Wall clock time and date at job start Sat Apr 11 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42903 * 113.99984 * 2 1 4 4 C 1.53004 * 109.47454 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.46986 * 64.99600 * 4 3 2 6 6 C 1.46496 * 120.00628 * 270.00225 * 5 4 3 7 7 C 1.50699 * 109.47598 * 270.00465 * 6 5 4 8 8 H 1.08005 * 119.99628 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00538 * 179.97438 * 7 6 5 10 10 N 1.31507 * 120.00182 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 119.99668 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47170 * 89.99666 * 11 9 7 13 13 H 1.48495 * 109.46883 * 209.99839 * 11 9 7 14 14 H 1.48496 * 109.47123 * 329.99923 * 11 9 7 15 15 C 1.34774 * 119.99828 * 90.00387 * 5 4 3 16 16 O 1.21279 * 120.00472 * 179.97438 * 15 5 4 17 17 C 1.50706 * 120.00020 * 0.02562 * 15 5 4 18 18 C 1.52997 * 109.47238 * 180.02562 * 17 15 5 19 19 C 1.52996 * 109.46947 * 179.97438 * 18 17 15 20 20 C 1.50703 * 109.46946 * 179.97438 * 19 18 17 21 21 C 1.38265 * 119.93595 * 269.72375 * 20 19 18 22 22 C 1.38182 * 120.09107 * 179.76710 * 21 20 19 23 23 C 1.38661 * 119.97258 * 0.51155 * 22 21 20 24 24 O 1.35953 * 120.06221 * 179.72291 * 23 22 21 25 25 C 1.38906 * 119.87066 * 359.74315 * 23 22 21 26 26 F 1.35108 * 120.04454 * 179.97438 * 25 23 22 27 27 C 1.38252 * 119.93568 * 90.00157 * 20 19 18 28 28 H 1.09005 * 109.47304 * 300.00130 * 1 2 3 29 29 H 1.09002 * 109.47200 * 59.99688 * 1 2 3 30 30 H 1.08996 * 109.47283 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47458 * 60.00083 * 3 2 1 32 32 H 1.09002 * 109.47344 * 300.00334 * 3 2 1 33 33 H 1.09004 * 109.46898 * 305.00005 * 4 3 2 34 34 H 1.08993 * 109.47182 * 185.00344 * 4 3 2 35 35 H 1.09008 * 109.47096 * 29.99824 * 6 5 4 36 36 H 1.09003 * 109.47776 * 149.99700 * 6 5 4 37 37 H 0.97002 * 119.99991 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.46953 * 299.99667 * 17 15 5 39 39 H 1.09000 * 109.47318 * 59.99264 * 17 15 5 40 40 H 1.09001 * 109.46832 * 299.99686 * 18 17 15 41 41 H 1.09004 * 109.47261 * 59.99705 * 18 17 15 42 42 H 1.08992 * 109.47554 * 299.99696 * 19 18 17 43 43 H 1.08996 * 109.47261 * 60.00229 * 19 18 17 44 44 H 1.08001 * 119.95322 * 0.02562 * 21 20 19 45 45 H 1.08007 * 120.01099 * 180.25663 * 22 21 20 46 46 H 0.96695 * 114.00622 * 270.01828 * 24 23 22 47 47 H 1.07994 * 119.98798 * 359.95635 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.1052 -0.8919 -1.3428 7 6 5.5009 -1.2977 -0.9449 8 1 6.2197 -0.5458 -0.6544 9 6 5.8603 -2.6288 -0.9517 10 7 7.0785 -2.9828 -0.6050 11 14 4.6172 -3.9293 -1.4549 12 1 4.7026 -4.1550 -2.9201 13 1 4.9112 -5.1976 -0.7407 14 1 3.2498 -3.4689 -1.1039 15 6 4.2614 1.3338 -2.3217 16 8 4.6263 0.8204 -3.3582 17 6 4.1287 2.8321 -2.2290 18 6 4.5097 3.4619 -3.5703 19 6 4.3744 4.9830 -3.4762 20 6 4.7503 5.6033 -4.7972 21 6 6.0610 5.9717 -5.0384 22 6 6.4101 6.5363 -6.2503 23 6 5.4431 6.7438 -7.2221 24 8 5.7835 7.3044 -8.4129 25 6 4.1257 6.3781 -6.9764 26 9 3.1805 6.5791 -7.9206 27 6 3.7829 5.8083 -5.7633 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8465 0.8900 32 1 1.6885 1.8465 -0.8900 33 1 3.8514 0.5683 0.8410 34 1 3.9784 2.1766 0.0890 35 1 3.3853 -1.3629 -0.6733 36 1 3.9119 -1.2114 -2.3669 37 1 7.3314 -3.9193 -0.6102 38 1 3.0982 3.0912 -1.9861 39 1 4.7912 3.2080 -1.4493 40 1 5.5402 3.2028 -3.8136 41 1 3.8468 3.0859 -4.3496 42 1 3.3439 5.2417 -3.2331 43 1 5.0371 5.3592 -2.6969 44 1 6.8137 5.8140 -4.2801 45 1 7.4351 6.8198 -6.4389 46 1 5.7211 8.2692 -8.4257 47 1 2.7591 5.5232 -5.5711 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615755708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:05 Heat of formation + Delta-G solvation = -180.149093 kcal Electronic energy + Delta-G solvation = -28936.959748 eV Core-core repulsion = 24612.318150 eV Total energy + Delta-G solvation = -4324.641598 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.168 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -49.95130 -40.89337 -40.54506 -38.74278 -38.23040 -36.56488 -35.40067 -34.69762 -31.98940 -31.60987 -31.03038 -29.48579 -27.51416 -27.05367 -24.71610 -23.99592 -23.93799 -23.06341 -21.87610 -19.83084 -19.62919 -19.10204 -18.21199 -17.87244 -17.71243 -17.34052 -17.04133 -16.92859 -16.79565 -16.26696 -16.20494 -15.98556 -15.66921 -15.20615 -15.01890 -14.93148 -14.63400 -14.43228 -14.33835 -13.88803 -13.71710 -13.49054 -13.34412 -13.11938 -13.00020 -12.85324 -12.67290 -12.56369 -12.44119 -12.24511 -12.10645 -11.97994 -11.88693 -11.71964 -11.59894 -11.52682 -10.81573 -10.59775 -10.48027 -9.93720 -9.49471 -9.33445 -8.33255 -6.35890 0.02358 0.14478 1.31248 1.34011 1.44812 1.89525 2.31379 2.34837 2.48463 2.97860 2.99197 3.03951 3.31300 3.65468 3.72987 3.81720 4.11910 4.18625 4.22244 4.25789 4.29730 4.33037 4.46694 4.53429 4.57508 4.59498 4.66536 4.69302 4.75452 4.81733 4.88989 4.95906 5.00048 5.00726 5.03839 5.05315 5.07543 5.17400 5.23413 5.46503 5.50405 5.57877 5.69981 5.78488 6.26828 6.37429 6.64772 6.69529 6.82939 7.25154 7.51917 8.83631 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.012380 B = 0.002403 C = 0.002183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.215562 B =11648.131758 C =12820.552372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.420 6.420 3 C 0.045 3.955 4 C 0.103 3.897 5 N -0.596 5.596 6 C 0.234 3.766 7 C -0.530 4.530 8 H 0.033 0.967 9 C 0.012 3.988 10 N -0.945 5.945 11 Si 0.942 3.058 12 H -0.278 1.278 13 H -0.273 1.273 14 H -0.244 1.244 15 C 0.489 3.511 16 O -0.602 6.602 17 C -0.125 4.125 18 C -0.095 4.095 19 C -0.070 4.070 20 C -0.063 4.063 21 C -0.110 4.110 22 C -0.118 4.118 23 C 0.057 3.943 24 O -0.503 6.503 25 C 0.047 3.953 26 F -0.147 7.147 27 C -0.142 4.142 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.046 0.954 36 H 0.005 0.995 37 H 0.267 0.733 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.155 0.845 45 H 0.157 0.843 46 H 0.410 0.590 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 25.360 -1.939 27.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.340 6.340 3 C -0.032 4.032 4 C -0.019 4.019 5 N -0.326 5.326 6 C 0.111 3.889 7 C -0.568 4.568 8 H 0.051 0.949 9 C -0.186 4.186 10 N -0.586 5.586 11 Si 0.765 3.235 12 H -0.204 1.204 13 H -0.198 1.198 14 H -0.167 1.167 15 C 0.279 3.721 16 O -0.484 6.484 17 C -0.165 4.165 18 C -0.133 4.133 19 C -0.107 4.107 20 C -0.063 4.063 21 C -0.128 4.128 22 C -0.136 4.136 23 C 0.011 3.989 24 O -0.316 6.316 25 C 0.027 3.973 26 F -0.126 7.126 27 C -0.160 4.160 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.147 0.853 35 H 0.064 0.936 36 H 0.023 0.977 37 H 0.076 0.924 38 H 0.142 0.858 39 H 0.138 0.862 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.118 0.882 43 H 0.122 0.878 44 H 0.173 0.827 45 H 0.175 0.825 46 H 0.269 0.731 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -11.196 24.218 -2.633 26.810 hybrid contribution -0.316 -0.574 -0.679 0.943 sum -11.511 23.644 -3.311 26.505 Atomic orbital electron populations 1.22851 0.80023 1.03052 1.00898 1.87996 1.21128 1.29313 1.95575 1.23215 0.93041 0.84731 1.02207 1.21928 0.93420 1.00544 0.86020 1.47959 1.64896 1.07093 1.12630 1.19162 0.94883 0.79037 0.95837 1.21619 0.97514 0.92871 1.44839 0.94915 1.25763 0.97208 1.00943 0.94665 1.70035 1.20317 1.18018 1.50222 0.85797 0.80660 0.78565 0.78483 1.20405 1.19786 1.16738 1.21725 0.76209 0.91568 0.82569 1.90642 1.49041 1.76853 1.31869 1.21787 1.06133 0.87808 1.00739 1.21242 1.01498 0.94663 0.95925 1.20655 1.04651 0.92307 0.93080 1.20008 0.92947 0.96755 0.96578 1.21409 0.96418 0.97516 0.97440 1.21580 1.00203 0.99793 0.92049 1.18630 0.90436 1.02218 0.87575 1.84833 1.89490 1.27497 1.29822 1.18420 0.85775 1.05033 0.88057 1.91456 1.63929 1.93316 1.63921 1.21210 1.02197 1.00902 0.91715 0.92057 0.93608 0.90158 0.88916 0.92135 0.91000 0.85316 0.93564 0.97701 0.92367 0.85760 0.86222 0.93443 0.93243 0.88176 0.87846 0.82697 0.82521 0.73108 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.42 -12.32 9.53 -148.98 -1.42 -13.74 16 3 C 0.05 0.98 6.28 71.98 0.45 1.43 16 4 C 0.10 2.85 5.62 86.38 0.49 3.34 16 5 N -0.60 -23.89 2.42 -826.16 -2.00 -25.88 16 6 C 0.23 11.96 4.05 85.63 0.35 12.31 16 7 C -0.53 -32.06 9.94 25.60 0.25 -31.81 16 8 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 9 C 0.01 0.73 5.47 84.66 0.46 1.19 16 10 N -0.95 -61.08 13.96 21.45 0.30 -60.79 16 11 Si 0.94 46.89 27.47 68.60 1.88 48.78 16 12 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 13 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 14 H -0.24 -11.33 6.54 99.48 0.65 -10.68 16 15 C 0.49 18.99 7.67 87.66 0.67 19.66 16 16 O -0.60 -30.49 15.56 -3.02 -0.05 -30.53 16 17 C -0.13 -2.78 4.25 29.85 0.13 -2.65 16 18 C -0.10 -2.15 4.49 30.59 0.14 -2.01 16 19 C -0.07 -0.93 5.34 29.85 0.16 -0.77 16 20 C -0.06 -1.05 5.13 -19.85 -0.10 -1.15 16 21 C -0.11 -1.73 9.69 22.26 0.22 -1.51 16 22 C -0.12 -1.93 9.98 22.36 0.22 -1.71 16 23 C 0.06 1.13 6.71 22.53 0.15 1.28 16 24 O -0.50 -9.14 13.37 -93.02 -1.24 -10.38 16 25 C 0.05 1.02 7.31 22.45 0.16 1.19 16 26 F -0.15 -3.60 17.11 44.97 0.77 -2.83 16 27 C -0.14 -2.66 9.67 22.30 0.22 -2.45 16 28 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.13 7.30 -2.39 -0.02 1.11 16 33 H 0.07 2.30 8.07 -2.38 -0.02 2.28 16 34 H 0.13 2.35 6.44 -2.39 -0.02 2.34 16 35 H 0.05 2.32 6.17 -2.38 -0.01 2.30 16 36 H 0.00 0.28 6.85 -2.39 -0.02 0.26 16 37 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 38 H 0.12 1.82 7.26 -2.39 -0.02 1.80 16 39 H 0.12 2.01 7.40 -2.39 -0.02 1.99 16 40 H 0.05 1.33 8.10 -2.39 -0.02 1.31 16 41 H 0.05 1.32 8.10 -2.38 -0.02 1.30 16 42 H 0.10 0.90 8.08 -2.39 -0.02 0.88 16 43 H 0.10 0.93 8.08 -2.39 -0.02 0.91 16 44 H 0.16 1.79 8.06 -2.91 -0.02 1.77 16 45 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 46 H 0.41 3.11 9.06 -74.06 -0.67 2.44 16 47 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -90.10 396.82 3.71 -86.39 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: 0.26 Total: 10.85 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.21 Total: -1.86 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -1.70 Total: -86.67 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -2.71 Total: -54.66 kcal Atomic # 9 Polarization: -3.60 SS G_CDS: 0.77 Total: -2.83 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 1.88 Total: 48.78 kcal Total: -90.10 3.71 -86.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615755708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.761 kcal (2) G-P(sol) polarization free energy of solvation -90.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds