Wall clock time and date at job start Sat Apr 11 2020 05:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 113.99984 * 2 1 4 4 C 1.53004 * 109.47454 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46986 * 64.99600 * 4 3 2 6 6 C 1.46496 * 120.00628 * 270.00225 * 5 4 3 7 7 C 1.50699 * 109.47598 * 270.00465 * 6 5 4 8 8 H 1.08005 * 119.99628 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00538 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00182 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99668 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47170 * 89.99666 * 11 9 7 13 13 H 1.48495 * 109.46883 * 209.99839 * 11 9 7 14 14 H 1.48496 * 109.47123 * 329.99923 * 11 9 7 15 15 C 1.34774 * 119.99828 * 90.00387 * 5 4 3 16 16 O 1.21279 * 120.00472 * 179.97438 * 15 5 4 17 17 C 1.50706 * 120.00020 * 0.02562 * 15 5 4 18 18 C 1.52997 * 109.47238 * 180.02562 * 17 15 5 19 19 C 1.52996 * 109.46947 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.46946 * 179.97438 * 19 18 17 21 21 C 1.38265 * 119.93595 * 269.72375 * 20 19 18 22 22 C 1.38182 * 120.09107 * 179.76710 * 21 20 19 23 23 C 1.38661 * 119.97258 * 0.51155 * 22 21 20 24 24 O 1.35953 * 120.06221 * 179.72291 * 23 22 21 25 25 C 1.38906 * 119.87066 * 359.74315 * 23 22 21 26 26 F 1.35108 * 120.04454 * 179.97438 * 25 23 22 27 27 C 1.38252 * 119.93568 * 90.00157 * 20 19 18 28 28 H 1.09005 * 109.47304 * 300.00130 * 1 2 3 29 29 H 1.09002 * 109.47200 * 59.99688 * 1 2 3 30 30 H 1.08996 * 109.47283 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47458 * 60.00083 * 3 2 1 32 32 H 1.09002 * 109.47344 * 300.00334 * 3 2 1 33 33 H 1.09004 * 109.46898 * 305.00005 * 4 3 2 34 34 H 1.08993 * 109.47182 * 185.00344 * 4 3 2 35 35 H 1.09008 * 109.47096 * 29.99824 * 6 5 4 36 36 H 1.09003 * 109.47776 * 149.99700 * 6 5 4 37 37 H 0.97002 * 119.99991 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.46953 * 299.99667 * 17 15 5 39 39 H 1.09000 * 109.47318 * 59.99264 * 17 15 5 40 40 H 1.09001 * 109.46832 * 299.99686 * 18 17 15 41 41 H 1.09004 * 109.47261 * 59.99705 * 18 17 15 42 42 H 1.08992 * 109.47554 * 299.99696 * 19 18 17 43 43 H 1.08996 * 109.47261 * 60.00229 * 19 18 17 44 44 H 1.08001 * 119.95322 * 0.02562 * 21 20 19 45 45 H 1.08007 * 120.01099 * 180.25663 * 22 21 20 46 46 H 0.96695 * 114.00622 * 270.01828 * 24 23 22 47 47 H 1.07994 * 119.98798 * 359.95635 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1052 -0.8919 -1.3428 7 6 5.5009 -1.2977 -0.9449 8 1 6.2197 -0.5458 -0.6544 9 6 5.8603 -2.6288 -0.9517 10 7 7.0785 -2.9828 -0.6050 11 14 4.6172 -3.9293 -1.4549 12 1 4.7026 -4.1550 -2.9201 13 1 4.9112 -5.1976 -0.7407 14 1 3.2498 -3.4689 -1.1039 15 6 4.2614 1.3338 -2.3217 16 8 4.6263 0.8204 -3.3582 17 6 4.1287 2.8321 -2.2290 18 6 4.5097 3.4619 -3.5703 19 6 4.3744 4.9830 -3.4762 20 6 4.7503 5.6033 -4.7972 21 6 6.0610 5.9717 -5.0384 22 6 6.4101 6.5363 -6.2503 23 6 5.4431 6.7438 -7.2221 24 8 5.7835 7.3044 -8.4129 25 6 4.1257 6.3781 -6.9764 26 9 3.1805 6.5791 -7.9206 27 6 3.7829 5.8083 -5.7633 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8465 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9784 2.1766 0.0890 35 1 3.3853 -1.3629 -0.6733 36 1 3.9119 -1.2114 -2.3669 37 1 7.3314 -3.9193 -0.6102 38 1 3.0982 3.0912 -1.9861 39 1 4.7912 3.2080 -1.4493 40 1 5.5402 3.2028 -3.8136 41 1 3.8468 3.0859 -4.3496 42 1 3.3439 5.2417 -3.2331 43 1 5.0371 5.3592 -2.6969 44 1 6.8137 5.8140 -4.2801 45 1 7.4351 6.8198 -6.4389 46 1 5.7211 8.2692 -8.4257 47 1 2.7591 5.5232 -5.5711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615755708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:07 Heat of formation + Delta-G solvation = -152.245009 kcal Electronic energy + Delta-G solvation = -28935.749736 eV Core-core repulsion = 24612.318150 eV Total energy + Delta-G solvation = -4323.431586 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -49.11501 -39.97046 -39.29863 -37.70114 -37.45783 -35.03690 -34.39297 -32.56578 -31.08263 -30.63286 -29.77565 -27.97759 -26.45302 -26.02696 -23.43417 -23.16666 -22.70628 -21.80319 -20.96291 -18.93092 -18.38471 -17.27026 -17.03404 -16.89343 -16.70217 -16.27955 -16.12507 -15.61105 -15.52321 -15.34853 -15.09094 -14.78270 -14.41646 -14.22011 -13.97085 -13.92840 -13.43446 -13.22913 -12.92236 -12.66440 -12.58672 -12.23960 -12.11437 -12.08574 -11.80167 -11.65536 -11.49829 -11.42593 -11.20857 -10.98206 -10.88816 -10.81258 -10.63120 -10.36286 -10.04912 -9.56472 -9.46258 -9.22635 -8.96690 -8.75561 -8.50223 -7.65508 -6.01315 -3.98682 0.73872 0.85202 3.12630 3.36562 3.36856 3.42581 3.46969 3.64258 3.82394 3.94679 4.01640 4.37170 4.48272 4.48766 4.84582 4.89094 4.92137 5.01750 5.15450 5.16981 5.24646 5.32595 5.35603 5.38430 5.40096 5.44821 5.49213 5.56387 5.62309 5.64620 5.67225 5.71179 5.74767 5.81616 5.89354 6.06739 6.17631 6.30714 6.38050 6.44049 6.95750 7.09570 7.22454 7.28927 7.42145 7.72281 8.33123 8.54910 8.99052 9.04698 9.60356 11.12219 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.002403 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.215562 B =11648.131758 C =12820.552372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.375 6.375 3 C 0.043 3.957 4 C 0.112 3.888 5 N -0.587 5.587 6 C 0.219 3.781 7 C -0.525 4.525 8 H 0.072 0.928 9 C 0.071 3.929 10 N -0.901 5.901 11 Si 0.874 3.126 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.262 1.262 15 C 0.503 3.497 16 O -0.540 6.540 17 C -0.141 4.141 18 C -0.099 4.099 19 C -0.082 4.082 20 C -0.053 4.053 21 C -0.109 4.109 22 C -0.113 4.113 23 C 0.063 3.937 24 O -0.489 6.489 25 C 0.075 3.925 26 F -0.135 7.135 27 C -0.138 4.138 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.042 0.958 36 H 0.031 0.969 37 H 0.263 0.737 38 H 0.084 0.916 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.389 0.611 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 23.324 -3.311 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.293 6.293 3 C -0.035 4.035 4 C -0.013 4.013 5 N -0.317 5.317 6 C 0.098 3.902 7 C -0.564 4.564 8 H 0.090 0.910 9 C -0.130 4.130 10 N -0.540 5.540 11 Si 0.701 3.299 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.186 1.186 15 C 0.290 3.710 16 O -0.417 6.417 17 C -0.181 4.181 18 C -0.137 4.137 19 C -0.120 4.120 20 C -0.053 4.053 21 C -0.128 4.128 22 C -0.132 4.132 23 C 0.018 3.982 24 O -0.298 6.298 25 C 0.055 3.945 26 F -0.113 7.113 27 C -0.157 4.157 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.060 0.940 36 H 0.049 0.951 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.245 0.755 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.249 22.117 -4.047 24.313 hybrid contribution -0.999 -0.010 -0.252 1.030 sum -10.248 22.108 -4.299 24.744 Atomic orbital electron populations 1.22706 0.81951 1.02568 0.99295 1.88067 1.18828 1.27270 1.95181 1.23152 0.95378 0.85296 0.99667 1.21532 0.90994 0.99338 0.89400 1.47855 1.64744 1.08910 1.10234 1.19666 0.97593 0.75142 0.97782 1.21367 0.96176 0.93481 1.45363 0.90961 1.24829 0.95154 0.98372 0.94674 1.69900 1.18183 1.17196 1.48748 0.86869 0.82531 0.81322 0.79204 1.20089 1.21236 1.18647 1.20403 0.78032 0.88674 0.83905 1.90676 1.46403 1.75126 1.29508 1.21745 1.02937 0.93815 0.99587 1.21320 1.03785 0.91819 0.96778 1.20713 1.02470 0.95738 0.93044 1.19821 0.92829 0.96513 0.96140 1.21088 0.96081 0.98508 0.97088 1.21340 0.99577 1.00003 0.92262 1.18436 0.90410 1.02201 0.87203 1.84900 1.89558 1.25508 1.29875 1.18111 0.85427 1.03383 0.87540 1.91498 1.63454 1.93017 1.63381 1.21014 1.01357 1.01311 0.91976 0.94489 0.94518 0.89877 0.92859 0.93621 0.88835 0.89656 0.94028 0.95075 0.92705 0.89809 0.89228 0.90623 0.91046 0.90598 0.90228 0.84557 0.84337 0.75506 0.84264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.48 16 2 O -0.38 -5.92 9.53 -35.23 -0.34 -6.26 16 3 C 0.04 0.55 6.28 37.16 0.23 0.78 16 4 C 0.11 1.68 5.62 -4.04 -0.02 1.66 16 5 N -0.59 -11.90 2.42 -175.06 -0.42 -12.32 16 6 C 0.22 5.50 4.05 -5.20 -0.02 5.48 16 7 C -0.53 -15.34 9.94 -34.44 -0.34 -15.69 16 8 H 0.07 2.29 8.06 -52.48 -0.42 1.86 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 11 Si 0.87 22.31 27.47 -169.99 -4.67 17.64 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 15 C 0.50 9.87 7.67 -10.98 -0.08 9.79 16 16 O -0.54 -13.20 15.56 5.56 0.09 -13.11 16 17 C -0.14 -1.79 4.25 -27.88 -0.12 -1.91 16 18 C -0.10 -1.21 4.49 -26.73 -0.12 -1.33 16 19 C -0.08 -0.69 5.34 -27.88 -0.15 -0.84 16 20 C -0.05 -0.50 5.13 -104.61 -0.54 -1.03 16 21 C -0.11 -0.97 9.69 -39.59 -0.38 -1.35 16 22 C -0.11 -1.01 9.98 -39.45 -0.39 -1.40 16 23 C 0.06 0.64 6.71 -39.18 -0.26 0.38 16 24 O -0.49 -4.56 13.37 -19.59 -0.26 -4.82 16 25 C 0.08 0.83 7.31 -39.30 -0.29 0.54 16 26 F -0.13 -1.62 17.11 2.25 0.04 -1.58 16 27 C -0.14 -1.37 9.67 -39.54 -0.38 -1.75 16 28 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.53 7.30 -51.93 -0.38 0.16 16 33 H 0.09 1.54 8.07 -51.93 -0.42 1.12 16 34 H 0.09 0.97 6.44 -51.93 -0.33 0.63 16 35 H 0.04 1.04 6.17 -51.92 -0.32 0.72 16 36 H 0.03 0.85 6.85 -51.93 -0.36 0.49 16 37 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 38 H 0.08 0.84 7.26 -51.93 -0.38 0.46 16 39 H 0.09 0.97 7.40 -51.93 -0.38 0.58 16 40 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 41 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 42 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 43 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 44 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 45 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.39 1.62 9.06 45.56 0.41 2.03 16 47 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -38.32 396.82 -7.06 -45.38 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.39 Total: -0.23 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -1.86 Total: -3.16 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.35 Total: -39.84 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.51 Total: -24.19 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.67 Total: 17.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -38.32 -7.06 -45.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615755708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.867 kcal (2) G-P(sol) polarization free energy of solvation -38.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds