Wall clock time and date at job start Sat Apr 11 2020 05:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 120.00360 * 2 1 4 4 H 1.48506 * 109.46962 * 273.11634 * 3 2 1 5 5 H 1.48502 * 109.46825 * 33.11325 * 3 2 1 6 6 H 1.48494 * 109.47434 * 153.11439 * 3 2 1 7 7 C 1.38810 * 119.99896 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99807 * 339.29166 * 7 2 1 9 9 N 1.36930 * 120.00451 * 159.01776 * 7 2 1 10 10 C 1.46926 * 120.63502 * 152.66529 * 9 7 2 11 11 C 1.53625 * 108.54632 * 126.37083 * 10 9 7 12 12 C 1.53037 * 109.24102 * 54.85459 * 11 10 9 13 13 N 1.46499 * 109.46123 * 178.49185 * 12 11 10 14 14 C 1.34770 * 120.00302 * 275.07160 * 13 12 11 15 15 O 1.21348 * 119.99966 * 359.97438 * 14 13 12 16 16 C 1.49450 * 120.00240 * 179.97438 * 14 13 12 17 17 O 1.21348 * 119.99793 * 359.97438 * 16 14 13 18 18 N 1.34777 * 120.00219 * 180.02562 * 16 14 13 19 19 C 1.47033 * 125.64663 * 359.68438 * 18 16 14 20 20 C 1.54331 * 107.26413 * 178.85218 * 19 18 16 21 21 C 1.55159 * 103.02285 * 338.14783 * 20 19 18 22 22 H 1.09000 * 110.99986 * 277.22813 * 21 20 19 23 23 C 1.50692 * 111.00481 * 153.38197 * 21 20 19 24 24 O 1.20828 * 120.00189 * 6.34659 * 23 21 20 25 25 O 1.34234 * 119.99855 * 186.34699 * 23 21 20 26 26 C 1.47425 * 125.65231 * 180.02562 * 18 16 14 27 27 C 1.53045 * 109.54126 * 298.51514 * 12 11 10 28 28 C 1.46924 * 120.62749 * 332.94721 * 9 7 2 29 29 H 0.97004 * 119.99856 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.58482 * 246.20576 * 10 9 7 31 31 H 1.08996 * 109.58589 * 6.62778 * 10 9 7 32 32 H 1.09000 * 109.62955 * 294.86775 * 11 10 9 33 33 H 1.08995 * 109.43420 * 174.72577 * 11 10 9 34 34 H 1.09000 * 109.46107 * 58.53703 * 12 11 10 35 35 H 0.97003 * 119.99875 * 95.06596 * 13 12 11 36 36 H 1.08997 * 109.88078 * 298.40092 * 19 18 16 37 37 H 1.09003 * 109.87850 * 59.56475 * 19 18 16 38 38 H 1.08994 * 110.85199 * 219.67004 * 20 19 18 39 39 H 1.09008 * 110.66525 * 96.52497 * 20 19 18 40 40 H 0.96703 * 117.00155 * 179.97438 * 25 23 21 41 41 H 1.09003 * 110.36327 * 322.92640 * 26 18 16 42 42 H 1.09001 * 110.36783 * 85.24573 * 26 18 16 43 43 H 1.09001 * 109.49447 * 301.41373 * 27 12 11 44 44 H 1.08994 * 109.49995 * 181.31704 * 27 12 11 45 45 H 1.08999 * 109.58631 * 353.37026 * 28 9 7 46 46 H 1.08998 * 109.59226 * 113.79946 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4319 2.0844 -1.3981 5 1 1.4822 2.6327 0.7649 6 1 3.5792 1.4220 0.6331 7 6 2.0102 -1.2021 -0.0005 8 1 1.5224 -2.1074 0.3298 9 7 3.3114 -1.2414 -0.4252 10 6 4.2350 -2.2637 0.0853 11 6 4.8669 -2.9923 -1.1105 12 6 5.5178 -1.9655 -2.0400 13 7 6.1532 -2.6581 -3.1638 14 6 7.4033 -3.1449 -3.0355 15 8 8.0029 -3.0091 -1.9893 16 6 8.0512 -3.8520 -4.1817 17 8 7.4514 -3.9882 -5.2278 18 7 9.3012 -4.3392 -4.0533 19 6 10.1401 -4.2400 -2.8498 20 6 11.4693 -4.9616 -3.1573 21 6 11.0900 -5.9104 -4.3249 22 1 10.6358 -6.8279 -3.9509 23 6 12.2897 -6.2156 -5.1843 24 8 13.3851 -5.8291 -4.8518 25 8 12.1413 -6.9169 -6.3192 26 6 10.0565 -5.0538 -5.0984 27 6 4.4502 -1.0058 -2.5704 28 6 3.8121 -0.2582 -1.3953 29 1 -0.4850 0.8401 0.0004 30 1 5.0145 -1.7875 0.6801 31 1 3.6868 -2.9766 0.7012 32 1 4.0968 -3.5389 -1.6548 33 1 5.6238 -3.6895 -0.7516 34 1 6.2706 -1.4022 -1.4885 35 1 5.6740 -2.7664 -4.0002 36 1 10.3301 -3.1926 -2.6158 37 1 9.6426 -4.7253 -2.0101 38 1 11.8106 -5.5310 -2.2928 39 1 12.2306 -4.2478 -3.4721 40 1 12.9397 -7.0875 -6.8374 41 1 9.3905 -5.6939 -5.6771 42 1 10.5645 -4.3443 -5.7516 43 1 3.6840 -1.5712 -3.1010 44 1 4.9106 -0.2893 -3.2506 45 1 2.9848 0.3526 -1.7567 46 1 4.5580 0.3781 -0.9190 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605585552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:43:16 Heat of formation + Delta-G solvation = -151.154441 kcal Electronic energy + Delta-G solvation = -29625.131804 eV Core-core repulsion = 25321.667470 eV Total energy + Delta-G solvation = -4303.464334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10385 -41.38180 -40.21214 -39.01311 -38.57486 -37.14055 -36.18416 -34.08884 -33.12877 -31.99896 -31.84644 -30.50096 -27.74451 -26.51792 -24.78354 -24.30460 -23.85477 -22.88305 -21.48540 -21.36998 -20.80706 -19.22507 -19.07885 -18.53070 -18.34768 -18.01093 -17.40708 -17.03750 -16.81587 -16.65545 -15.95108 -15.90181 -15.61637 -15.36487 -15.11204 -14.76702 -14.70853 -14.50001 -14.31445 -14.18938 -14.07775 -13.86298 -13.75110 -13.46477 -13.03873 -12.69946 -12.59627 -12.55125 -12.51326 -12.39230 -12.27934 -12.03333 -11.97166 -11.80735 -11.68143 -11.57723 -11.36677 -10.80414 -10.60708 -10.25037 -9.95794 -8.96065 -8.14986 -5.47333 0.28394 0.96176 1.21578 1.31329 1.44262 1.52785 1.98100 2.07415 2.40963 2.42852 3.06081 3.06458 3.30679 3.37864 3.40143 3.73172 3.89009 3.93264 4.06950 4.18322 4.18835 4.30488 4.38099 4.46529 4.53060 4.60362 4.64748 4.66738 4.73926 4.82092 4.87573 4.91545 4.98238 5.01221 5.06777 5.11732 5.16322 5.28473 5.40942 5.56842 5.87539 5.89949 6.13622 6.16431 6.57671 6.88925 6.91688 6.94068 7.62536 8.02331 9.04671 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.035192 B = 0.002041 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.443487 B =13716.916522 C =13862.111247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.036 4.036 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.313 1.313 6 H -0.261 1.261 7 C -0.248 4.248 8 H 0.052 0.948 9 N -0.620 5.620 10 C 0.147 3.853 11 C -0.129 4.129 12 C 0.160 3.840 13 N -0.685 5.685 14 C 0.509 3.491 15 O -0.530 6.530 16 C 0.525 3.475 17 O -0.541 6.541 18 N -0.591 5.591 19 C 0.106 3.894 20 C -0.110 4.110 21 C -0.093 4.093 22 H 0.148 0.852 23 C 0.503 3.497 24 O -0.539 6.539 25 O -0.509 6.509 26 C 0.118 3.882 27 C -0.131 4.131 28 C 0.122 3.878 29 H 0.261 0.739 30 H 0.037 0.963 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.086 0.914 35 H 0.417 0.583 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.431 0.569 41 H 0.100 0.900 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.090 0.910 45 H 0.057 0.943 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.364 -12.884 -12.338 32.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.231 4.231 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.242 1.242 6 H -0.185 1.185 7 C -0.377 4.377 8 H 0.070 0.930 9 N -0.344 5.344 10 C 0.022 3.978 11 C -0.169 4.169 12 C 0.056 3.944 13 N -0.337 5.337 14 C 0.290 3.710 15 O -0.407 6.407 16 C 0.308 3.692 17 O -0.418 6.418 18 N -0.325 5.325 19 C -0.016 4.016 20 C -0.148 4.148 21 C -0.112 4.112 22 H 0.166 0.834 23 C 0.345 3.655 24 O -0.429 6.429 25 O -0.323 6.323 26 C -0.004 4.004 27 C -0.171 4.171 28 C -0.003 4.003 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.104 0.896 35 H 0.254 0.746 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.105 0.895 40 H 0.293 0.707 41 H 0.118 0.882 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.108 0.892 45 H 0.075 0.925 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 27.218 -12.574 -11.827 32.231 hybrid contribution -0.036 0.761 -0.480 0.900 sum 27.182 -11.813 -12.307 32.092 Atomic orbital electron populations 1.69971 1.07433 1.27206 1.55612 1.25914 0.95841 1.00985 1.00347 0.85938 0.78756 0.80189 0.77725 1.19725 1.24202 1.18504 1.18848 0.86794 0.93555 1.38525 0.92981 1.44528 1.07955 1.34507 1.47429 1.21117 0.91893 0.90629 0.94159 1.22306 0.99542 0.97870 0.97228 1.20904 0.94212 0.92785 0.86514 1.45930 1.14430 1.55519 1.17797 1.20008 0.82766 0.80315 0.87953 1.90750 1.63516 1.57202 1.29230 1.19796 0.81387 0.80150 0.87857 1.90775 1.63209 1.58188 1.29634 1.48255 1.13034 1.54355 1.16839 1.22363 0.90023 1.02462 0.86736 1.22715 0.96063 0.97921 0.98116 1.22215 0.91903 1.02275 0.94825 0.83431 1.22897 0.89671 0.73386 0.79533 1.90759 1.29142 1.50995 1.72033 1.84513 1.45457 1.67650 1.34672 1.22267 0.93148 0.95061 0.89931 1.22201 0.97601 0.98814 0.98464 1.21376 0.97012 0.92022 0.89931 0.92978 0.94487 0.92154 0.92120 0.90806 0.89620 0.74628 0.90232 0.89547 0.86807 0.89502 0.70657 0.88184 0.89918 0.91142 0.89199 0.92468 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.55 13.97 21.65 0.30 -59.24 16 2 C -0.04 -2.08 5.23 84.86 0.44 -1.64 16 3 Si 0.95 45.58 24.35 68.60 1.67 47.25 16 4 H -0.27 -12.16 6.62 99.48 0.66 -11.50 16 5 H -0.31 -15.50 7.11 99.48 0.71 -14.80 16 6 H -0.26 -12.01 6.64 99.48 0.66 -11.35 16 7 C -0.25 -13.79 10.03 84.03 0.84 -12.94 16 8 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 9 N -0.62 -28.15 2.77 -698.27 -1.93 -30.08 16 10 C 0.15 5.51 6.54 86.51 0.57 6.08 16 11 C -0.13 -3.97 5.67 30.82 0.17 -3.80 16 12 C 0.16 4.51 2.41 45.02 0.11 4.62 16 13 N -0.68 -16.65 5.07 -443.75 -2.25 -18.90 16 14 C 0.51 12.49 7.82 87.27 0.68 13.17 16 15 O -0.53 -14.35 13.79 -3.24 -0.04 -14.40 16 16 C 0.53 11.84 7.91 87.27 0.69 12.54 16 17 O -0.54 -14.29 16.73 -3.24 -0.05 -14.34 16 18 N -0.59 -10.04 3.33 -813.29 -2.70 -12.74 16 19 C 0.11 1.46 5.49 86.73 0.48 1.93 16 20 C -0.11 -1.02 6.03 31.79 0.19 -0.82 16 21 C -0.09 -0.78 3.55 -10.14 -0.04 -0.81 16 22 H 0.15 0.70 8.14 -2.39 -0.02 0.68 16 23 C 0.50 5.15 7.63 71.23 0.54 5.69 16 24 O -0.54 -9.02 16.55 21.96 0.36 -8.65 16 25 O -0.51 -3.11 13.41 -51.46 -0.69 -3.80 16 26 C 0.12 1.43 6.35 86.86 0.55 1.98 16 27 C -0.13 -4.01 5.55 30.67 0.17 -3.84 16 28 C 0.12 4.87 4.20 86.36 0.36 5.23 16 29 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 30 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 34 H 0.09 2.54 7.58 -2.39 -0.02 2.52 16 35 H 0.42 9.25 8.07 -92.71 -0.75 8.50 16 36 H 0.08 1.25 7.71 -2.39 -0.02 1.23 16 37 H 0.09 1.26 7.57 -2.39 -0.02 1.24 16 38 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 0.95 7.49 -2.38 -0.02 0.93 16 40 H 0.43 -0.70 9.10 -74.06 -0.67 -1.38 16 41 H 0.10 1.23 8.04 -2.39 -0.02 1.21 16 42 H 0.08 0.97 8.03 -2.39 -0.02 0.95 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.06 2.53 4.48 -2.39 -0.01 2.52 16 46 H 0.04 1.44 7.08 -2.39 -0.02 1.42 16 Total: -1.00 -74.70 371.19 -0.05 -74.75 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -0.48 Total: 12.78 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 5.77 Total: 27.38 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -6.58 Total: -120.97 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.43 Total: -41.20 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.67 Total: 47.25 kcal Total: -74.70 -0.05 -74.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605585552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.403 kcal (2) G-P(sol) polarization free energy of solvation -74.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds