Wall clock time and date at job start Sat Apr 11 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42901 * 114.00340 * 2 1 4 4 C 1.52999 * 109.46898 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47446 * 65.00071 * 4 3 2 6 6 C 1.46501 * 119.99721 * 270.00144 * 5 4 3 7 7 C 1.50703 * 109.46735 * 269.99662 * 6 5 4 8 8 H 1.07999 * 120.00228 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99657 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99689 * 179.97438 * 9 7 6 11 11 Si 1.86793 * 120.00232 * 0.02562 * 9 7 6 12 12 H 1.48496 * 109.47407 * 89.99809 * 11 9 7 13 13 H 1.48503 * 109.46916 * 209.99827 * 11 9 7 14 14 H 1.48502 * 109.46964 * 329.99390 * 11 9 7 15 15 C 1.34767 * 120.00202 * 89.99542 * 5 4 3 16 16 O 1.21285 * 120.00371 * 0.02562 * 15 5 4 17 17 C 1.50702 * 120.00401 * 180.02562 * 15 5 4 18 18 C 1.52995 * 109.47338 * 180.02562 * 17 15 5 19 19 C 1.50702 * 109.46958 * 180.02562 * 18 17 15 20 20 C 1.38263 * 119.93682 * 270.02149 * 19 18 17 21 21 C 1.38176 * 120.09586 * 180.02562 * 20 19 18 22 22 C 1.38664 * 119.97332 * 359.97378 * 21 20 19 23 23 O 1.35948 * 120.06477 * 180.28026 * 22 21 20 24 24 C 1.42895 * 117.00499 * 359.72167 * 23 22 21 25 25 C 1.38915 * 119.86796 * 359.97438 * 22 21 20 26 26 F 1.35098 * 120.04463 * 180.02562 * 25 22 21 27 27 C 1.38254 * 119.93981 * 89.99990 * 19 18 17 28 28 H 1.08993 * 109.47399 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46746 * 300.00430 * 1 2 3 30 30 H 1.08995 * 109.46552 * 59.99744 * 1 2 3 31 31 H 1.08999 * 109.46982 * 59.99852 * 3 2 1 32 32 H 1.09002 * 109.46410 * 300.00126 * 3 2 1 33 33 H 1.09002 * 109.46634 * 304.99541 * 4 3 2 34 34 H 1.09003 * 109.46774 * 185.00048 * 4 3 2 35 35 H 1.09001 * 109.47504 * 29.99705 * 6 5 4 36 36 H 1.08998 * 109.47373 * 150.00167 * 6 5 4 37 37 H 0.97002 * 120.00197 * 179.97438 * 10 9 7 38 38 H 1.08999 * 109.46883 * 59.99685 * 17 15 5 39 39 H 1.09007 * 109.46669 * 300.00388 * 17 15 5 40 40 H 1.08994 * 109.47278 * 59.99950 * 18 17 15 41 41 H 1.08994 * 109.47039 * 299.99507 * 18 17 15 42 42 H 1.07999 * 119.95092 * 0.02562 * 20 19 18 43 43 H 1.08008 * 120.01550 * 180.02562 * 21 20 19 44 44 H 1.09001 * 109.46836 * 300.00713 * 24 23 22 45 45 H 1.09001 * 109.46915 * 60.00028 * 24 23 22 46 46 H 1.08996 * 109.47572 * 179.97438 * 24 23 22 47 47 H 1.08004 * 119.98065 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 3.5356 1.1845 -0.0006 5 7 3.9758 0.5642 -1.2527 6 6 4.1052 -0.8923 -1.3427 7 6 5.5010 -1.2981 -0.9448 8 1 6.2196 -0.5463 -0.6536 9 6 5.8602 -2.6293 -0.9515 10 7 7.0784 -2.9833 -0.6048 11 14 4.6170 -3.9296 -1.4545 12 1 4.7023 -4.1556 -2.9197 13 1 4.9110 -5.1979 -0.7401 14 1 3.2496 -3.4692 -1.1033 15 6 4.2616 1.3334 -2.3217 16 8 4.1549 2.5393 -2.2472 17 6 4.7139 0.6954 -3.6099 18 6 4.9709 1.7828 -4.6550 19 6 5.4226 1.1447 -5.9433 20 6 6.7692 0.9298 -6.1719 21 6 7.1870 0.3454 -7.3522 22 6 6.2548 -0.0268 -8.3089 23 8 6.6634 -0.6071 -9.4685 24 6 8.0693 -0.7982 -9.6381 25 6 4.9022 0.1888 -8.0775 26 9 3.9908 -0.1729 -9.0069 27 6 4.4897 0.7748 -6.8943 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 1.6888 1.8463 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 3.8515 0.5680 0.8410 34 1 3.9787 2.1763 0.0889 35 1 3.3852 -1.3631 -0.6733 36 1 3.9120 -1.2117 -2.3668 37 1 7.3310 -3.9199 -0.6092 38 1 3.9396 0.0189 -3.9717 39 1 5.6328 0.1356 -3.4350 40 1 5.7454 2.4590 -4.2930 41 1 4.0524 2.3429 -4.8300 42 1 7.4955 1.2191 -5.4268 43 1 8.2392 0.1777 -7.5292 44 1 8.5745 0.1669 -9.5996 45 1 8.4477 -1.4383 -8.8411 46 1 8.2582 -1.2695 -10.6026 47 1 3.4384 0.9430 -6.7130 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103214311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:06 Heat of formation + Delta-G solvation = -162.199861 kcal Electronic energy + Delta-G solvation = -29642.921486 eV Core-core repulsion = 25319.058224 eV Total energy + Delta-G solvation = -4323.863261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.84818 -41.17600 -40.77959 -38.94083 -38.60100 -36.66012 -34.67349 -34.39268 -31.81213 -31.71919 -30.26157 -29.28466 -28.22630 -27.12768 -25.56553 -24.34961 -23.79448 -23.51405 -22.00486 -19.81251 -19.31216 -19.07096 -18.25877 -17.97236 -17.62991 -17.43395 -17.15111 -17.00388 -16.70180 -16.17432 -16.05506 -15.98449 -15.80895 -15.65969 -15.18630 -15.10324 -14.76582 -14.46402 -14.16066 -13.83077 -13.72011 -13.62774 -13.38138 -13.07879 -13.02111 -12.93195 -12.74966 -12.63099 -12.47213 -12.38570 -12.13427 -12.03351 -11.95273 -11.84948 -11.84388 -11.64549 -10.81387 -10.72597 -10.51325 -9.94994 -9.39272 -9.13004 -8.27745 -6.33027 0.10845 0.18607 1.39569 1.42604 1.52576 1.76915 2.18540 2.28807 2.36405 2.55273 2.92661 3.07698 3.18274 3.58044 3.72223 3.92070 4.06373 4.14923 4.18818 4.23945 4.30383 4.32265 4.37451 4.38066 4.41678 4.51212 4.54556 4.56952 4.62218 4.70414 4.72740 4.83981 4.85431 4.89829 4.93579 4.93735 5.06238 5.09210 5.17089 5.23942 5.49735 5.56475 5.64044 5.72789 6.20927 6.27110 6.28989 6.65984 6.73784 7.27266 7.38171 8.88261 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009730 B = 0.003340 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.968858 B = 8380.553903 C = 9646.958545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.411 6.411 3 C 0.058 3.942 4 C 0.114 3.886 5 N -0.591 5.591 6 C 0.225 3.775 7 C -0.536 4.536 8 H 0.034 0.966 9 C 0.025 3.975 10 N -0.941 5.941 11 Si 0.930 3.070 12 H -0.263 1.263 13 H -0.285 1.285 14 H -0.243 1.243 15 C 0.514 3.486 16 O -0.590 6.590 17 C -0.128 4.128 18 C -0.047 4.047 19 C -0.090 4.090 20 C -0.084 4.084 21 C -0.175 4.175 22 C 0.081 3.919 23 O -0.333 6.333 24 C 0.016 3.984 25 C 0.043 3.957 26 F -0.146 7.146 27 C -0.111 4.111 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.045 0.955 36 H 0.039 0.961 37 H 0.267 0.733 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.146 0.854 43 H 0.164 0.836 44 H 0.072 0.928 45 H 0.065 0.935 46 H 0.121 0.879 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.445 6.411 -11.763 14.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.330 6.330 3 C -0.020 4.020 4 C -0.009 4.009 5 N -0.320 5.320 6 C 0.103 3.897 7 C -0.575 4.575 8 H 0.053 0.947 9 C -0.174 4.174 10 N -0.580 5.580 11 Si 0.754 3.246 12 H -0.188 1.188 13 H -0.211 1.211 14 H -0.166 1.166 15 C 0.304 3.696 16 O -0.473 6.473 17 C -0.168 4.168 18 C -0.085 4.085 19 C -0.091 4.091 20 C -0.102 4.102 21 C -0.193 4.193 22 C 0.035 3.965 23 O -0.248 6.248 24 C -0.078 4.078 25 C 0.024 3.976 26 F -0.124 7.124 27 C -0.130 4.130 28 H 0.109 0.891 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.164 0.836 43 H 0.181 0.819 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.139 0.861 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.428 6.609 -11.882 14.640 hybrid contribution -0.109 -0.790 0.051 0.799 sum -5.537 5.819 -11.831 14.300 Atomic orbital electron populations 1.22888 0.79893 1.03448 1.00707 1.87956 1.21213 1.28324 1.95521 1.22911 0.93211 0.84756 1.01083 1.21501 0.93078 0.99450 0.86892 1.47909 1.64283 1.08280 1.11521 1.19550 0.95389 0.76885 0.97878 1.21550 0.97128 0.92865 1.45923 0.94741 1.25643 0.96752 1.00566 0.94439 1.70036 1.20425 1.18037 1.49542 0.85957 0.80868 0.78550 0.79251 1.18823 1.21109 1.16630 1.20915 0.75999 0.86510 0.86212 1.90572 1.56382 1.15148 1.85157 1.21627 1.03823 0.99489 0.91850 1.20178 1.02934 0.95873 0.89528 1.19685 0.93217 1.00363 0.95791 1.21249 0.95739 0.96531 0.96720 1.21387 1.00391 1.03523 0.94036 1.19167 0.92132 0.97179 0.88056 1.86087 1.28478 1.75602 1.34585 1.23428 0.77073 1.02705 1.04572 1.17197 0.84015 1.06732 0.89700 1.91445 1.66023 1.90288 1.64688 1.21039 1.01869 0.98868 0.91227 0.89080 0.92596 0.93769 0.90143 0.93667 0.90430 0.88990 0.93727 0.94263 0.92377 0.88386 0.89046 0.90304 0.89881 0.83582 0.81906 0.90948 0.91660 0.86087 0.82807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.41 -12.94 9.53 -148.98 -1.42 -14.36 16 3 C 0.06 1.69 6.28 71.98 0.45 2.14 16 4 C 0.11 4.01 5.81 86.38 0.50 4.51 16 5 N -0.59 -23.70 2.42 -826.16 -2.00 -25.70 16 6 C 0.23 9.91 3.85 85.63 0.33 10.24 16 7 C -0.54 -28.55 9.84 25.60 0.25 -28.30 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 9 C 0.03 1.36 5.47 84.66 0.46 1.82 16 10 N -0.94 -55.60 13.96 21.45 0.30 -55.30 16 11 Si 0.93 41.02 27.47 68.60 1.88 42.90 16 12 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 13 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 14 H -0.24 -9.99 6.54 99.48 0.65 -9.34 16 15 C 0.51 19.83 7.67 87.66 0.67 20.50 16 16 O -0.59 -24.09 15.56 -3.04 -0.05 -24.14 16 17 C -0.13 -4.27 4.23 29.85 0.13 -4.14 16 18 C -0.05 -1.31 4.63 29.85 0.14 -1.18 16 19 C -0.09 -2.32 5.13 -19.85 -0.10 -2.42 16 20 C -0.08 -2.02 9.69 22.26 0.22 -1.81 16 21 C -0.17 -3.89 9.04 22.36 0.20 -3.69 16 22 C 0.08 2.09 6.69 22.53 0.15 2.24 16 23 O -0.33 -8.09 10.36 -92.97 -0.96 -9.06 16 24 C 0.02 0.23 9.81 113.37 1.11 1.34 16 25 C 0.04 1.21 7.31 22.45 0.16 1.37 16 26 F -0.15 -4.35 17.11 44.97 0.77 -3.58 16 27 C -0.11 -2.85 9.67 22.29 0.22 -2.63 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 2.86 8.07 -2.39 -0.02 2.84 16 34 H 0.09 3.15 7.42 -2.39 -0.02 3.13 16 35 H 0.04 2.01 6.17 -2.39 -0.01 2.00 16 36 H 0.04 1.64 5.87 -2.39 -0.01 1.63 16 37 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.10 3.04 7.40 -2.39 -0.02 3.02 16 39 H 0.09 3.39 8.00 -2.38 -0.02 3.38 16 40 H 0.08 2.23 8.04 -2.39 -0.02 2.21 16 41 H 0.08 2.20 8.04 -2.39 -0.02 2.18 16 42 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 43 H 0.16 2.64 6.30 -2.91 -0.02 2.62 16 44 H 0.07 0.80 7.67 -2.39 -0.02 0.78 16 45 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 46 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -69.39 395.29 5.58 -63.81 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.91 Total: 23.57 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 6.14 Total: 1.85 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.70 Total: -81.00 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: -2.43 Total: -47.55 kcal Atomic # 9 Polarization: -4.35 SS G_CDS: 0.77 Total: -3.58 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 1.88 Total: 42.90 kcal Total: -69.39 5.58 -63.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103214311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.385 kcal (2) G-P(sol) polarization free energy of solvation -69.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds