Wall clock time and date at job start Sat Apr 11 2020 05:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47283 * 2 1 4 4 N 1.46497 * 109.47217 * 239.99605 * 2 1 3 5 5 C 1.39988 * 119.99649 * 85.00063 * 4 2 1 6 6 C 1.40433 * 125.97860 * 0.02876 * 5 4 2 7 7 C 1.35246 * 107.86364 * 179.73534 * 6 5 4 8 8 N 1.34954 * 107.86319 * 0.42248 * 7 6 5 9 9 C 1.46502 * 125.97320 * 179.83727 * 8 7 6 10 10 C 1.50706 * 109.46990 * 124.71642 * 9 8 7 11 11 H 1.07997 * 119.99901 * 359.97438 * 10 9 8 12 12 C 1.37877 * 119.99896 * 180.02562 * 10 9 8 13 13 N 1.31510 * 120.00056 * 179.72182 * 12 10 9 14 14 Si 1.86803 * 119.99907 * 359.97438 * 12 10 9 15 15 H 1.48495 * 109.47092 * 269.72321 * 14 12 10 16 16 H 1.48498 * 109.47239 * 29.72959 * 14 12 10 17 17 H 1.48503 * 109.46702 * 149.72941 * 14 12 10 18 18 N 1.31220 * 125.97456 * 180.02562 * 5 4 2 19 19 C 1.50699 * 109.46931 * 120.00104 * 2 1 3 20 20 N 1.30741 * 126.36742 * 73.05872 * 19 2 1 21 21 N 1.28417 * 110.64814 * 180.02562 * 20 19 2 22 22 N 1.28944 * 110.20774 * 0.02562 * 21 20 19 23 23 N 1.35071 * 126.36402 * 252.74929 * 19 2 1 24 24 C 1.40271 * 127.38534 * 359.97438 * 23 19 2 25 25 C 1.38818 * 120.06051 * 42.14574 * 24 23 19 26 26 C 1.38126 * 119.93174 * 179.76575 * 25 24 23 27 27 C 1.38278 * 120.06426 * 0.51155 * 26 25 24 28 28 C 1.38277 * 120.12832 * 359.73300 * 27 26 25 29 29 C 1.38122 * 120.06797 * 0.02562 * 28 27 26 30 30 H 1.09002 * 109.46886 * 60.00145 * 1 2 3 31 31 H 1.09009 * 109.47282 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47532 * 299.99957 * 1 2 3 33 33 H 0.96997 * 120.00940 * 265.00088 * 4 2 1 34 34 H 1.08001 * 126.06604 * 359.97438 * 6 5 4 35 35 H 1.08003 * 126.06507 * 180.25921 * 7 6 5 36 36 H 1.08999 * 109.47179 * 4.71965 * 9 8 7 37 37 H 1.08993 * 109.47566 * 244.71268 * 9 8 7 38 38 H 0.97001 * 120.00683 * 180.26929 * 13 12 10 39 39 H 1.07998 * 120.03779 * 359.97438 * 25 24 23 40 40 H 1.07998 * 119.96872 * 180.24488 * 26 25 24 41 41 H 1.08001 * 119.93565 * 179.76984 * 27 26 25 42 42 H 1.07997 * 119.96837 * 180.02562 * 28 27 26 43 43 H 1.07993 * 120.03504 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1520 0.0077 -2.4020 6 6 1.8566 1.3653 -2.6062 7 6 2.1234 1.6579 -3.8994 8 7 2.5618 0.5301 -4.4971 9 6 2.9598 0.3990 -5.9009 10 6 4.3599 -0.1534 -5.9766 11 1 4.8994 -0.3834 -5.0697 12 6 4.9524 -0.3642 -7.2036 13 7 6.1762 -0.8411 -7.2696 14 14 4.0194 0.0343 -8.7721 15 1 3.2631 -1.1640 -9.2162 16 1 3.0735 1.1498 -8.5156 17 1 4.9803 0.4337 -9.8316 18 7 2.5754 -0.4918 -3.5391 19 6 2.0323 -0.7104 1.2305 20 7 2.0014 -1.9992 1.4484 21 7 2.5085 -2.2768 2.5951 22 7 2.8945 -1.1969 3.1846 23 7 2.6033 -0.1346 2.3106 24 6 2.8495 1.2307 2.5177 25 6 1.8910 2.1712 2.1659 26 6 2.1342 3.5147 2.3755 27 6 3.3352 3.9237 2.9253 28 6 4.2938 2.9894 3.2720 29 6 4.0543 1.6443 3.0694 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2491 -1.6318 -1.1526 34 1 1.4861 2.0544 -1.8617 35 1 2.0041 2.6223 -4.3708 36 1 2.9289 1.3775 -6.3803 37 1 2.2743 -0.2774 -6.4113 38 1 6.5946 -0.9858 -8.1327 39 1 0.9547 1.8527 1.7319 40 1 1.3873 4.2466 2.1056 41 1 3.5247 4.9750 3.0848 42 1 5.2308 3.3117 3.7016 43 1 4.8032 0.9150 3.3408 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086154821.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:00 Heat of formation + Delta-G solvation = 220.286231 kcal Electronic energy + Delta-G solvation = -28140.759531 eV Core-core repulsion = 24225.296495 eV Total energy + Delta-G solvation = -3915.463036 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.51970 -41.80680 -40.43363 -38.14684 -36.21775 -35.45548 -34.03076 -32.73921 -32.13700 -31.45774 -31.08920 -30.23074 -28.65576 -26.30758 -25.47530 -24.50319 -23.79979 -23.07023 -22.48562 -21.56790 -20.88367 -19.59106 -19.04557 -18.12739 -17.96634 -17.53675 -17.41526 -16.57927 -16.13819 -16.05437 -15.62653 -15.51331 -15.36488 -14.94319 -14.72946 -14.61209 -14.43906 -14.37173 -14.10097 -13.75924 -13.68357 -13.58241 -13.08110 -12.90777 -12.81013 -12.68799 -12.63781 -12.55012 -12.17916 -12.03462 -11.98097 -11.79165 -11.61649 -11.18744 -11.07577 -10.84949 -10.10639 -9.87704 -9.50161 -8.60701 -8.35605 -6.45609 -0.73139 0.23431 0.27378 0.51375 0.89934 1.35837 1.36224 1.41429 1.49240 1.70394 2.23507 2.30513 2.49390 2.54722 2.67015 2.97332 3.18727 3.54624 3.73800 3.88120 3.90839 4.00677 4.02987 4.07035 4.15526 4.29770 4.33711 4.40059 4.43188 4.58925 4.69698 4.78320 4.89031 4.92916 4.94527 5.03172 5.13642 5.19510 5.24408 5.28160 5.36825 5.43231 5.56184 5.83817 6.02553 6.20463 6.52498 6.62508 6.63920 7.10267 7.17488 7.31404 8.81839 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013735 B = 0.002630 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.098265 B =10642.641325 C =11202.768980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.256 3.744 3 H 0.123 0.877 4 N -0.718 5.718 5 C 0.311 3.689 6 C -0.318 4.318 7 C 0.072 3.928 8 N -0.356 5.356 9 C 0.242 3.758 10 C -0.544 4.544 11 H 0.020 0.980 12 C 0.009 3.991 13 N -0.947 5.947 14 Si 0.959 3.041 15 H -0.269 1.269 16 H -0.224 1.224 17 H -0.279 1.279 18 N -0.392 5.392 19 C 0.248 3.752 20 N -0.339 5.339 21 N -0.058 5.058 22 N -0.091 5.091 23 N -0.312 5.312 24 C 0.081 3.919 25 C -0.115 4.115 26 C -0.091 4.091 27 C -0.094 4.094 28 C -0.104 4.104 29 C -0.112 4.112 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.400 0.600 34 H 0.179 0.821 35 H 0.209 0.791 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.271 0.729 39 H 0.151 0.849 40 H 0.176 0.824 41 H 0.167 0.833 42 H 0.157 0.843 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.902 17.845 20.475 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.146 3.854 3 H 0.140 0.860 4 N -0.361 5.361 5 C 0.054 3.946 6 C -0.350 4.350 7 C -0.077 4.077 8 N -0.136 5.136 9 C 0.122 3.878 10 C -0.582 4.582 11 H 0.039 0.961 12 C -0.189 4.189 13 N -0.586 5.586 14 Si 0.779 3.221 15 H -0.194 1.194 16 H -0.146 1.146 17 H -0.204 1.204 18 N -0.224 5.224 19 C -0.030 4.030 20 N -0.190 5.190 21 N -0.053 5.053 22 N -0.075 5.075 23 N -0.103 5.103 24 C -0.009 4.009 25 C -0.136 4.136 26 C -0.110 4.110 27 C -0.112 4.112 28 C -0.122 4.122 29 C -0.132 4.132 30 H 0.115 0.885 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.235 0.765 34 H 0.196 0.804 35 H 0.226 0.774 36 H 0.102 0.898 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.169 0.831 40 H 0.193 0.807 41 H 0.185 0.815 42 H 0.175 0.825 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.109 15.666 20.468 28.918 hybrid contribution 0.554 -0.070 -0.403 0.688 sum -12.555 15.596 20.066 28.346 Atomic orbital electron populations 1.22382 0.90415 1.04238 1.05053 1.19474 0.96030 0.94664 0.75190 0.85956 1.43381 1.76557 1.11900 1.04228 1.19404 0.96430 0.92089 0.86669 1.21204 1.21616 0.94347 0.97809 1.23187 0.97330 0.93205 0.93968 1.48389 1.49628 1.06245 1.09332 1.19758 0.94176 0.99445 0.74445 1.21290 0.99134 1.44466 0.93355 0.96112 1.26000 0.95783 0.93770 1.03322 1.70070 1.15703 1.45899 1.26928 0.85578 0.78942 0.80455 0.77101 1.19443 1.14649 1.20420 1.77441 1.31651 1.15051 0.98254 1.26253 0.94256 0.90015 0.92434 1.74367 1.21530 1.12379 1.10771 1.78041 1.07723 1.18571 1.00921 1.82588 1.21147 0.89318 1.14448 1.49027 1.40623 1.08224 1.12387 1.18017 0.98043 0.76726 1.08162 1.21473 0.98245 0.93367 1.00469 1.21559 0.98509 0.94142 0.96743 1.21893 0.92604 1.01741 0.94954 1.21460 1.01341 0.90692 0.98756 1.21187 0.94578 0.98394 0.99079 0.88470 0.91972 0.88834 0.76508 0.80366 0.77415 0.89850 0.94505 0.92016 0.83134 0.80703 0.81526 0.82510 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.30 71.98 0.67 -1.82 16 2 C 0.26 5.42 2.18 44.25 0.10 5.52 16 3 H 0.12 2.13 5.29 -2.39 -0.01 2.11 16 4 N -0.72 -21.78 5.28 -326.98 -1.73 -23.51 16 5 C 0.31 11.16 8.14 133.39 1.09 12.25 16 6 C -0.32 -8.91 9.92 22.11 0.22 -8.69 16 7 C 0.07 2.23 11.43 83.52 0.96 3.18 16 8 N -0.36 -15.25 3.67 -351.84 -1.29 -16.54 16 9 C 0.24 11.09 5.33 85.63 0.46 11.55 16 10 C -0.54 -31.88 9.79 25.60 0.25 -31.63 16 11 H 0.02 1.43 8.06 -2.91 -0.02 1.41 16 12 C 0.01 0.54 5.47 84.66 0.46 1.00 16 13 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 14 Si 0.96 41.00 27.47 68.60 1.88 42.89 16 15 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 16 H -0.22 -8.05 6.54 99.48 0.65 -7.40 16 17 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 18 N -0.39 -18.20 12.42 -54.54 -0.68 -18.88 16 19 C 0.25 6.35 6.74 138.05 0.93 7.28 16 20 N -0.34 -10.55 11.92 -50.29 -0.60 -11.15 16 21 N -0.06 -1.89 13.39 37.02 0.50 -1.39 16 22 N -0.09 -2.67 13.83 37.02 0.51 -2.16 16 23 N -0.31 -7.61 3.74 -179.11 -0.67 -8.28 16 24 C 0.08 1.48 6.18 38.07 0.24 1.71 16 25 C -0.12 -1.28 8.21 22.38 0.18 -1.10 16 26 C -0.09 -0.53 10.04 22.25 0.22 -0.31 16 27 C -0.09 -0.55 10.04 22.29 0.22 -0.33 16 28 C -0.10 -1.03 10.04 22.25 0.22 -0.81 16 29 C -0.11 -1.87 9.89 22.38 0.22 -1.65 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.09 0.88 7.03 -2.39 -0.02 0.86 16 33 H 0.40 13.60 8.53 -92.71 -0.79 12.81 16 34 H 0.18 3.19 7.45 -2.91 -0.02 3.17 16 35 H 0.21 4.35 8.06 -2.91 -0.02 4.32 16 36 H 0.08 3.25 7.12 -2.39 -0.02 3.23 16 37 H 0.04 1.66 7.57 -2.39 -0.02 1.65 16 38 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 39 H 0.15 1.14 5.74 -2.91 -0.02 1.12 16 40 H 0.18 -0.16 8.06 -2.91 -0.02 -0.19 16 41 H 0.17 -0.05 8.06 -2.91 -0.02 -0.07 16 42 H 0.16 0.86 8.06 -2.91 -0.02 0.84 16 43 H 0.12 2.26 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -85.20 370.80 4.89 -80.31 By element: Atomic # 1 Polarization: 21.60 SS G_CDS: 0.22 Total: 21.82 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 6.44 Total: -3.85 kcal Atomic # 7 Polarization: -137.52 SS G_CDS: -3.66 Total: -141.17 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.88 Total: 42.89 kcal Total: -85.20 4.89 -80.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086154821.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 300.601 kcal (2) G-P(sol) polarization free energy of solvation -85.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 215.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 220.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds