Wall clock time and date at job start Sat Apr 11 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 113.99850 * 2 1 4 4 C 1.53002 * 109.46762 * 180.02562 * 3 2 1 5 5 O 1.42893 * 109.47220 * 65.00448 * 4 3 2 6 6 C 1.42904 * 114.00105 * 179.97438 * 5 4 3 7 7 C 1.50704 * 109.47251 * 179.97438 * 6 5 4 8 8 C 1.37860 * 119.93820 * 359.72440 * 7 6 5 9 9 C 1.39634 * 119.87486 * 179.79041 * 8 7 6 10 10 C 1.47730 * 120.11350 * 180.20597 * 9 8 7 11 11 O 1.21565 * 120.00306 * 321.04807 * 10 9 8 12 12 N 1.34776 * 119.99622 * 141.04964 * 10 9 8 13 13 C 1.46498 * 120.00279 * 4.87102 * 12 10 9 14 14 C 1.46501 * 120.00009 * 184.87774 * 12 10 9 15 15 H 1.09006 * 109.47055 * 359.97438 * 14 12 10 16 16 C 1.52994 * 109.47381 * 119.99546 * 14 12 10 17 17 C 1.50697 * 109.46987 * 239.99829 * 14 12 10 18 18 H 1.07999 * 119.99774 * 359.97438 * 17 14 12 19 19 C 1.37881 * 119.99999 * 180.02562 * 17 14 12 20 20 N 1.31512 * 119.99878 * 359.97438 * 19 17 14 21 21 Si 1.86800 * 119.99919 * 180.02562 * 19 17 14 22 22 H 1.48492 * 109.47520 * 59.99466 * 21 19 17 23 23 H 1.48500 * 109.47112 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46841 * 299.99024 * 21 19 17 25 25 C 1.39667 * 119.76736 * 0.50965 * 9 8 7 26 26 C 1.37817 * 119.87688 * 359.72249 * 25 9 8 27 27 C 1.38631 * 119.94068 * 180.02562 * 7 6 5 28 28 F 1.35098 * 119.88070 * 359.97438 * 27 7 6 29 29 H 1.09002 * 109.46940 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47119 * 299.99572 * 1 2 3 31 31 H 1.09009 * 109.47100 * 59.99722 * 1 2 3 32 32 H 1.08998 * 109.46611 * 60.00337 * 3 2 1 33 33 H 1.08997 * 109.47385 * 300.00069 * 3 2 1 34 34 H 1.09001 * 109.47472 * 305.00242 * 4 3 2 35 35 H 1.09003 * 109.46654 * 184.99960 * 4 3 2 36 36 H 1.09001 * 109.47061 * 300.00004 * 6 5 4 37 37 H 1.08998 * 109.47030 * 60.00132 * 6 5 4 38 38 H 1.07996 * 120.06239 * 0.02562 * 8 7 6 39 39 H 1.09005 * 109.46892 * 85.57129 * 13 12 10 40 40 H 1.09003 * 109.47343 * 205.57780 * 13 12 10 41 41 H 1.09007 * 109.47104 * 325.57650 * 13 12 10 42 42 H 1.08998 * 109.47342 * 59.99738 * 16 14 12 43 43 H 1.09000 * 109.47560 * 180.02562 * 16 14 12 44 44 H 1.09004 * 109.47413 * 299.99893 * 16 14 12 45 45 H 0.96997 * 119.99911 * 180.02562 * 20 19 17 46 46 H 1.07990 * 120.06228 * 179.70413 * 25 9 8 47 47 H 1.08003 * 119.94036 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 8 3.9648 0.5798 -1.2220 6 6 5.3812 0.4203 -1.3251 7 6 5.7194 -0.2241 -2.6447 8 6 4.7123 -0.5627 -3.5232 9 6 5.0275 -1.1557 -4.7475 10 6 3.9528 -1.5165 -5.6947 11 8 2.9070 -1.9777 -5.2806 12 7 4.1318 -1.3344 -7.0181 13 6 5.4285 -0.8797 -7.5261 14 6 3.0297 -1.5909 -7.9485 15 1 2.1525 -1.9192 -7.3910 16 6 2.6980 -0.3075 -8.7125 17 6 3.4356 -2.6655 -8.9239 18 1 4.4166 -3.1124 -8.8576 19 6 2.5550 -3.0775 -9.9016 20 7 1.3606 -2.5330 -9.9826 21 14 3.0579 -4.4101 -11.1102 22 1 3.3788 -5.6558 -10.3684 23 1 1.9408 -4.6701 -12.0534 24 1 4.2537 -3.9640 -11.8694 25 6 6.3618 -1.4124 -5.0705 26 6 7.3603 -1.0742 -4.1829 27 6 7.0422 -0.4811 -2.9704 28 9 8.0248 -0.1524 -2.1035 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6885 1.8463 0.8900 33 1 1.6886 1.8465 -0.8899 34 1 3.8515 0.5682 0.8409 35 1 3.9785 2.1766 0.0889 36 1 5.8622 1.3964 -1.2631 37 1 5.7358 -0.2119 -0.5110 38 1 3.6818 -0.3662 -3.2666 39 1 6.0835 -1.7389 -7.6708 40 1 5.2865 -0.3667 -8.4773 41 1 5.8803 -0.1952 -6.8081 42 1 3.5753 0.0205 -9.2700 43 1 1.8777 -0.4982 -9.4045 44 1 2.4044 0.4698 -8.0070 45 1 0.7410 -2.8230 -10.6702 46 1 6.6106 -1.8752 -6.0140 47 1 8.3925 -1.2719 -4.4319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173527998.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:42:16 Heat of formation + Delta-G solvation = -153.772515 kcal Electronic energy + Delta-G solvation = -29600.392583 eV Core-core repulsion = 25276.894759 eV Total energy + Delta-G solvation = -4323.497824 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.01924 -41.40065 -39.83192 -39.08241 -38.06657 -37.21771 -34.94907 -33.46361 -32.17979 -31.13263 -30.67917 -27.92117 -27.33774 -27.29279 -26.90213 -25.07290 -23.60773 -23.08183 -22.43243 -20.32571 -18.72999 -18.55413 -18.35547 -17.84289 -17.72791 -17.48208 -17.01736 -16.92054 -16.51490 -16.29351 -16.18748 -16.12986 -15.86461 -15.35926 -15.01282 -14.88725 -14.49700 -14.48219 -14.01863 -13.89703 -13.74658 -13.48501 -13.35155 -13.15520 -13.02579 -12.91122 -12.74137 -12.70104 -12.59436 -12.30260 -12.19699 -12.13282 -12.04054 -11.92773 -11.19378 -10.85571 -10.78254 -10.65240 -10.51088 -10.02346 -9.69090 -9.37021 -8.13898 -6.30848 -0.29274 0.13913 1.42595 1.45627 1.52663 1.72629 2.22520 2.44257 2.49666 2.58458 2.85713 3.09781 3.14125 3.55194 3.57505 3.77469 4.02148 4.10463 4.18148 4.23063 4.36295 4.37020 4.38784 4.42957 4.46772 4.54787 4.56677 4.61375 4.67230 4.76224 4.80739 4.83738 4.86642 4.89291 4.94574 5.02276 5.05512 5.10623 5.26394 5.45229 5.59484 5.65659 5.73056 6.01724 6.12711 6.14904 6.27446 6.73681 6.76241 7.25556 7.43429 8.90605 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010882 B = 0.003011 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.346625 B = 9296.463750 C =11301.900442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.417 6.417 3 C 0.054 3.946 4 C 0.059 3.941 5 O -0.404 6.404 6 C 0.108 3.892 7 C -0.133 4.133 8 C -0.031 4.031 9 C -0.144 4.144 10 C 0.537 3.463 11 O -0.600 6.600 12 N -0.590 5.590 13 C 0.076 3.924 14 C 0.261 3.739 15 H 0.007 0.993 16 C -0.133 4.133 17 C -0.539 4.539 18 H 0.064 0.936 19 C 0.015 3.985 20 N -0.918 5.918 21 Si 0.967 3.033 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.260 1.260 25 C -0.061 4.061 26 C -0.140 4.140 27 C 0.123 3.877 28 F -0.129 7.129 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.122 0.878 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.070 0.930 44 H 0.018 0.982 45 H 0.265 0.735 46 H 0.162 0.838 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.317 10.761 18.463 24.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C -0.022 4.022 4 C -0.017 4.017 5 O -0.324 6.324 6 C 0.032 3.968 7 C -0.134 4.134 8 C -0.050 4.050 9 C -0.148 4.148 10 C 0.326 3.674 11 O -0.483 6.483 12 N -0.319 5.319 13 C -0.066 4.066 14 C 0.159 3.841 15 H 0.025 0.975 16 C -0.191 4.191 17 C -0.578 4.578 18 H 0.082 0.918 19 C -0.185 4.185 20 N -0.557 5.557 21 Si 0.791 3.209 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.184 1.184 25 C -0.079 4.079 26 C -0.159 4.159 27 C 0.104 3.896 28 F -0.107 7.107 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.140 0.860 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.037 0.963 45 H 0.074 0.926 46 H 0.180 0.820 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 11.631 10.330 18.406 24.099 hybrid contribution -0.604 -0.507 -0.480 0.923 sum 11.027 9.823 17.927 23.226 Atomic orbital electron populations 1.22872 0.79873 1.03412 1.00792 1.87929 1.21169 1.29003 1.95590 1.22795 0.92504 0.84907 1.01976 1.22782 0.93508 0.98948 0.86468 1.87957 1.21809 1.82872 1.39772 1.21164 0.82182 1.00348 0.93060 1.19718 0.91616 1.03993 0.98074 1.20705 0.99834 0.93897 0.90596 1.19970 0.94163 1.04941 0.95692 1.18897 0.87070 0.78290 0.83121 1.90717 1.30971 1.47809 1.78844 1.48160 1.14803 1.63544 1.05405 1.22194 0.83496 0.99987 1.00935 1.18597 0.84911 0.93938 0.86609 0.97509 1.21895 1.01944 0.95610 0.99700 1.21544 1.01334 1.20873 1.14028 0.91779 1.25761 0.94686 0.98739 0.99323 1.70019 1.07351 1.43447 1.34892 0.85482 0.78147 0.78951 0.78273 1.20339 1.21014 1.18396 1.21718 0.89634 0.96056 1.00534 1.21315 1.02201 1.00606 0.91730 1.17563 0.83536 0.99388 0.89158 1.91511 1.60548 1.90210 1.68423 0.89613 0.91786 0.94266 0.88688 0.93131 0.91611 0.88636 0.89295 0.90346 0.86031 0.91123 0.90642 0.89199 0.92953 0.91152 0.96290 0.92616 0.82049 0.80219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.77 16 2 O -0.42 -10.76 10.67 -144.34 -1.54 -12.30 16 3 C 0.05 1.01 6.32 71.98 0.45 1.46 16 4 C 0.06 1.01 6.32 71.98 0.45 1.47 16 5 O -0.40 -10.23 8.78 -144.34 -1.27 -11.50 16 6 C 0.11 2.23 5.90 71.24 0.42 2.65 16 7 C -0.13 -3.37 5.88 -19.86 -0.12 -3.49 16 8 C -0.03 -1.03 8.95 22.52 0.20 -0.82 16 9 C -0.14 -4.95 5.24 -20.09 -0.11 -5.06 16 10 C 0.54 24.46 7.35 86.75 0.64 25.10 16 11 O -0.60 -33.70 16.25 -3.92 -0.06 -33.77 16 12 N -0.59 -26.06 2.75 -830.34 -2.29 -28.35 16 13 C 0.08 2.39 8.09 127.77 1.03 3.42 16 14 C 0.26 13.99 2.63 44.24 0.12 14.11 16 15 H 0.01 0.45 6.91 -2.38 -0.02 0.43 16 16 C -0.13 -6.54 8.96 71.98 0.64 -5.89 16 17 C -0.54 -29.63 8.37 25.60 0.21 -29.42 16 18 H 0.06 3.37 7.65 -2.91 -0.02 3.34 16 19 C 0.01 0.80 5.30 84.66 0.45 1.25 16 20 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 21 Si 0.97 43.20 29.54 68.60 2.03 45.22 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 25 C -0.06 -1.53 7.56 22.52 0.17 -1.36 16 26 C -0.14 -2.70 10.01 22.28 0.22 -2.48 16 27 C 0.12 2.63 7.25 22.47 0.16 2.79 16 28 F -0.13 -2.44 16.79 44.97 0.75 -1.69 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.12 4.66 6.99 -2.91 -0.02 4.64 16 39 H 0.07 1.97 6.89 -2.38 -0.02 1.95 16 40 H 0.07 2.40 6.43 -2.39 -0.02 2.39 16 41 H 0.09 2.27 5.81 -2.38 -0.01 2.26 16 42 H 0.05 2.29 6.66 -2.39 -0.02 2.28 16 43 H 0.07 3.82 6.07 -2.39 -0.01 3.80 16 44 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 45 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 46 H 0.16 3.57 5.30 -2.92 -0.02 3.56 16 47 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -77.32 389.05 5.06 -72.26 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.98 Total: 17.90 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 6.21 Total: 5.52 kcal Atomic # 7 Polarization: -79.62 SS G_CDS: -2.04 Total: -81.66 kcal Atomic # 8 Polarization: -54.69 SS G_CDS: -2.87 Total: -57.56 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.75 Total: -1.69 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -77.32 5.06 -72.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173527998.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.510 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds