Wall clock time and date at job start Sat Apr 11 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 114.00340 * 2 1 4 4 C 1.52999 * 109.46898 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47446 * 65.00071 * 4 3 2 6 6 C 1.46501 * 119.99721 * 270.00144 * 5 4 3 7 7 C 1.50703 * 109.46735 * 269.99662 * 6 5 4 8 8 H 1.07999 * 120.00228 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99657 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99689 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 120.00232 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47407 * 89.99809 * 11 9 7 13 13 H 1.48503 * 109.46916 * 209.99827 * 11 9 7 14 14 H 1.48502 * 109.46964 * 329.99390 * 11 9 7 15 15 C 1.34767 * 120.00202 * 89.99542 * 5 4 3 16 16 O 1.21285 * 120.00371 * 0.02562 * 15 5 4 17 17 C 1.50702 * 120.00401 * 180.02562 * 15 5 4 18 18 C 1.52995 * 109.47338 * 180.02562 * 17 15 5 19 19 C 1.50702 * 109.46958 * 180.02562 * 18 17 15 20 20 C 1.38263 * 119.93682 * 270.02149 * 19 18 17 21 21 C 1.38176 * 120.09586 * 180.02562 * 20 19 18 22 22 C 1.38664 * 119.97332 * 359.97378 * 21 20 19 23 23 O 1.35948 * 120.06477 * 180.28026 * 22 21 20 24 24 C 1.42895 * 117.00499 * 359.72167 * 23 22 21 25 25 C 1.38915 * 119.86796 * 359.97438 * 22 21 20 26 26 F 1.35098 * 120.04463 * 180.02562 * 25 22 21 27 27 C 1.38254 * 119.93981 * 89.99990 * 19 18 17 28 28 H 1.08993 * 109.47399 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46746 * 300.00430 * 1 2 3 30 30 H 1.08995 * 109.46552 * 59.99744 * 1 2 3 31 31 H 1.08999 * 109.46982 * 59.99852 * 3 2 1 32 32 H 1.09002 * 109.46410 * 300.00126 * 3 2 1 33 33 H 1.09002 * 109.46634 * 304.99541 * 4 3 2 34 34 H 1.09003 * 109.46774 * 185.00048 * 4 3 2 35 35 H 1.09001 * 109.47504 * 29.99705 * 6 5 4 36 36 H 1.08998 * 109.47373 * 150.00167 * 6 5 4 37 37 H 0.97002 * 120.00197 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.46883 * 59.99685 * 17 15 5 39 39 H 1.09007 * 109.46669 * 300.00388 * 17 15 5 40 40 H 1.08994 * 109.47278 * 59.99950 * 18 17 15 41 41 H 1.08994 * 109.47039 * 299.99507 * 18 17 15 42 42 H 1.07999 * 119.95092 * 0.02562 * 20 19 18 43 43 H 1.08008 * 120.01550 * 180.02562 * 21 20 19 44 44 H 1.09001 * 109.46836 * 300.00713 * 24 23 22 45 45 H 1.09001 * 109.46915 * 60.00028 * 24 23 22 46 46 H 1.08996 * 109.47572 * 179.97438 * 24 23 22 47 47 H 1.08004 * 119.98065 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9758 0.5642 -1.2527 6 6 4.1052 -0.8923 -1.3427 7 6 5.5010 -1.2981 -0.9448 8 1 6.2196 -0.5463 -0.6536 9 6 5.8602 -2.6293 -0.9515 10 7 7.0784 -2.9833 -0.6048 11 14 4.6170 -3.9296 -1.4545 12 1 4.7023 -4.1556 -2.9197 13 1 4.9110 -5.1979 -0.7401 14 1 3.2496 -3.4692 -1.1033 15 6 4.2616 1.3334 -2.3217 16 8 4.1549 2.5393 -2.2472 17 6 4.7139 0.6954 -3.6099 18 6 4.9709 1.7828 -4.6550 19 6 5.4226 1.1447 -5.9433 20 6 6.7692 0.9298 -6.1719 21 6 7.1870 0.3454 -7.3522 22 6 6.2548 -0.0268 -8.3089 23 8 6.6634 -0.6071 -9.4685 24 6 8.0693 -0.7982 -9.6381 25 6 4.9022 0.1888 -8.0775 26 9 3.9908 -0.1729 -9.0069 27 6 4.4897 0.7748 -6.8943 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5680 0.8410 34 1 3.9787 2.1763 0.0889 35 1 3.3852 -1.3631 -0.6733 36 1 3.9120 -1.2117 -2.3668 37 1 7.3310 -3.9199 -0.6092 38 1 3.9396 0.0189 -3.9717 39 1 5.6328 0.1356 -3.4350 40 1 5.7454 2.4590 -4.2930 41 1 4.0524 2.3429 -4.8300 42 1 7.4955 1.2191 -5.4268 43 1 8.2392 0.1777 -7.5292 44 1 8.5745 0.1669 -9.5996 45 1 8.4477 -1.4383 -8.8411 46 1 8.2582 -1.2695 -10.6026 47 1 3.4384 0.9430 -6.7130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103214311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:07 Heat of formation + Delta-G solvation = -143.282942 kcal Electronic energy + Delta-G solvation = -29642.101186 eV Core-core repulsion = 25319.058224 eV Total energy + Delta-G solvation = -4323.042962 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.75799 -40.14289 -39.34966 -37.90699 -37.43377 -35.02828 -33.34781 -32.52573 -30.76522 -30.40632 -29.06892 -27.64916 -27.33985 -26.05361 -24.37343 -22.81843 -22.50091 -22.22802 -20.89456 -18.38659 -18.24845 -17.09548 -17.00024 -16.91236 -16.46893 -16.22465 -15.99499 -15.68936 -15.24421 -15.10169 -14.88475 -14.86325 -14.50108 -14.28286 -14.23057 -13.85855 -13.42766 -12.98262 -12.64171 -12.54644 -12.48396 -12.25861 -12.11851 -11.97858 -11.75724 -11.68693 -11.56389 -11.40764 -11.13529 -10.97749 -10.92970 -10.81106 -10.61918 -10.49492 -10.20261 -9.59320 -9.50618 -9.11473 -8.94599 -8.67074 -8.11347 -7.74021 -6.18163 -4.18861 1.10824 1.19914 3.01248 3.22453 3.30943 3.32297 3.34957 3.49181 3.84948 4.06157 4.18661 4.32188 4.61536 4.71743 4.88813 4.95209 5.09423 5.13858 5.22515 5.25901 5.29506 5.33485 5.40225 5.43200 5.48960 5.54497 5.56822 5.61939 5.65218 5.74306 5.87328 5.92082 6.06921 6.10038 6.14584 6.24054 6.31500 6.45403 6.58341 6.61961 6.63440 6.87362 7.17428 7.33380 7.39408 7.52068 8.16161 8.44481 8.83869 8.92879 9.42471 10.94430 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003340 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.968858 B = 8380.553903 C = 9646.958545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.048 3.952 4 C 0.121 3.879 5 N -0.583 5.583 6 C 0.210 3.790 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.078 3.922 10 N -0.893 5.893 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.260 1.260 15 C 0.518 3.482 16 O -0.578 6.578 17 C -0.133 4.133 18 C -0.060 4.060 19 C -0.080 4.080 20 C -0.080 4.080 21 C -0.178 4.178 22 C 0.085 3.915 23 O -0.313 6.313 24 C 0.027 3.973 25 C 0.068 3.932 26 F -0.136 7.136 27 C -0.113 4.113 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.027 0.973 37 H 0.265 0.735 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.056 0.944 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 6.603 -10.877 13.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.030 4.030 4 C -0.003 4.003 5 N -0.312 5.312 6 C 0.089 3.911 7 C -0.578 4.578 8 H 0.095 0.905 9 C -0.126 4.126 10 N -0.531 5.531 11 Si 0.693 3.307 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.184 1.184 15 C 0.307 3.693 16 O -0.459 6.459 17 C -0.173 4.173 18 C -0.098 4.098 19 C -0.081 4.081 20 C -0.099 4.099 21 C -0.196 4.196 22 C 0.039 3.961 23 O -0.227 6.227 24 C -0.068 4.068 25 C 0.048 3.952 26 F -0.115 7.115 27 C -0.132 4.132 28 H 0.100 0.900 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.045 0.955 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.100 0.900 41 H 0.095 0.905 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.118 0.882 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.170 6.776 -10.994 13.570 hybrid contribution -0.589 -0.910 -0.245 1.112 sum -4.759 5.865 -11.239 13.541 Atomic orbital electron populations 1.22686 0.82094 1.02335 0.99355 1.88020 1.18749 1.27789 1.95254 1.23052 0.95315 0.84733 0.99904 1.21353 0.90880 0.99865 0.88167 1.47848 1.63929 1.09000 1.10409 1.19854 0.98175 0.75496 0.97585 1.21411 0.96034 0.93674 1.46695 0.90510 1.24836 0.95022 0.98276 0.94433 1.69894 1.18151 1.17437 1.47638 0.86976 0.82767 0.81720 0.79226 1.19939 1.21004 1.18401 1.20491 0.76505 0.86607 0.85656 1.90588 1.55872 1.14669 1.84819 1.21642 1.04603 0.98746 0.92284 1.20322 1.02728 0.96809 0.89910 1.19761 0.92727 0.99482 0.96118 1.21014 0.95718 0.96939 0.96198 1.21134 0.99244 1.04403 0.94848 1.18976 0.92117 0.97495 0.87497 1.86105 1.25836 1.75839 1.34919 1.23096 0.79168 1.01425 1.03150 1.16927 0.83526 1.05420 0.89290 1.91479 1.65647 1.90035 1.64312 1.20923 1.01167 0.99479 0.91653 0.89981 0.94552 0.94562 0.93062 0.93295 0.89337 0.89184 0.93551 0.95549 0.92475 0.89411 0.87274 0.89964 0.90458 0.84608 0.84518 0.92509 0.92286 0.88155 0.84054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.38 -6.34 9.53 -35.23 -0.34 -6.68 16 3 C 0.05 0.74 6.28 37.16 0.23 0.97 16 4 C 0.12 2.15 5.81 -4.04 -0.02 2.13 16 5 N -0.58 -11.76 2.42 -175.06 -0.42 -12.18 16 6 C 0.21 4.69 3.85 -5.19 -0.02 4.67 16 7 C -0.54 -14.14 9.84 -34.44 -0.34 -14.48 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 10 N -0.89 -25.91 13.96 55.43 0.77 -25.13 16 11 Si 0.87 20.19 27.47 -169.99 -4.67 15.52 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 15 C 0.52 10.10 7.67 -10.99 -0.08 10.02 16 16 O -0.58 -11.95 15.56 5.55 0.09 -11.86 16 17 C -0.13 -2.25 4.23 -27.88 -0.12 -2.37 16 18 C -0.06 -0.86 4.63 -27.88 -0.13 -0.99 16 19 C -0.08 -1.08 5.13 -104.61 -0.54 -1.61 16 20 C -0.08 -1.01 9.69 -39.60 -0.38 -1.40 16 21 C -0.18 -2.12 9.04 -39.45 -0.36 -2.48 16 22 C 0.08 1.15 6.69 -39.17 -0.26 0.88 16 23 O -0.31 -4.00 10.36 -19.58 -0.20 -4.20 16 24 C 0.03 0.22 9.81 101.05 0.99 1.21 16 25 C 0.07 0.97 7.31 -39.30 -0.29 0.69 16 26 F -0.14 -2.05 17.11 2.25 0.04 -2.01 16 27 C -0.11 -1.50 9.67 -39.54 -0.38 -1.89 16 28 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 34 H 0.09 1.54 7.42 -51.93 -0.39 1.16 16 35 H 0.05 1.08 6.17 -51.93 -0.32 0.76 16 36 H 0.03 0.58 5.87 -51.93 -0.30 0.27 16 37 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.09 1.42 7.40 -51.93 -0.38 1.03 16 39 H 0.11 2.02 8.00 -51.92 -0.42 1.60 16 40 H 0.08 1.18 8.04 -51.93 -0.42 0.77 16 41 H 0.08 1.07 8.04 -51.93 -0.42 0.65 16 42 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.14 1.28 6.30 -52.48 -0.33 0.95 16 44 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 45 H 0.06 0.45 7.65 -51.93 -0.40 0.05 16 46 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.14 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 395.29 15.07 5.96 5.96 Total: -1.00 -32.03 395.29 -6.62 -38.65 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.16 Total: 3.08 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.68 Total: -1.14 kcal Atomic # 7 Polarization: -37.67 SS G_CDS: 0.35 Total: -37.32 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.45 Total: -22.75 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.01 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.03 -6.62 -38.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.632 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds