 -9.80897 -8.86040 -8.32690 -5.79316 0.59595 0.82522 1.32081 1.48144 1.60820 1.66684 1.96890 2.19517 2.30742 2.38597 2.85723 3.06232 3.20192 3.64801 3.71793 3.80459 4.04760 4.15981 4.24657 4.28941 4.32829 4.43884 4.52136 4.58319 4.60797 4.66432 4.72362 4.77322 4.85572 4.88378 4.95758 4.99779 5.08671 5.17003 5.27841 5.29403 5.33151 5.35138 5.42084 5.58243 5.68538 5.78887 6.20620 6.45658 6.64379 7.08363 7.16641 7.29017 7.58919 8.00120 8.69744 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.011280 B = 0.003401 C = 0.002791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2481.679467 B = 8230.266764 C =10029.874393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.115 4.115 3 C -0.146 4.146 4 C 0.133 3.867 5 N -0.408 5.408 6 N -0.469 5.469 7 H 0.452 0.548 8 C 0.244 3.756 9 C -0.062 4.062 10 C 0.448 3.552 11 O -0.629 6.629 12 N -0.443 5.443 13 C -0.359 4.359 14 H 0.130 0.870 15 C 0.007 3.993 16 N -0.877 5.877 17 Si 0.976 3.024 18 H -0.287 1.287 19 H -0.292 1.292 20 H -0.251 1.251 21 C 0.158 3.842 22 C -0.098 4.098 23 C 0.497 3.503 24 O -0.557 6.557 25 O -0.512 6.512 26 C -0.379 4.379 27 C 0.517 3.483 28 O -0.613 6.613 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.098 0.902 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.135 0.865 40 H 0.271 0.729 41 H 0.087 0.913 42 H 0.028 0.972 43 H 0.083 0.917 44 H 0.129 0.871 45 H 0.423 0.577 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.436 1.012 6.353 13.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.135 4.135 3 C -0.203 4.203 4 C 0.014 3.986 5 N -0.228 5.228 6 N -0.191 5.191 7 H 0.301 0.699 8 C 0.123 3.877 9 C -0.103 4.103 10 C 0.238 3.762 11 O -0.518 6.518 12 N -0.161 5.161 13 C -0.485 4.485 14 H 0.147 0.853 15 C -0.197 4.197 16 N -0.515 5.515 17 Si 0.802 3.198 18 H -0.213 1.213 19 H -0.218 1.218 20 H -0.175 1.175 21 C 0.034 3.966 22 C -0.136 4.136 23 C 0.342 3.658 24 O -0.448 6.448 25 O -0.326 6.326 26 C -0.410 4.410 27 C 0.317 3.683 28 O -0.499 6.499 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.101 0.899 44 H 0.146 0.854 45 H 0.283 0.717 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -12.142 0.521 5.696 13.422 hybrid contribution 1.295 0.837 -0.379 1.588 sum -10.847 1.358 5.317 12.156 Atomic orbital electron populations 1.21713 0.91560 1.02722 1.03343 1.21546 0.98100 0.96445 0.97371 1.21829 1.00069 0.95484 1.02927 1.22109 0.72929 1.03424 1.00160 1.48438 1.03299 1.21201 1.49888 1.43924 0.99206 1.24853 1.51069 0.69932 1.20409 0.85312 0.91122 0.90907 1.20356 0.91893 0.97738 1.00331 1.20331 0.81489 0.86243 0.88150 1.90614 1.53263 1.73503 1.34402 1.43904 1.20389 1.29298 1.22486 1.20158 1.09738 1.11777 1.06800 0.85285 1.25851 1.01131 0.94197 0.98477 1.70054 1.31982 1.03665 1.45783 0.85182 0.78438 0.78055 0.78170 1.21349 1.21834 1.17486 1.20760 1.00669 0.85643 0.89569 1.21531 1.00710 0.91326 1.00076 1.23612 0.76255 0.82909 0.83045 1.90636 1.35099 1.82766 1.36306 1.84518 1.66924 1.22367 1.58756 1.21662 0.96955 1.05584 1.16786 1.17142 0.88595 0.82016 0.80578 1.90753 1.78010 1.33449 1.47677 0.90268 0.91940 0.91956 0.93890 0.92490 0.90346 0.94961 0.88363 0.86030 0.84609 0.84748 0.91922 0.89459 0.95403 0.89875 0.85366 0.71654 0.82942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 9.19 71.98 0.66 -1.32 16 2 C -0.11 -2.46 3.13 -10.79 -0.03 -2.50 16 3 C -0.15 -3.18 9.08 71.98 0.65 -2.53 16 4 C 0.13 2.74 5.75 86.38 0.50 3.24 16 5 N -0.41 -11.61 3.14 -472.14 -1.48 -13.09 16 6 N -0.47 -11.91 6.73 -47.38 -0.32 -12.22 16 7 H 0.45 8.46 8.96 -213.31 -1.91 6.55 16 8 C 0.24 7.35 5.70 41.03 0.23 7.58 16 9 C -0.06 -1.80 4.62 29.10 0.13 -1.67 16 10 C 0.45 17.87 7.57 87.66 0.66 18.53 16 11 O -0.63 -29.30 15.73 -3.08 -0.05 -29.35 16 12 N -0.44 -18.94 2.64 -635.55 -1.68 -20.62 16 13 C -0.36 -14.67 9.25 84.04 0.78 -13.89 16 14 H 0.13 4.55 6.47 -2.91 -0.02 4.54 16 15 C 0.01 0.30 4.88 84.93 0.41 0.72 16 16 N -0.88 -39.23 8.73 21.66 0.19 -39.04 16 17 Si 0.98 34.44 29.63 68.60 2.03 36.47 16 18 H -0.29 -10.65 7.11 99.48 0.71 -9.95 16 19 H -0.29 -10.60 7.11 99.48 0.71 -9.89 16 20 H -0.25 -8.12 7.11 99.48 0.71 -7.41 16 21 C 0.16 7.19 3.81 86.38 0.33 7.52 16 22 C -0.10 -3.98 5.61 29.85 0.17 -3.82 16 23 C 0.50 19.04 8.33 71.24 0.59 19.64 16 24 O -0.56 -24.42 16.74 21.97 0.37 -24.05 16 25 O -0.51 -14.98 13.42 -51.32 -0.69 -15.67 16 26 C -0.38 -13.45 10.73 22.28 0.24 -13.21 16 27 C 0.52 19.52 7.95 85.02 0.68 20.20 16 28 O -0.61 -27.48 17.92 -4.60 -0.08 -27.56 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.03 0.91 7.23 -2.39 -0.02 0.90 16 36 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.14 3.53 7.80 -2.39 -0.02 3.51 16 39 H 0.13 3.09 8.01 -2.39 -0.02 3.07 16 40 H 0.27 11.84 8.31 -92.71 -0.77 11.07 16 41 H 0.09 4.33 5.77 -2.39 -0.01 4.32 16 42 H 0.03 1.36 7.59 -2.39 -0.02 1.35 16 43 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 44 H 0.13 5.44 6.42 -2.38 -0.02 5.43 16 45 H 0.42 7.95 9.10 -74.05 -0.67 7.27 16 46 H 0.15 5.30 8.06 -2.91 -0.02 5.28 16 Total: -1.00 -70.25 388.58 2.74 -67.51 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -1.56 Total: 39.11 kcal Atomic # 6 Polarization: 32.49 SS G_CDS: 6.01 Total: 38.50 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -3.29 Total: -84.97 kcal Atomic # 8 Polarization: -96.17 SS G_CDS: -0.45 Total: -96.62 kcal Atomic # 14 Polarization: 34.44 SS G_CDS: 2.03 Total: 36.47 kcal Total: -70.25 2.74 -67.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603852733.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.802 kcal (2) G-P(sol) polarization free energy of solvation -70.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds