Wall clock time and date at job start Sat Apr 11 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47146 * 2 1 4 4 C 1.50697 * 109.47248 * 179.97438 * 3 2 1 5 5 N 1.29952 * 126.28744 * 90.02441 * 4 3 2 6 6 O 1.21294 * 110.25008 * 179.97438 * 5 4 3 7 7 C 1.33640 * 109.81433 * 359.97438 * 6 5 4 8 8 C 1.50708 * 126.55180 * 179.97438 * 7 6 5 9 9 C 1.52995 * 109.47225 * 269.97812 * 8 7 6 10 10 C 1.52997 * 109.47052 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47245 * 180.02562 * 10 9 8 12 12 O 1.21291 * 119.99878 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00205 * 180.02562 * 11 10 9 14 14 C 1.37099 * 119.99542 * 359.97438 * 13 11 10 15 15 H 1.07999 * 120.00396 * 8.08290 * 14 13 11 16 16 C 1.38952 * 119.99674 * 188.07812 * 14 13 11 17 17 N 1.31410 * 120.00157 * 26.14134 * 16 14 13 18 18 Si 1.86802 * 120.00131 * 206.13659 * 16 14 13 19 19 H 1.48505 * 109.46750 * 84.98989 * 18 16 14 20 20 H 1.48498 * 109.47051 * 204.98863 * 18 16 14 21 21 H 1.48500 * 109.46851 * 324.99206 * 18 16 14 22 22 C 1.46499 * 120.00077 * 180.02562 * 13 11 10 23 23 C 1.52997 * 109.47484 * 83.24345 * 22 13 11 24 24 C 1.50700 * 109.47376 * 180.02562 * 23 22 13 25 25 O 1.20829 * 119.99634 * 359.97438 * 24 23 22 26 26 O 1.34218 * 120.00357 * 180.02562 * 24 23 22 27 27 N 1.31134 * 106.89745 * 359.77156 * 7 6 5 28 28 H 1.09002 * 109.47572 * 300.00019 * 1 2 3 29 29 H 1.09005 * 109.47208 * 60.00306 * 1 2 3 30 30 H 1.09008 * 109.47046 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47262 * 240.00096 * 2 1 3 32 32 H 1.08999 * 109.46850 * 120.00322 * 2 1 3 33 33 H 1.08996 * 109.47031 * 300.00008 * 3 2 1 34 34 H 1.09002 * 109.46901 * 59.99570 * 3 2 1 35 35 H 1.08999 * 109.46967 * 29.98385 * 8 7 6 36 36 H 1.09000 * 109.46693 * 149.97904 * 8 7 6 37 37 H 1.08999 * 109.47616 * 300.00176 * 9 8 7 38 38 H 1.09008 * 109.46900 * 60.00200 * 9 8 7 39 39 H 1.09005 * 109.47321 * 300.00155 * 10 9 8 40 40 H 1.09001 * 109.47401 * 60.00395 * 10 9 8 41 41 H 0.96996 * 120.00362 * 179.97438 * 17 16 14 42 42 H 1.09003 * 109.46466 * 203.24478 * 22 13 11 43 43 H 1.09001 * 109.46842 * 323.24055 * 22 13 11 44 44 H 1.09004 * 109.46892 * 300.00170 * 23 22 13 45 45 H 1.08997 * 109.46924 * 59.99736 * 23 22 13 46 46 H 0.96698 * 117.00398 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3165 1.4428 -1.0465 6 8 5.4821 1.4432 -0.7109 7 6 5.5696 1.4438 0.6226 8 6 6.8364 1.4439 1.4390 9 6 7.2645 0.0015 1.7163 10 6 8.5509 0.0017 2.5446 11 6 8.9730 -1.4191 2.8173 12 8 8.3103 -2.3411 2.3907 13 7 10.0868 -1.6652 3.5352 14 6 10.8360 -0.6230 4.0169 15 1 10.4685 0.3893 3.9355 16 6 12.0683 -0.8691 4.6099 17 7 12.7532 -1.9414 4.2813 18 14 12.7514 0.3243 5.8743 19 1 12.2007 -0.0049 7.2137 20 1 14.2321 0.2162 5.9077 21 1 12.3643 1.7100 5.5068 22 6 10.4974 -3.0464 3.7998 23 6 11.2819 -3.5838 2.6012 24 6 11.7038 -5.0048 2.8732 25 8 11.4077 -5.5332 3.9187 26 8 12.4092 -5.6830 1.9546 27 7 4.3425 1.4487 1.0850 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 7.6240 1.9571 0.8873 36 1 6.6598 1.9586 2.3835 37 1 6.4768 -0.5116 2.2680 38 1 7.4410 -0.5131 0.7717 39 1 9.3385 0.5147 1.9925 40 1 8.3749 0.5164 3.4891 41 1 13.6136 -2.1130 4.6950 42 1 11.1278 -3.0740 4.6886 43 1 9.6136 -3.6634 3.9618 44 1 10.6515 -3.5561 1.7124 45 1 12.1657 -2.9667 2.4392 46 1 12.6573 -6.5914 2.1743 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605383218.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:05 Heat of formation + Delta-G solvation = -96.540801 kcal Electronic energy + Delta-G solvation = -28857.227657 eV Core-core repulsion = 24556.131548 eV Total energy + Delta-G solvation = -4301.096109 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.61391 -41.26257 -40.39306 -37.61217 -37.34570 -36.91475 -36.39177 -35.04333 -33.48979 -33.18662 -32.27906 -29.22100 -28.79077 -26.95522 -25.84769 -24.71498 -23.64570 -22.79151 -21.90169 -21.63322 -20.88873 -19.24296 -19.06021 -18.65717 -18.28816 -17.89773 -17.25595 -16.82419 -16.59260 -16.42295 -16.06395 -15.90224 -15.76574 -15.36418 -14.99326 -14.56681 -14.49062 -14.13886 -14.07506 -13.77713 -13.48814 -13.28069 -13.18898 -13.07577 -12.88214 -12.82305 -12.61146 -12.55246 -12.49627 -12.49050 -12.15414 -12.07195 -12.04663 -11.98290 -11.76851 -11.70493 -11.59914 -11.55075 -10.88980 -10.86475 -10.29471 -9.79274 -8.30561 -5.77292 0.11033 1.17468 1.30245 1.48472 1.58665 1.66072 1.83391 2.00803 2.26180 2.38690 2.64526 3.01719 3.08293 3.21235 3.82080 3.98168 4.01963 4.04006 4.12137 4.18161 4.19719 4.35662 4.43766 4.58274 4.60738 4.64795 4.68574 4.74350 4.74830 4.81544 4.85118 4.88530 4.95964 5.02900 5.15417 5.18759 5.25605 5.29569 5.33751 5.35624 5.40654 5.58575 5.67946 5.83172 6.48879 7.07595 7.13619 7.18929 7.64415 8.05923 8.72494 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012276 B = 0.002323 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.344196 B =12052.492148 C =13519.384279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.027 4.027 4 C 0.165 3.835 5 N -0.410 5.410 6 O 0.065 5.935 7 C 0.198 3.802 8 C -0.021 4.021 9 C -0.086 4.086 10 C -0.107 4.107 11 C 0.439 3.561 12 O -0.644 6.644 13 N -0.452 5.452 14 C -0.354 4.354 15 H 0.128 0.872 16 C 0.000 4.000 17 N -0.882 5.882 18 Si 0.981 3.019 19 H -0.286 1.286 20 H -0.292 1.292 21 H -0.251 1.251 22 C 0.156 3.844 23 C -0.099 4.099 24 C 0.499 3.501 25 O -0.555 6.555 26 O -0.512 6.512 27 N -0.505 5.505 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.270 0.730 42 H 0.087 0.913 43 H 0.026 0.974 44 H 0.079 0.921 45 H 0.127 0.873 46 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.800 8.065 -6.220 14.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.066 4.066 4 C -0.108 4.108 5 N -0.121 5.121 6 O 0.010 5.990 7 C -0.022 4.022 8 C -0.059 4.059 9 C -0.126 4.126 10 C -0.147 4.147 11 C 0.230 3.770 12 O -0.533 6.533 13 N -0.170 5.170 14 C -0.481 4.481 15 H 0.145 0.855 16 C -0.203 4.203 17 N -0.520 5.520 18 Si 0.806 3.194 19 H -0.212 1.212 20 H -0.218 1.218 21 H -0.174 1.174 22 C 0.032 3.968 23 C -0.138 4.138 24 C 0.344 3.656 25 O -0.447 6.447 26 O -0.325 6.325 27 N -0.239 5.239 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.127 0.873 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.080 0.920 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.098 0.902 45 H 0.145 0.855 46 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -11.711 7.822 -6.704 15.597 hybrid contribution 1.074 -0.800 0.837 1.580 sum -10.637 7.022 -5.867 14.031 Atomic orbital electron populations 1.21717 0.92730 1.02718 1.03021 1.21461 0.98073 0.94358 1.01724 1.20214 0.80772 0.99680 1.05888 1.26506 1.01639 0.99401 0.83230 1.74595 0.89764 1.23005 1.24778 1.85256 1.22243 1.66044 1.25469 1.29407 0.97679 0.93231 0.81834 1.20508 0.87405 0.98841 0.99177 1.21126 0.96837 0.94343 1.00260 1.21330 0.97880 0.93024 1.02442 1.21074 0.82628 0.92643 0.80679 1.90527 1.57625 1.48161 1.57036 1.44048 1.21847 1.05619 1.45470 1.20144 1.00619 0.89532 1.37774 0.85501 1.25939 0.95942 0.99098 0.99283 1.70071 1.12818 1.29513 1.39627 0.85114 0.76390 0.79472 0.78440 1.21199 1.21798 1.17417 1.20757 0.95564 0.82536 0.97931 1.21540 1.03329 0.88688 1.00238 1.23548 0.72886 0.88944 0.80262 1.90625 1.55106 1.70911 1.28038 1.84522 1.67291 1.33124 1.47583 1.71937 1.00417 1.21713 1.29879 0.91436 0.91403 0.91977 0.92798 0.92711 0.87703 0.87349 0.84654 0.84985 0.93039 0.92472 0.87350 0.87705 0.92025 0.89448 0.95529 0.90245 0.85537 0.71603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.91 71.98 0.71 -1.02 16 2 C -0.12 -2.05 5.92 30.59 0.18 -1.87 16 3 C -0.03 -0.48 5.84 29.85 0.17 -0.31 16 4 C 0.17 4.25 7.47 138.46 1.03 5.29 16 5 N -0.41 -11.59 12.16 -60.33 -0.73 -12.32 16 6 O 0.06 1.77 11.31 74.87 0.85 2.61 16 7 C 0.20 4.96 7.77 88.38 0.69 5.65 16 8 C -0.02 -0.40 5.84 29.85 0.17 -0.23 16 9 C -0.09 -2.40 4.49 30.59 0.14 -2.26 16 10 C -0.11 -3.29 4.08 29.85 0.12 -3.17 16 11 C 0.44 19.17 7.58 87.66 0.66 19.84 16 12 O -0.64 -32.37 15.68 -3.06 -0.05 -32.42 16 13 N -0.45 -21.03 2.64 -635.53 -1.68 -22.70 16 14 C -0.35 -15.65 9.25 84.04 0.78 -14.87 16 15 H 0.13 4.90 6.47 -2.91 -0.02 4.88 16 16 C 0.00 0.01 4.88 84.93 0.41 0.42 16 17 N -0.88 -41.81 8.72 21.66 0.19 -41.62 16 18 Si 0.98 35.99 29.63 68.60 2.03 38.02 16 19 H -0.29 -10.86 7.11 99.48 0.71 -10.15 16 20 H -0.29 -10.95 7.11 99.48 0.71 -10.25 16 21 H -0.25 -8.38 7.11 99.48 0.71 -7.68 16 22 C 0.16 7.61 3.81 86.38 0.33 7.94 16 23 C -0.10 -4.38 5.61 29.85 0.17 -4.21 16 24 C 0.50 20.24 8.33 71.24 0.59 20.83 16 25 O -0.56 -25.29 16.74 21.96 0.37 -24.92 16 26 O -0.51 -16.01 13.42 -51.30 -0.69 -16.70 16 27 N -0.51 -13.86 11.55 -303.20 -3.50 -17.36 16 28 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.14 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 1.66 8.10 -2.39 -0.02 1.65 16 38 H 0.06 1.76 8.10 -2.38 -0.02 1.74 16 39 H 0.11 2.92 8.02 -2.38 -0.02 2.90 16 40 H 0.10 2.84 7.79 -2.39 -0.02 2.82 16 41 H 0.27 12.41 8.31 -92.71 -0.77 11.64 16 42 H 0.09 4.56 5.77 -2.39 -0.01 4.55 16 43 H 0.03 1.37 7.59 -2.39 -0.02 1.35 16 44 H 0.08 3.50 8.14 -2.38 -0.02 3.48 16 45 H 0.13 5.83 6.41 -2.39 -0.02 5.82 16 46 H 0.42 8.60 9.10 -74.06 -0.67 7.93 16 Total: -1.00 -66.89 391.02 3.29 -63.60 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: 0.34 Total: 31.79 kcal Atomic # 6 Polarization: 25.86 SS G_CDS: 6.17 Total: 32.03 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -5.73 Total: -94.01 kcal Atomic # 8 Polarization: -71.91 SS G_CDS: 0.48 Total: -71.43 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -66.89 3.29 -63.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605383218.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.940 kcal (2) G-P(sol) polarization free energy of solvation -66.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds