Wall clock time and date at job start Sat Apr 11 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47146 * 2 1 4 4 C 1.50697 * 109.47248 * 179.97438 * 3 2 1 5 5 N 1.29952 * 126.28744 * 90.02441 * 4 3 2 6 6 O 1.21294 * 110.25008 * 179.97438 * 5 4 3 7 7 C 1.33640 * 109.81433 * 359.97438 * 6 5 4 8 8 C 1.50708 * 126.55180 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47225 * 269.97812 * 8 7 6 10 10 C 1.52997 * 109.47052 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47245 * 180.02562 * 10 9 8 12 12 O 1.21291 * 119.99878 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00205 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99542 * 359.97438 * 13 11 10 15 15 H 1.07999 * 120.00396 * 8.08290 * 14 13 11 16 16 C 1.38952 * 119.99674 * 188.07812 * 14 13 11 17 17 N 1.31410 * 120.00157 * 26.14134 * 16 14 13 18 18 Si 1.86802 * 120.00131 * 206.13659 * 16 14 13 19 19 H 1.48505 * 109.46750 * 84.98989 * 18 16 14 20 20 H 1.48498 * 109.47051 * 204.98863 * 18 16 14 21 21 H 1.48500 * 109.46851 * 324.99206 * 18 16 14 22 22 C 1.46499 * 120.00077 * 180.02562 * 13 11 10 23 23 C 1.52997 * 109.47484 * 83.24345 * 22 13 11 24 24 C 1.50700 * 109.47376 * 180.02562 * 23 22 13 25 25 O 1.20829 * 119.99634 * 359.97438 * 24 23 22 26 26 O 1.34218 * 120.00357 * 180.02562 * 24 23 22 27 27 N 1.31134 * 106.89745 * 359.77156 * 7 6 5 28 28 H 1.09002 * 109.47572 * 300.00019 * 1 2 3 29 29 H 1.09005 * 109.47208 * 60.00306 * 1 2 3 30 30 H 1.09008 * 109.47046 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47262 * 240.00096 * 2 1 3 32 32 H 1.08999 * 109.46850 * 120.00322 * 2 1 3 33 33 H 1.08996 * 109.47031 * 300.00008 * 3 2 1 34 34 H 1.09002 * 109.46901 * 59.99570 * 3 2 1 35 35 H 1.08999 * 109.46967 * 29.98385 * 8 7 6 36 36 H 1.09000 * 109.46693 * 149.97904 * 8 7 6 37 37 H 1.08999 * 109.47616 * 300.00176 * 9 8 7 38 38 H 1.09008 * 109.46900 * 60.00200 * 9 8 7 39 39 H 1.09005 * 109.47321 * 300.00155 * 10 9 8 40 40 H 1.09001 * 109.47401 * 60.00395 * 10 9 8 41 41 H 0.96996 * 120.00362 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.46466 * 203.24478 * 22 13 11 43 43 H 1.09001 * 109.46842 * 323.24055 * 22 13 11 44 44 H 1.09004 * 109.46892 * 300.00170 * 23 22 13 45 45 H 1.08997 * 109.46924 * 59.99736 * 23 22 13 46 46 H 0.96698 * 117.00398 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3165 1.4428 -1.0465 6 8 5.4821 1.4432 -0.7109 7 6 5.5696 1.4438 0.6226 8 6 6.8364 1.4439 1.4390 9 6 7.2645 0.0015 1.7163 10 6 8.5509 0.0017 2.5446 11 6 8.9730 -1.4191 2.8173 12 8 8.3103 -2.3411 2.3907 13 7 10.0868 -1.6652 3.5352 14 6 10.8360 -0.6230 4.0169 15 1 10.4685 0.3893 3.9355 16 6 12.0683 -0.8691 4.6099 17 7 12.7532 -1.9414 4.2813 18 14 12.7514 0.3243 5.8743 19 1 12.2007 -0.0049 7.2137 20 1 14.2321 0.2162 5.9077 21 1 12.3643 1.7100 5.5068 22 6 10.4974 -3.0464 3.7998 23 6 11.2819 -3.5838 2.6012 24 6 11.7038 -5.0048 2.8732 25 8 11.4077 -5.5332 3.9187 26 8 12.4092 -5.6830 1.9546 27 7 4.3425 1.4487 1.0850 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 7.6240 1.9571 0.8873 36 1 6.6598 1.9586 2.3835 37 1 6.4768 -0.5116 2.2680 38 1 7.4410 -0.5131 0.7717 39 1 9.3385 0.5147 1.9925 40 1 8.3749 0.5164 3.4891 41 1 13.6136 -2.1130 4.6950 42 1 11.1278 -3.0740 4.6886 43 1 9.6136 -3.6634 3.9618 44 1 10.6515 -3.5561 1.7124 45 1 12.1657 -2.9667 2.4392 46 1 12.6573 -6.5914 2.1743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605383218.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:06 Heat of formation + Delta-G solvation = -77.209352 kcal Electronic energy + Delta-G solvation = -28856.389382 eV Core-core repulsion = 24556.131548 eV Total energy + Delta-G solvation = -4300.257834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.58779 -39.62493 -38.70829 -36.68693 -35.88369 -35.48221 -34.97854 -34.08193 -31.99564 -31.72071 -30.66311 -28.20911 -27.82875 -25.20608 -24.34102 -23.63555 -22.55691 -21.78742 -20.79144 -20.21002 -19.17089 -18.04691 -17.60815 -17.46928 -16.81829 -16.23400 -15.61678 -15.52433 -15.31708 -15.17880 -15.00583 -14.56355 -14.41050 -13.97435 -13.81194 -13.60202 -13.04626 -12.81132 -12.62918 -12.41206 -12.31616 -12.26790 -12.03259 -11.80436 -11.74643 -11.57234 -11.31809 -11.25792 -11.14171 -11.11201 -11.03087 -10.93906 -10.90654 -10.51416 -10.49741 -10.41144 -9.96198 -9.85371 -9.85350 -9.09697 -8.53746 -7.99675 -6.57991 -3.99851 1.13210 2.18211 2.81195 2.94730 3.04339 3.16604 3.17636 3.53995 3.61177 3.86727 3.95748 4.00253 4.59745 4.67831 4.68756 4.82023 4.89226 5.01846 5.07536 5.23728 5.29405 5.33425 5.44432 5.48282 5.68823 5.73415 5.76303 5.81121 5.86844 5.91723 5.95987 5.99480 6.01629 6.15995 6.34866 6.40619 6.49799 6.60790 6.64376 6.99005 7.13199 7.22421 7.39068 7.57911 8.15240 8.25474 8.54669 8.93549 9.38106 9.79231 10.44725 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002323 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.344196 B =12052.492148 C =13519.384279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.027 4.027 4 C 0.168 3.832 5 N -0.390 5.390 6 O 0.074 5.926 7 C 0.198 3.802 8 C -0.031 4.031 9 C -0.097 4.097 10 C -0.118 4.118 11 C 0.452 3.548 12 O -0.609 6.609 13 N -0.441 5.441 14 C -0.342 4.342 15 H 0.105 0.895 16 C 0.040 3.960 17 N -0.858 5.858 18 Si 0.918 3.082 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.270 1.270 22 C 0.151 3.849 23 C -0.110 4.110 24 C 0.491 3.509 25 O -0.529 6.529 26 O -0.526 6.526 27 N -0.485 5.485 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.272 0.728 42 H 0.106 0.894 43 H 0.049 0.951 44 H 0.082 0.918 45 H 0.136 0.864 46 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.613 6.075 -6.103 13.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.066 4.066 4 C -0.105 4.105 5 N -0.099 5.099 6 O 0.017 5.983 7 C -0.023 4.023 8 C -0.070 4.070 9 C -0.137 4.137 10 C -0.158 4.158 11 C 0.242 3.758 12 O -0.496 6.496 13 N -0.158 5.158 14 C -0.469 4.469 15 H 0.123 0.877 16 C -0.165 4.165 17 N -0.496 5.496 18 Si 0.744 3.256 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.194 1.194 22 C 0.027 3.973 23 C -0.148 4.148 24 C 0.335 3.665 25 O -0.418 6.418 26 O -0.337 6.337 27 N -0.218 5.218 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.106 0.894 40 H 0.103 0.897 41 H 0.083 0.917 42 H 0.124 0.876 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.153 0.847 46 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -11.549 5.831 -6.565 14.507 hybrid contribution 1.003 -0.062 0.838 1.308 sum -10.546 5.769 -5.727 13.315 Atomic orbital electron populations 1.21745 0.94737 1.02202 1.02013 1.21501 0.96396 0.94914 1.03122 1.20005 0.82910 0.99200 1.04461 1.25854 1.00235 1.00636 0.83733 1.74606 0.89475 1.21778 1.24049 1.85286 1.22241 1.65724 1.25051 1.28995 0.97183 0.94126 0.81950 1.20457 0.87488 1.01126 0.97965 1.21320 0.98348 0.92170 1.01813 1.21339 0.96745 0.96772 1.00915 1.20057 0.83504 0.90525 0.81751 1.90554 1.56783 1.46365 1.55905 1.43805 1.21200 1.05816 1.44994 1.19684 1.00605 0.88853 1.37711 0.87708 1.25165 0.95565 0.97575 0.98192 1.69979 1.12664 1.27995 1.38979 0.86098 0.77734 0.80386 0.81381 1.20201 1.21064 1.19420 1.20979 0.96815 0.81750 0.97723 1.21796 1.04132 0.87562 1.01344 1.23943 0.72949 0.89273 0.80365 1.90632 1.53891 1.70398 1.26866 1.84610 1.68562 1.31320 1.49199 1.71916 0.99764 1.20912 1.29240 0.92331 0.92542 0.92209 0.91612 0.91083 0.89290 0.88696 0.87827 0.87098 0.90690 0.90835 0.89425 0.89719 0.91715 0.87614 0.93291 0.89938 0.84689 0.74653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.65 16 2 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 3 C -0.03 -0.26 5.84 -27.89 -0.16 -0.42 16 4 C 0.17 2.22 7.47 -156.37 -1.17 1.06 16 5 N -0.39 -5.60 12.16 30.90 0.38 -5.22 16 6 O 0.07 1.04 11.31 18.11 0.20 1.24 16 7 C 0.20 2.59 7.77 -13.05 -0.10 2.49 16 8 C -0.03 -0.34 5.84 -27.88 -0.16 -0.50 16 9 C -0.10 -1.41 4.49 -26.74 -0.12 -1.53 16 10 C -0.12 -1.92 4.08 -27.88 -0.11 -2.03 16 11 C 0.45 9.88 7.58 -10.98 -0.08 9.80 16 12 O -0.61 -14.93 15.68 5.55 0.09 -14.84 16 13 N -0.44 -10.18 2.64 -114.81 -0.30 -10.49 16 14 C -0.34 -7.73 9.25 -14.93 -0.14 -7.87 16 15 H 0.11 2.17 6.47 -52.49 -0.34 1.83 16 16 C 0.04 0.92 4.88 -17.47 -0.09 0.83 16 17 N -0.86 -20.25 8.72 55.50 0.48 -19.76 16 18 Si 0.92 17.99 29.63 -169.99 -5.04 12.96 16 19 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 20 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 22 C 0.15 3.57 3.81 -4.04 -0.02 3.55 16 23 C -0.11 -2.37 5.61 -27.88 -0.16 -2.53 16 24 C 0.49 9.92 8.33 36.01 0.30 10.22 16 25 O -0.53 -11.89 16.74 -18.75 -0.31 -12.21 16 26 O -0.53 -8.57 13.42 -39.23 -0.53 -9.10 16 27 N -0.48 -6.85 11.55 -9.87 -0.11 -6.97 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 38 H 0.07 1.14 8.10 -51.92 -0.42 0.72 16 39 H 0.09 1.32 8.02 -51.93 -0.42 0.90 16 40 H 0.08 1.27 7.79 -51.93 -0.40 0.87 16 41 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 42 H 0.11 2.67 5.77 -51.93 -0.30 2.37 16 43 H 0.05 1.21 7.59 -51.93 -0.39 0.81 16 44 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 45 H 0.14 3.06 6.41 -51.93 -0.33 2.73 16 46 H 0.40 4.44 9.10 45.56 0.41 4.86 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -30.23 391.02 -7.02 -37.26 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -5.98 Total: 10.06 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -1.80 Total: 11.18 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: 0.44 Total: -42.44 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -0.55 Total: -34.91 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.04 Total: 12.96 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.23 -7.02 -37.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605383218.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.953 kcal (2) G-P(sol) polarization free energy of solvation -30.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds