Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47390 * 2 1 4 4 C 1.46498 * 120.00060 * 270.00261 * 3 2 1 5 5 C 1.50696 * 109.46972 * 269.99564 * 4 3 2 6 6 H 1.08005 * 120.00483 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00068 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99832 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99991 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47249 * 89.99637 * 9 7 5 11 11 H 1.48496 * 109.47176 * 209.99726 * 9 7 5 12 12 H 1.48504 * 109.46995 * 329.99981 * 9 7 5 13 13 C 1.34779 * 119.99622 * 89.99877 * 3 2 1 14 14 O 1.21286 * 119.99712 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00057 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.46695 * 180.02562 * 15 13 3 17 17 C 1.34231 * 116.99688 * 179.97438 * 16 15 13 18 18 O 1.20826 * 119.99980 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.99990 * 179.97438 * 17 16 15 20 20 C 1.52994 * 109.47160 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47421 * 179.97438 * 20 19 17 22 22 C 1.50698 * 109.47431 * 180.02562 * 21 20 19 23 23 N 1.31130 * 126.54646 * 90.00204 * 22 21 20 24 24 C 1.34492 * 105.61399 * 179.97438 * 23 22 21 25 25 C 1.50700 * 126.29104 * 180.02562 * 24 23 22 26 26 N 1.29954 * 107.42242 * 359.97438 * 24 23 22 27 27 O 1.21293 * 110.25286 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.47439 * 299.99830 * 1 2 3 29 29 H 1.09001 * 109.47300 * 60.00238 * 1 2 3 30 30 H 1.09002 * 109.47673 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47151 * 239.99943 * 2 1 3 32 32 H 1.09000 * 109.47179 * 120.00296 * 2 1 3 33 33 H 1.08998 * 109.47557 * 29.99483 * 4 3 2 34 34 H 1.09001 * 109.47292 * 149.99896 * 4 3 2 35 35 H 0.97005 * 119.99549 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47026 * 60.00404 * 15 13 3 37 37 H 1.08999 * 109.47080 * 299.99709 * 15 13 3 38 38 H 1.09000 * 109.46892 * 60.00233 * 19 17 16 39 39 H 1.08997 * 109.47395 * 300.00449 * 19 17 16 40 40 H 1.09000 * 109.46883 * 60.00404 * 20 19 17 41 41 H 1.08997 * 109.47478 * 300.00575 * 20 19 17 42 42 H 1.09000 * 109.46731 * 60.00349 * 21 20 19 43 43 H 1.08997 * 109.47295 * 300.00724 * 21 20 19 44 44 H 1.08999 * 109.47105 * 269.97611 * 25 24 23 45 45 H 1.09005 * 109.47013 * 29.97723 * 25 24 23 46 46 H 1.08996 * 109.47115 * 149.97626 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1491 2.3896 -2.8780 8 7 5.3913 2.1834 -3.2573 9 14 3.0128 3.4351 -3.9292 10 1 3.1163 4.8554 -3.5081 11 1 3.4058 3.3120 -5.3559 12 1 1.6131 2.9691 -3.7592 13 6 2.2429 2.0164 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9922 1.3058 2.4723 16 8 2.3061 2.1957 3.5759 17 6 2.1349 1.7120 4.8163 18 8 1.7364 0.5823 4.9746 19 6 2.4408 2.5775 6.0115 20 6 2.1622 1.7921 7.2946 21 6 2.4733 2.6706 8.5080 22 6 2.1995 1.8968 9.7719 23 7 3.0507 1.1444 10.4266 24 6 2.3697 0.6602 11.4805 25 6 2.9088 -0.2621 12.5435 26 7 1.1617 1.1345 11.4143 27 8 1.0432 1.8471 10.4400 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 5.7172 2.5733 -4.0836 36 1 2.6228 0.4186 2.5298 37 1 0.9444 1.0113 2.5302 38 1 1.8113 3.4670 5.9865 39 1 3.4894 2.8738 5.9868 40 1 2.7914 0.9024 7.3198 41 1 1.1134 1.4962 7.3191 42 1 1.8444 3.5605 8.4830 43 1 3.5221 2.9661 8.4833 44 1 2.7508 -1.2972 12.2407 45 1 3.9756 -0.0807 12.6749 46 1 2.3900 -0.0753 13.4837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000061236157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -59.291609 kcal Electronic energy + Delta-G solvation = -28218.554630 eV Core-core repulsion = 23919.073767 eV Total energy + Delta-G solvation = -4299.480863 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.97839 -40.69427 -39.13215 -36.90498 -36.48287 -35.74651 -35.43466 -33.02818 -32.78318 -30.51814 -30.00025 -29.50100 -28.65717 -26.94977 -24.40074 -23.50185 -23.07982 -22.30170 -21.57887 -20.75577 -18.72680 -18.48942 -18.07010 -17.64627 -17.12856 -16.87369 -16.73359 -16.12692 -15.74677 -15.48730 -15.02491 -14.70466 -14.31944 -14.05065 -13.98430 -13.62854 -13.58204 -13.50114 -13.15174 -12.99191 -12.80329 -12.61298 -12.46704 -12.34421 -12.21730 -12.08332 -11.86380 -11.70283 -11.49525 -11.44327 -11.31219 -11.05673 -10.93347 -10.69082 -10.62298 -10.54091 -10.27059 -10.20153 -9.59057 -9.14977 -8.62503 -7.85686 -6.12234 -4.11727 0.72813 1.80141 2.06007 2.25055 2.49225 3.12918 3.21569 3.26684 3.32506 3.34473 3.62640 3.71421 4.22820 4.36111 4.37909 4.40089 4.59658 4.74729 4.80353 4.87124 4.92443 4.95552 5.01686 5.08839 5.12740 5.15201 5.20972 5.23764 5.28731 5.46087 5.46649 5.49368 5.62305 5.62801 5.70568 5.90236 6.07422 6.29358 6.32553 6.62843 6.86698 7.21229 7.55236 7.60426 7.76935 8.07745 8.41315 8.78183 8.91172 9.47212 11.00998 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.001668 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.909796 B =16783.639855 C =17139.966214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.587 5.587 4 C 0.218 3.782 5 C -0.532 4.532 6 H 0.075 0.925 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.876 3.124 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.509 3.491 14 O -0.518 6.518 15 C 0.051 3.949 16 O -0.329 6.329 17 C 0.461 3.539 18 O -0.512 6.512 19 C -0.111 4.111 20 C -0.108 4.108 21 C -0.028 4.028 22 C 0.188 3.812 23 N -0.481 5.481 24 C 0.168 3.832 25 C -0.064 4.064 26 N -0.388 5.388 27 O 0.078 5.922 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.115 0.885 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.092 0.908 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.108 -2.927 25.790 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.023 4.023 3 N -0.321 5.321 4 C 0.098 3.902 5 C -0.571 4.571 6 H 0.093 0.907 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.703 3.297 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.191 1.191 13 C 0.294 3.706 14 O -0.394 6.394 15 C -0.026 4.026 16 O -0.244 6.244 17 C 0.304 3.696 18 O -0.401 6.401 19 C -0.149 4.149 20 C -0.146 4.146 21 C -0.067 4.067 22 C -0.032 4.032 23 N -0.215 5.215 24 C -0.105 4.105 25 C -0.122 4.122 26 N -0.096 5.096 27 O 0.019 5.981 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.127 0.873 43 H 0.134 0.866 44 H 0.108 0.892 45 H 0.111 0.889 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.095 -2.996 26.323 28.011 hybrid contribution -0.491 0.301 -0.867 1.041 sum -9.586 -2.695 25.456 27.334 Atomic orbital electron populations 1.22244 0.96479 1.01896 1.02315 1.21542 0.93652 0.83567 1.03512 1.47874 1.64179 1.13542 1.06485 1.19698 0.97519 0.93433 0.79528 1.21322 0.95290 1.33183 1.07286 0.90677 1.24853 0.95017 0.95752 0.97321 1.69898 1.15101 1.44857 1.23525 0.86849 0.81409 0.81623 0.79795 1.19849 1.21022 1.19057 1.19729 0.79424 0.87128 0.84328 1.90718 1.44304 1.17578 1.86755 1.22926 1.02777 0.92672 0.84271 1.86559 1.78464 1.44918 1.14418 1.23673 0.74201 0.86956 0.84768 1.90680 1.42572 1.20102 1.86747 1.21305 1.06064 0.98824 0.88696 1.21419 1.04387 0.98550 0.90284 1.20283 1.05552 0.96770 0.84123 1.28756 0.80961 0.96053 0.97452 1.71924 1.30800 1.12593 1.06200 1.25944 0.86962 1.00515 0.97088 1.20154 1.02228 0.96348 0.93450 1.74651 1.20621 1.09620 1.04743 1.85295 1.35872 1.49415 1.27475 0.93038 0.91965 0.91679 0.89165 0.91381 0.94887 0.94402 0.92500 0.88451 0.88658 0.86796 0.86699 0.89727 0.89940 0.87309 0.86555 0.89215 0.88941 0.89499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.06 10.24 37.15 0.38 -1.68 16 2 C 0.10 1.50 5.93 -4.05 -0.02 1.48 16 3 N -0.59 -11.65 2.46 -175.07 -0.43 -12.08 16 4 C 0.22 5.18 4.23 -5.20 -0.02 5.16 16 5 C -0.53 -15.02 9.94 -34.44 -0.34 -15.36 16 6 H 0.08 2.32 8.06 -52.48 -0.42 1.90 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.90 -27.27 13.96 55.43 0.77 -26.49 16 9 Si 0.88 21.17 27.47 -169.99 -4.67 16.50 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 13 C 0.51 10.21 7.75 -10.99 -0.09 10.12 16 14 O -0.52 -12.67 16.08 -14.11 -0.23 -12.90 16 15 C 0.05 0.77 4.50 36.00 0.16 0.93 16 16 O -0.33 -4.93 9.75 -45.91 -0.45 -5.38 16 17 C 0.46 5.47 7.96 36.01 0.29 5.76 16 18 O -0.51 -7.14 15.73 -18.75 -0.29 -7.44 16 19 C -0.11 -0.74 5.81 -27.88 -0.16 -0.91 16 20 C -0.11 -0.67 4.49 -26.73 -0.12 -0.79 16 21 C -0.03 -0.12 5.84 -27.88 -0.16 -0.29 16 22 C 0.19 1.51 7.77 -13.06 -0.10 1.41 16 23 N -0.48 -4.73 11.55 -9.87 -0.11 -4.84 16 24 C 0.17 1.58 8.22 -156.37 -1.28 0.29 16 25 C -0.06 -0.35 10.51 36.01 0.38 0.03 16 26 N -0.39 -4.08 12.16 30.90 0.38 -3.71 16 27 O 0.08 0.73 11.31 18.11 0.20 0.93 16 28 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 1.39 8.07 -51.92 -0.42 0.97 16 32 H 0.07 0.86 6.44 -51.93 -0.33 0.52 16 33 H 0.03 0.74 7.13 -51.93 -0.37 0.37 16 34 H 0.04 0.96 6.85 -51.93 -0.36 0.61 16 35 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.10 1.36 7.39 -51.93 -0.38 0.98 16 37 H 0.10 1.23 7.18 -51.93 -0.37 0.86 16 38 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.11 0.21 8.14 -51.93 -0.42 -0.22 16 43 H 0.12 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 395.99 15.07 5.97 5.97 Total: -1.00 -38.06 395.99 -6.90 -44.96 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -6.85 Total: -3.70 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -1.19 Total: 8.17 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.61 Total: -47.12 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.76 Total: -24.77 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.67 Total: 16.50 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -38.06 -6.90 -44.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061236157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.331 kcal (2) G-P(sol) polarization free energy of solvation -38.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds