Wall clock time and date at job start Sat Apr 11 2020 05:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 113.99850 * 2 1 4 4 C 1.53002 * 109.46762 * 180.02562 * 3 2 1 5 5 O 1.42893 * 109.47220 * 65.00448 * 4 3 2 6 6 C 1.42904 * 114.00105 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47251 * 179.97438 * 6 5 4 8 8 C 1.37860 * 119.93820 * 359.72440 * 7 6 5 9 9 C 1.39634 * 119.87486 * 179.79041 * 8 7 6 10 10 C 1.47730 * 120.11350 * 180.20597 * 9 8 7 11 11 O 1.21565 * 120.00306 * 321.04807 * 10 9 8 12 12 N 1.34776 * 119.99622 * 141.04964 * 10 9 8 13 13 C 1.46498 * 120.00279 * 4.87102 * 12 10 9 14 14 C 1.46501 * 120.00009 * 184.87774 * 12 10 9 15 15 H 1.09006 * 109.47055 * 359.97438 * 14 12 10 16 16 C 1.52994 * 109.47381 * 119.99546 * 14 12 10 17 17 C 1.50697 * 109.46987 * 239.99829 * 14 12 10 18 18 H 1.07999 * 119.99774 * 359.97438 * 17 14 12 19 19 C 1.37881 * 119.99999 * 180.02562 * 17 14 12 20 20 N 1.31512 * 119.99878 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99919 * 180.02562 * 19 17 14 22 22 H 1.48492 * 109.47520 * 59.99466 * 21 19 17 23 23 H 1.48500 * 109.47112 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46841 * 299.99024 * 21 19 17 25 25 C 1.39667 * 119.76736 * 0.50965 * 9 8 7 26 26 C 1.37817 * 119.87688 * 359.72249 * 25 9 8 27 27 C 1.38631 * 119.94068 * 180.02562 * 7 6 5 28 28 F 1.35098 * 119.88070 * 359.97438 * 27 7 6 29 29 H 1.09002 * 109.46940 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47119 * 299.99572 * 1 2 3 31 31 H 1.09009 * 109.47100 * 59.99722 * 1 2 3 32 32 H 1.08998 * 109.46611 * 60.00337 * 3 2 1 33 33 H 1.08997 * 109.47385 * 300.00069 * 3 2 1 34 34 H 1.09001 * 109.47472 * 305.00242 * 4 3 2 35 35 H 1.09003 * 109.46654 * 184.99960 * 4 3 2 36 36 H 1.09001 * 109.47061 * 300.00004 * 6 5 4 37 37 H 1.08998 * 109.47030 * 60.00132 * 6 5 4 38 38 H 1.07996 * 120.06239 * 0.02562 * 8 7 6 39 39 H 1.09005 * 109.46892 * 85.57129 * 13 12 10 40 40 H 1.09003 * 109.47343 * 205.57780 * 13 12 10 41 41 H 1.09007 * 109.47104 * 325.57650 * 13 12 10 42 42 H 1.08998 * 109.47342 * 59.99738 * 16 14 12 43 43 H 1.09000 * 109.47560 * 180.02562 * 16 14 12 44 44 H 1.09004 * 109.47413 * 299.99893 * 16 14 12 45 45 H 0.96997 * 119.99911 * 180.02562 * 20 19 17 46 46 H 1.07990 * 120.06228 * 179.70413 * 25 9 8 47 47 H 1.08003 * 119.94036 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3812 0.4203 -1.3251 7 6 5.7194 -0.2241 -2.6447 8 6 4.7123 -0.5627 -3.5232 9 6 5.0275 -1.1557 -4.7475 10 6 3.9528 -1.5165 -5.6947 11 8 2.9070 -1.9777 -5.2806 12 7 4.1318 -1.3344 -7.0181 13 6 5.4285 -0.8797 -7.5261 14 6 3.0297 -1.5909 -7.9485 15 1 2.1525 -1.9192 -7.3910 16 6 2.6980 -0.3075 -8.7125 17 6 3.4356 -2.6655 -8.9239 18 1 4.4166 -3.1124 -8.8576 19 6 2.5550 -3.0775 -9.9016 20 7 1.3606 -2.5330 -9.9826 21 14 3.0579 -4.4101 -11.1102 22 1 3.3788 -5.6558 -10.3684 23 1 1.9408 -4.6701 -12.0534 24 1 4.2537 -3.9640 -11.8694 25 6 6.3618 -1.4124 -5.0705 26 6 7.3603 -1.0742 -4.1829 27 6 7.0422 -0.4811 -2.9704 28 9 8.0248 -0.1524 -2.1035 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 3.8515 0.5682 0.8409 35 1 3.9785 2.1766 0.0889 36 1 5.8622 1.3964 -1.2631 37 1 5.7358 -0.2119 -0.5110 38 1 3.6818 -0.3662 -3.2666 39 1 6.0835 -1.7389 -7.6708 40 1 5.2865 -0.3667 -8.4773 41 1 5.8803 -0.1952 -6.8081 42 1 3.5753 0.0205 -9.2700 43 1 1.8777 -0.4982 -9.4045 44 1 2.4044 0.4698 -8.0070 45 1 0.7410 -2.8230 -10.6702 46 1 6.6106 -1.8752 -6.0140 47 1 8.3925 -1.2719 -4.4319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173527998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:17 Heat of formation + Delta-G solvation = -132.748403 kcal Electronic energy + Delta-G solvation = -29599.480909 eV Core-core repulsion = 25276.894759 eV Total energy + Delta-G solvation = -4322.586150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -49.05339 -39.99915 -38.77556 -37.97245 -37.12816 -35.37802 -33.15601 -32.27123 -30.81318 -30.21008 -29.08540 -26.64344 -26.34511 -25.91133 -25.21670 -23.71335 -22.76830 -22.03954 -20.82629 -18.72923 -17.67894 -17.32020 -17.02656 -16.78564 -16.40745 -16.08053 -16.00618 -15.54518 -15.39575 -15.31577 -15.25165 -14.57496 -14.37451 -14.24346 -13.89150 -13.50305 -13.28727 -13.16345 -12.67774 -12.59228 -12.54021 -12.24559 -12.10345 -12.01047 -11.56571 -11.51563 -11.39796 -11.23355 -11.06442 -10.93583 -10.76143 -10.70038 -10.26841 -10.15938 -10.00918 -9.85840 -9.18897 -9.07439 -8.94681 -8.57415 -8.41593 -7.60992 -6.06408 -4.14469 0.86122 1.21028 3.14372 3.27488 3.28864 3.34050 3.36007 3.57595 3.77415 3.95415 4.13961 4.40625 4.51158 4.74413 4.76616 4.90979 4.93775 5.01841 5.07738 5.12581 5.17776 5.19864 5.24018 5.25410 5.29100 5.38476 5.47798 5.58679 5.67639 5.78648 5.93176 5.98929 6.07166 6.22194 6.27679 6.40545 6.74924 6.78217 6.83936 6.89976 7.01944 7.05060 7.42329 7.51512 7.71321 8.01212 8.19341 8.49494 8.82637 9.01600 9.51803 10.98932 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010882 B = 0.003011 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.346625 B = 9296.463750 C =11301.900442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.061 3.939 4 C 0.065 3.935 5 O -0.371 6.371 6 C 0.111 3.889 7 C -0.134 4.134 8 C -0.018 4.018 9 C -0.125 4.125 10 C 0.545 3.455 11 O -0.540 6.540 12 N -0.585 5.585 13 C 0.080 3.920 14 C 0.258 3.742 15 H 0.065 0.935 16 C -0.148 4.148 17 C -0.526 4.526 18 H 0.059 0.941 19 C 0.065 3.935 20 N -0.888 5.888 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C -0.067 4.067 26 C -0.160 4.160 27 C 0.111 3.889 28 F -0.140 7.140 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.151 0.849 39 H 0.051 0.949 40 H 0.076 0.924 41 H 0.058 0.942 42 H 0.031 0.969 43 H 0.095 0.905 44 H 0.012 0.988 45 H 0.264 0.736 46 H 0.148 0.852 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.529 10.049 17.861 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.015 4.015 4 C -0.012 4.012 5 O -0.290 6.290 6 C 0.035 3.965 7 C -0.135 4.135 8 C -0.036 4.036 9 C -0.128 4.128 10 C 0.331 3.669 11 O -0.419 6.419 12 N -0.316 5.316 13 C -0.063 4.063 14 C 0.158 3.842 15 H 0.082 0.918 16 C -0.206 4.206 17 C -0.565 4.565 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.526 5.526 21 Si 0.727 3.273 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.085 4.085 26 C -0.178 4.178 27 C 0.092 3.908 28 F -0.118 7.118 29 H 0.106 0.894 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.168 0.832 39 H 0.069 0.931 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.050 0.950 43 H 0.113 0.887 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.166 0.834 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.792 9.586 17.805 21.671 hybrid contribution 0.558 -0.337 -0.416 0.774 sum 8.350 9.249 17.389 21.392 Atomic orbital electron populations 1.22762 0.80862 1.03122 0.99792 1.87983 1.19772 1.26928 1.95351 1.22551 0.92162 0.85874 1.00946 1.22524 0.93667 0.97448 0.87548 1.87971 1.20899 1.82160 1.37984 1.21003 0.82431 0.99058 0.94053 1.19525 0.91632 1.04637 0.97719 1.20952 1.00276 0.92401 0.90020 1.20350 0.94176 1.02105 0.96165 1.18126 0.86641 0.79503 0.82600 1.90765 1.28117 1.45101 1.77870 1.48175 1.13942 1.63737 1.05699 1.21893 0.85625 0.98552 1.00280 1.18984 0.85163 0.93287 0.86744 0.91752 1.22109 1.02042 0.96245 1.00202 1.21271 1.01050 1.20340 1.13797 0.92297 1.24888 0.94788 0.96586 0.97479 1.69864 1.06328 1.42159 1.34246 0.86546 0.78001 0.82138 0.80641 1.20221 1.21182 1.20247 1.21652 0.91083 0.96339 0.99471 1.20982 1.00971 1.02834 0.93062 1.17545 0.83919 1.00415 0.88932 1.91473 1.61188 1.90468 1.68704 0.89406 0.94385 0.93744 0.91871 0.92163 0.92273 0.91672 0.91754 0.91636 0.83157 0.93106 0.90542 0.92393 0.95031 0.88691 0.96911 0.92614 0.83404 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.77 10.67 -40.08 -0.43 -5.19 16 3 C 0.06 0.58 6.32 37.16 0.23 0.81 16 4 C 0.06 0.60 6.32 37.16 0.23 0.83 16 5 O -0.37 -4.71 8.78 -40.08 -0.35 -5.06 16 6 C 0.11 1.24 5.90 36.01 0.21 1.45 16 7 C -0.13 -1.80 5.88 -104.61 -0.62 -2.42 16 8 C -0.02 -0.28 8.95 -39.20 -0.35 -0.64 16 9 C -0.12 -2.13 5.24 -104.96 -0.55 -2.68 16 10 C 0.54 11.84 7.35 -12.38 -0.09 11.75 16 11 O -0.54 -13.97 16.25 5.31 0.09 -13.88 16 12 N -0.59 -12.64 2.75 -176.42 -0.49 -13.13 16 13 C 0.08 1.34 8.09 59.85 0.48 1.82 16 14 C 0.26 6.62 2.63 -69.09 -0.18 6.44 16 15 H 0.06 1.92 6.91 -51.93 -0.36 1.56 16 16 C -0.15 -3.52 8.96 37.15 0.33 -3.19 16 17 C -0.53 -14.21 8.37 -34.44 -0.29 -14.50 16 18 H 0.06 1.56 7.65 -52.49 -0.40 1.15 16 19 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 20 N -0.89 -25.10 11.32 55.43 0.63 -24.47 16 21 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C -0.07 -0.93 7.56 -39.20 -0.30 -1.22 16 26 C -0.16 -1.89 10.01 -39.57 -0.40 -2.28 16 27 C 0.11 1.39 7.25 -39.27 -0.28 1.10 16 28 F -0.14 -1.64 16.79 2.25 0.04 -1.60 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.15 2.64 6.99 -52.49 -0.37 2.27 16 39 H 0.05 0.78 6.89 -51.93 -0.36 0.42 16 40 H 0.08 1.29 6.43 -51.93 -0.33 0.96 16 41 H 0.06 0.81 5.81 -51.92 -0.30 0.51 16 42 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 43 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 46 H 0.15 1.89 5.30 -52.49 -0.28 1.61 16 47 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -32.98 389.05 -7.05 -40.03 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.85 Total: 1.05 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -0.54 Total: 0.38 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.14 Total: -37.60 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.69 Total: -24.14 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.98 -7.05 -40.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173527998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.716 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds