Wall clock time and date at job start Sat Apr 11 2020 05:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.47390 * 2 1 4 4 C 1.46498 * 120.00060 * 270.00261 * 3 2 1 5 5 C 1.50696 * 109.46972 * 269.99564 * 4 3 2 6 6 H 1.08005 * 120.00483 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00068 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99832 * 179.97438 * 7 5 4 9 9 Si 1.86794 * 119.99991 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47249 * 89.99637 * 9 7 5 11 11 H 1.48496 * 109.47176 * 209.99726 * 9 7 5 12 12 H 1.48504 * 109.46995 * 329.99981 * 9 7 5 13 13 C 1.34779 * 119.99622 * 89.99877 * 3 2 1 14 14 O 1.21286 * 119.99712 * 180.02562 * 13 3 2 15 15 C 1.50697 * 120.00057 * 0.02562 * 13 3 2 16 16 O 1.45201 * 109.46695 * 180.02562 * 15 13 3 17 17 C 1.34231 * 116.99688 * 179.97438 * 16 15 13 18 18 O 1.20826 * 119.99980 * 0.02562 * 17 16 15 19 19 C 1.50704 * 119.99990 * 179.97438 * 17 16 15 20 20 C 1.52994 * 109.47160 * 179.97438 * 19 17 16 21 21 C 1.53001 * 109.47421 * 179.97438 * 20 19 17 22 22 C 1.50698 * 109.47431 * 180.02562 * 21 20 19 23 23 N 1.31130 * 126.54646 * 90.00204 * 22 21 20 24 24 C 1.34492 * 105.61399 * 179.97438 * 23 22 21 25 25 C 1.50700 * 126.29104 * 180.02562 * 24 23 22 26 26 N 1.29954 * 107.42242 * 359.97438 * 24 23 22 27 27 O 1.21293 * 110.25286 * 0.02562 * 26 24 23 28 28 H 1.09000 * 109.47439 * 299.99830 * 1 2 3 29 29 H 1.09001 * 109.47300 * 60.00238 * 1 2 3 30 30 H 1.09002 * 109.47673 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47151 * 239.99943 * 2 1 3 32 32 H 1.09000 * 109.47179 * 120.00296 * 2 1 3 33 33 H 1.08998 * 109.47557 * 29.99483 * 4 3 2 34 34 H 1.09001 * 109.47292 * 149.99896 * 4 3 2 35 35 H 0.97005 * 119.99549 * 179.97438 * 8 7 5 36 36 H 1.08998 * 109.47026 * 60.00404 * 15 13 3 37 37 H 1.08999 * 109.47080 * 299.99709 * 15 13 3 38 38 H 1.09000 * 109.46892 * 60.00233 * 19 17 16 39 39 H 1.08997 * 109.47395 * 300.00449 * 19 17 16 40 40 H 1.09000 * 109.46883 * 60.00404 * 20 19 17 41 41 H 1.08997 * 109.47478 * 300.00575 * 20 19 17 42 42 H 1.09000 * 109.46731 * 60.00349 * 21 20 19 43 43 H 1.08997 * 109.47295 * 300.00724 * 21 20 19 44 44 H 1.08999 * 109.47105 * 269.97611 * 25 24 23 45 45 H 1.09005 * 109.47013 * 29.97723 * 25 24 23 46 46 H 1.08996 * 109.47115 * 149.97626 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6857 1.8350 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1491 2.3896 -2.8780 8 7 5.3913 2.1834 -3.2573 9 14 3.0128 3.4351 -3.9292 10 1 3.1163 4.8554 -3.5081 11 1 3.4058 3.3120 -5.3559 12 1 1.6131 2.9691 -3.7592 13 6 2.2429 2.0164 1.1673 14 8 2.6468 3.1601 1.1673 15 6 1.9922 1.3058 2.4723 16 8 2.3061 2.1957 3.5759 17 6 2.1349 1.7120 4.8163 18 8 1.7364 0.5823 4.9746 19 6 2.4408 2.5775 6.0115 20 6 2.1622 1.7921 7.2946 21 6 2.4733 2.6706 8.5080 22 6 2.1995 1.8968 9.7719 23 7 3.0507 1.1444 10.4266 24 6 2.3697 0.6602 11.4805 25 6 2.9088 -0.2621 12.5435 26 7 1.1617 1.1345 11.4143 27 8 1.0432 1.8471 10.4400 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5817 1.6877 -2.0284 34 1 2.0955 3.1410 -1.1384 35 1 5.7172 2.5733 -4.0836 36 1 2.6228 0.4186 2.5298 37 1 0.9444 1.0113 2.5302 38 1 1.8113 3.4670 5.9865 39 1 3.4894 2.8738 5.9868 40 1 2.7914 0.9024 7.3198 41 1 1.1134 1.4962 7.3191 42 1 1.8444 3.5605 8.4830 43 1 3.5221 2.9661 8.4833 44 1 2.7508 -1.2972 12.2407 45 1 3.9756 -0.0807 12.6749 46 1 2.3900 -0.0753 13.4837 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000061236157.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:56 Heat of formation + Delta-G solvation = -85.676356 kcal Electronic energy + Delta-G solvation = -28219.698758 eV Core-core repulsion = 23919.073767 eV Total energy + Delta-G solvation = -4300.624991 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -46.63907 -41.75842 -40.60837 -37.84616 -37.21286 -37.00804 -36.35402 -34.87807 -33.65600 -32.06733 -30.95236 -30.26134 -29.58043 -28.45282 -25.16527 -24.52825 -24.27798 -23.76762 -22.18946 -21.56556 -20.21573 -19.17817 -19.13090 -18.98998 -18.40634 -18.07559 -17.89595 -17.42351 -16.86018 -16.56410 -16.07349 -15.93224 -15.49995 -14.90055 -14.88024 -14.77403 -14.50464 -14.49450 -14.17803 -13.95873 -13.82501 -13.76128 -13.48759 -13.43493 -13.35349 -13.16317 -12.85375 -12.67128 -12.56027 -12.42005 -12.28781 -12.12750 -12.10771 -12.01444 -11.81427 -11.74239 -11.70575 -11.64376 -10.91577 -10.82833 -10.77166 -9.52284 -8.33602 -6.39362 0.09904 1.13680 1.15359 1.30035 1.35826 1.38423 1.46727 1.59298 1.84812 2.31684 2.38265 2.69672 3.00706 3.06514 3.40755 3.56893 3.76631 3.91792 3.96374 4.00065 4.06558 4.14660 4.28637 4.36346 4.46130 4.51428 4.54773 4.58247 4.62114 4.69023 4.77001 4.83297 4.86962 4.89740 4.95689 4.98896 5.03843 5.12040 5.21826 5.35332 5.37261 5.45196 5.57225 6.21724 6.51583 6.62354 6.67634 7.13086 7.16266 7.29386 8.83204 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025335 B = 0.001668 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.909796 B =16783.639855 C =17139.966214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 N -0.593 5.593 4 C 0.227 3.773 5 C -0.540 4.540 6 H 0.029 0.971 7 C 0.012 3.988 8 N -0.944 5.944 9 Si 0.948 3.052 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.236 1.236 13 C 0.501 3.499 14 O -0.573 6.573 15 C 0.061 3.939 16 O -0.349 6.349 17 C 0.458 3.542 18 O -0.536 6.536 19 C -0.104 4.104 20 C -0.100 4.100 21 C -0.022 4.022 22 C 0.194 3.806 23 N -0.508 5.508 24 C 0.159 3.841 25 C -0.064 4.064 26 N -0.414 5.414 27 O 0.068 5.932 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.022 0.978 35 H 0.269 0.731 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.142 0.858 43 H 0.134 0.866 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.085 -2.682 26.549 28.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.029 4.029 3 N -0.325 5.325 4 C 0.105 3.895 5 C -0.579 4.579 6 H 0.048 0.952 7 C -0.186 4.186 8 N -0.584 5.584 9 Si 0.770 3.230 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.159 1.159 13 C 0.288 3.712 14 O -0.453 6.453 15 C -0.016 4.016 16 O -0.265 6.265 17 C 0.303 3.697 18 O -0.426 6.426 19 C -0.141 4.141 20 C -0.138 4.138 21 C -0.061 4.061 22 C -0.026 4.026 23 N -0.243 5.243 24 C -0.114 4.114 25 C -0.122 4.122 26 N -0.126 5.126 27 O 0.012 5.988 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.113 0.887 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.127 0.873 37 H 0.142 0.858 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.160 0.840 43 H 0.152 0.848 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.105 -2.799 27.098 29.418 hybrid contribution 0.214 0.139 -1.038 1.069 sum -10.891 -2.661 26.059 28.369 Atomic orbital electron populations 1.22176 0.93677 1.03869 1.02305 1.21876 0.95884 0.80838 1.04320 1.47970 1.63901 1.15280 1.05371 1.19365 0.94993 0.93202 0.81956 1.21569 0.97095 1.32353 1.06874 0.95222 1.25851 0.96722 0.97132 0.98922 1.70052 1.17430 1.46483 1.24448 0.85720 0.80516 0.79034 0.77725 1.20102 1.20096 1.15908 1.20569 0.78035 0.86697 0.85877 1.90676 1.46774 1.20073 1.87735 1.22759 1.04632 0.91974 0.82199 1.86578 1.79060 1.45464 1.15408 1.24681 0.73114 0.87289 0.84590 1.90668 1.43808 1.21379 1.86751 1.21489 1.07883 0.98706 0.85995 1.21296 1.03451 0.98188 0.90910 1.20493 1.07409 0.96793 0.81389 1.29451 0.80198 0.95198 0.97763 1.71947 1.31683 1.13675 1.06951 1.26614 0.86747 1.00454 0.97545 1.20335 1.02832 0.96101 0.92958 1.74634 1.21458 1.10769 1.05710 1.85254 1.36424 1.49528 1.27556 0.92188 0.92843 0.88668 0.90114 0.88958 0.92741 0.95982 0.92242 0.87254 0.85846 0.83794 0.84697 0.91764 0.90747 0.84021 0.84785 0.88246 0.87917 0.88381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.42 10.24 71.98 0.74 -2.68 16 2 C 0.09 2.61 5.93 86.38 0.51 3.12 16 3 N -0.59 -23.31 2.46 -826.17 -2.03 -25.34 16 4 C 0.23 10.75 4.23 85.63 0.36 11.11 16 5 C -0.54 -31.38 9.94 25.60 0.25 -31.12 16 6 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 7 C 0.01 0.70 5.47 84.66 0.46 1.16 16 8 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 9 Si 0.95 43.60 27.47 68.60 1.88 45.48 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 13 C 0.50 20.06 7.75 87.66 0.68 20.74 16 14 O -0.57 -28.65 16.08 15.75 0.25 -28.39 16 15 C 0.06 1.78 4.50 71.23 0.32 2.10 16 16 O -0.35 -10.05 9.75 -45.07 -0.44 -10.49 16 17 C 0.46 10.09 7.96 71.24 0.57 10.65 16 18 O -0.54 -14.18 15.73 21.97 0.35 -13.83 16 19 C -0.10 -1.10 5.81 29.85 0.17 -0.93 16 20 C -0.10 -1.04 4.49 30.59 0.14 -0.91 16 21 C -0.02 -0.14 5.84 29.85 0.17 0.04 16 22 C 0.19 2.88 7.77 88.38 0.69 3.56 16 23 N -0.51 -9.61 11.55 -303.19 -3.50 -13.12 16 24 C 0.16 2.92 8.22 138.46 1.14 4.06 16 25 C -0.06 -0.66 10.51 71.24 0.75 0.09 16 26 N -0.41 -8.62 12.16 -60.32 -0.73 -9.36 16 27 O 0.07 1.24 11.31 74.85 0.85 2.08 16 28 H 0.06 1.17 7.22 -2.39 -0.02 1.16 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 2.42 8.07 -2.38 -0.02 2.40 16 32 H 0.09 2.13 6.44 -2.39 -0.02 2.12 16 33 H 0.05 2.35 7.13 -2.39 -0.02 2.33 16 34 H 0.02 1.12 6.85 -2.39 -0.02 1.11 16 35 H 0.27 15.63 8.31 -92.70 -0.77 14.86 16 36 H 0.11 2.90 7.39 -2.39 -0.02 2.88 16 37 H 0.12 2.87 7.18 -2.39 -0.02 2.85 16 38 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 41 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 42 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 46 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -87.74 395.99 4.81 -82.93 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.94 Total: 7.92 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 6.95 Total: 20.99 kcal Atomic # 7 Polarization: -100.72 SS G_CDS: -5.97 Total: -106.68 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: 1.01 Total: -50.63 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -87.74 4.81 -82.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000061236157.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.750 kcal (2) G-P(sol) polarization free energy of solvation -87.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds