Wall clock time and date at job start Sat Apr 11 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.71615 * 2 1 4 4 C 1.52989 * 109.75337 * 120.63489 * 2 1 3 5 5 N 1.45647 * 110.77091 * 166.42035 * 4 2 1 6 6 C 1.46497 * 117.70329 * 158.10098 * 5 4 2 7 7 C 1.33374 * 124.58976 * 338.07189 * 5 4 2 8 8 O 1.21289 * 118.48932 * 184.34349 * 7 5 4 9 9 C 1.50074 * 123.00989 * 4.17445 * 7 5 4 10 10 N 1.47047 * 109.08486 * 347.58207 * 9 7 5 11 11 C 1.34783 * 121.35426 * 222.69057 * 10 9 7 12 12 O 1.21349 * 119.99603 * 184.22615 * 11 10 9 13 13 C 1.49447 * 119.99925 * 4.23123 * 11 10 9 14 14 O 1.21351 * 120.00274 * 6.13516 * 13 11 10 15 15 N 1.34776 * 119.99983 * 186.13356 * 13 11 10 16 16 C 1.47023 * 125.64736 * 0.04282 * 15 13 11 17 17 C 1.54318 * 107.27243 * 181.02357 * 16 15 13 18 18 C 1.55157 * 102.94153 * 22.19387 * 17 16 15 19 19 O 1.42893 * 111.00733 * 82.57355 * 18 17 16 20 20 C 1.50707 * 111.00508 * 206.42596 * 18 17 16 21 21 H 1.07994 * 120.00187 * 116.75548 * 20 18 17 22 22 C 1.37876 * 119.99660 * 296.75242 * 20 18 17 23 23 N 1.31518 * 119.99924 * 175.87628 * 22 20 18 24 24 Si 1.86798 * 120.00201 * 355.88292 * 22 20 18 25 25 H 1.48505 * 109.46930 * 94.66637 * 24 22 20 26 26 H 1.48501 * 109.47244 * 214.66485 * 24 22 20 27 27 H 1.48493 * 109.47148 * 334.66713 * 24 22 20 28 28 C 1.47416 * 125.64955 * 180.02562 * 15 13 11 29 29 H 1.08994 * 109.47358 * 180.60921 * 1 2 3 30 30 H 1.09008 * 109.46844 * 300.61521 * 1 2 3 31 31 H 1.09000 * 109.46611 * 60.60710 * 1 2 3 32 32 H 1.09004 * 109.21675 * 286.75386 * 4 2 1 33 33 H 1.08998 * 109.21725 * 46.08339 * 4 2 1 34 34 H 1.08996 * 109.47662 * 89.99881 * 6 5 4 35 35 H 1.09005 * 109.47227 * 209.99514 * 6 5 4 36 36 H 1.09002 * 109.47143 * 329.99678 * 6 5 4 37 37 H 1.09004 * 109.52690 * 227.66866 * 9 7 5 38 38 H 1.08993 * 109.41605 * 107.43409 * 9 7 5 39 39 H 1.08997 * 109.88152 * 61.60510 * 16 15 13 40 40 H 1.09004 * 109.88332 * 300.43737 * 16 15 13 41 41 H 1.08998 * 110.72383 * 263.83138 * 17 16 15 42 42 H 1.08998 * 110.72325 * 140.55219 * 17 16 15 43 43 H 0.96703 * 114.00141 * 180.02562 * 19 18 17 44 44 H 0.96999 * 120.00236 * 180.02562 * 23 22 20 45 45 H 1.09003 * 110.37039 * 37.06603 * 28 15 13 46 46 H 1.09003 * 110.36754 * 274.74732 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0261 0.0000 4 6 2.0471 -0.7337 1.2389 5 7 3.4675 -1.0286 1.1093 6 6 4.2285 -1.2671 2.3382 7 6 4.1239 -1.0971 -0.0497 8 8 5.2903 -1.4294 -0.0352 9 6 3.4844 -0.7856 -1.3712 10 7 2.0269 -0.7059 -1.1931 11 6 1.1803 -1.2613 -2.0827 12 8 -0.0174 -1.1154 -1.9531 13 6 1.7166 -2.0568 -3.2286 14 8 2.9041 -2.2969 -3.2975 15 7 0.8814 -2.5075 -4.1855 16 6 -0.5721 -2.2897 -4.2263 17 6 -1.1078 -3.0069 -5.4832 18 6 -0.0099 -4.0639 -5.7746 19 8 -0.1927 -5.2284 -4.9668 20 6 0.0191 -4.4234 -7.2379 21 1 0.8971 -4.2095 -7.8292 22 6 -1.0754 -5.0253 -7.8217 23 7 -1.0820 -5.2653 -9.1148 24 14 -2.5488 -5.4998 -6.7761 25 1 -3.5588 -4.4121 -6.8215 26 1 -3.1467 -6.7529 -7.3030 27 1 -2.1122 -5.7116 -5.3727 28 6 1.2738 -3.3003 -5.3647 29 1 -0.3634 -1.0275 0.0109 30 1 -0.3633 0.5234 0.8845 31 1 -0.3632 0.5044 -0.8954 32 1 1.8891 -0.1088 2.1180 33 1 1.4965 -1.6666 1.3592 34 1 4.2033 -2.3295 2.5808 35 1 5.2618 -0.9522 2.1926 36 1 3.7866 -0.6972 3.1556 37 1 3.7223 -1.5735 -2.0858 38 1 3.8599 0.1691 -1.7393 39 1 -0.7853 -1.2226 -4.2891 40 1 -1.0352 -2.7105 -3.3337 41 1 -1.2015 -2.3089 -6.3151 42 1 -2.0623 -3.4899 -5.2743 43 1 0.4702 -5.9170 -5.1137 44 1 -1.8521 -5.6884 -9.5256 45 1 2.0658 -4.0023 -5.1036 46 1 1.5987 -2.6439 -6.1721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118248610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:10 Heat of formation + Delta-G solvation = -84.916089 kcal Electronic energy + Delta-G solvation = -31274.848148 eV Core-core repulsion = 26974.256124 eV Total energy + Delta-G solvation = -4300.592024 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51306 -40.16183 -39.00214 -37.80157 -36.87206 -35.35453 -34.49118 -32.49139 -32.46731 -30.54951 -29.04583 -28.55125 -27.26914 -26.10808 -25.66906 -24.24581 -22.79541 -21.66623 -20.07318 -19.80426 -18.87362 -17.98788 -17.48518 -17.14230 -16.65299 -16.39613 -16.07700 -15.90796 -15.67605 -15.31128 -14.98682 -14.81122 -14.58210 -13.83562 -13.73182 -13.66126 -13.48578 -13.14233 -12.98261 -12.85275 -12.78389 -12.64127 -12.60116 -12.45001 -12.13797 -11.92898 -11.79804 -11.69895 -11.52613 -11.09033 -10.65646 -10.58234 -10.45553 -10.32361 -10.18811 -9.19279 -9.04823 -9.00204 -8.90184 -8.76338 -8.63959 -8.24473 -6.27752 -4.41205 1.39890 2.04467 2.34916 2.64915 3.19411 3.26072 3.30832 3.40531 3.62925 4.03648 4.10854 4.29315 4.38256 4.56853 4.68587 4.87932 4.94677 5.01243 5.07622 5.12572 5.15214 5.26115 5.30256 5.34045 5.49129 5.56261 5.58767 5.64514 5.71221 5.78959 5.97178 6.00086 6.05409 6.22133 6.30051 6.42701 6.55869 6.61602 6.73167 7.03537 7.04794 7.33850 7.43771 7.67803 7.83157 8.04145 8.11169 8.66663 8.82398 9.34365 10.82037 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.003008 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.874578 B = 9306.247944 C = 9885.335521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.127 3.873 3 H 0.088 0.912 4 C 0.103 3.897 5 N -0.611 5.611 6 C 0.077 3.923 7 C 0.512 3.488 8 O -0.541 6.541 9 C 0.048 3.952 10 N -0.592 5.592 11 C 0.520 3.480 12 O -0.499 6.499 13 C 0.511 3.489 14 O -0.527 6.527 15 N -0.566 5.566 16 C 0.108 3.892 17 C -0.126 4.126 18 C 0.216 3.784 19 O -0.569 6.569 20 C -0.554 4.554 21 H 0.080 0.920 22 C 0.089 3.911 23 N -0.884 5.884 24 Si 0.862 3.138 25 H -0.285 1.285 26 H -0.298 1.298 27 H -0.211 1.211 28 C 0.089 3.911 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.188 0.812 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.366 0.634 44 H 0.268 0.732 45 H 0.076 0.924 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.315 11.743 20.824 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.024 3.976 3 H 0.106 0.894 4 C -0.021 4.021 5 N -0.345 5.345 6 C -0.066 4.066 7 C 0.300 3.700 8 O -0.418 6.418 9 C -0.075 4.075 10 N -0.329 5.329 11 C 0.303 3.697 12 O -0.373 6.373 13 C 0.295 3.705 14 O -0.408 6.408 15 N -0.297 5.297 16 C -0.014 4.014 17 C -0.164 4.164 18 C 0.176 3.824 19 O -0.376 6.376 20 C -0.591 4.591 21 H 0.098 0.902 22 C -0.116 4.116 23 N -0.520 5.520 24 Si 0.689 3.311 25 H -0.212 1.212 26 H -0.225 1.225 27 H -0.133 1.133 28 C -0.033 4.033 29 H 0.094 0.906 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.088 0.912 37 H 0.204 0.796 38 H 0.120 0.880 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.213 0.787 44 H 0.077 0.923 45 H 0.095 0.905 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.303 11.820 20.950 24.280 hybrid contribution -0.367 -0.411 0.246 0.603 sum 2.936 11.410 21.196 24.251 Atomic orbital electron populations 1.22186 0.90634 1.04341 1.02415 1.21766 0.97373 0.95575 0.82873 0.89386 1.21950 0.80532 1.00979 0.98679 1.47221 1.09741 1.70455 1.07087 1.21743 0.97891 1.01460 0.85467 1.20363 0.86962 0.77070 0.85614 1.90750 1.16893 1.47249 1.86862 1.23330 0.77939 1.09006 0.97267 1.48026 1.06880 1.54499 1.23505 1.20124 0.86273 0.79895 0.83371 1.90807 1.14643 1.58008 1.73841 1.19697 0.85905 0.81792 0.83124 1.90307 1.15052 1.59688 1.75776 1.48462 1.09337 1.49627 1.22248 1.22281 0.78669 1.00320 1.00118 1.22997 0.99388 0.98047 0.95975 1.20135 0.88515 0.83094 0.90669 1.86575 1.55443 1.28787 1.66794 1.21078 1.03578 1.43084 0.91396 0.90205 1.24937 0.98546 0.93540 0.94617 1.69929 1.30933 1.40807 1.10329 0.87298 0.81458 0.77621 0.84727 1.21210 1.22541 1.13296 1.23287 1.00408 0.94571 0.85001 0.90556 0.92785 0.89801 0.89159 0.90989 0.92531 0.90196 0.91197 0.79643 0.87997 0.91240 0.90529 0.89175 0.90645 0.78659 0.92276 0.90525 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 7.58 37.16 0.28 -0.89 16 2 C 0.13 1.07 3.55 -67.52 -0.24 0.83 16 3 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 4 C 0.10 0.76 5.93 -4.51 -0.03 0.73 16 5 N -0.61 -6.04 3.20 -182.93 -0.59 -6.62 16 6 C 0.08 0.61 10.19 59.85 0.61 1.22 16 7 C 0.51 6.58 7.57 -11.91 -0.09 6.49 16 8 O -0.54 -8.74 16.25 5.55 0.09 -8.65 16 9 C 0.05 0.58 6.31 -5.20 -0.03 0.55 16 10 N -0.59 -6.88 2.98 -167.32 -0.50 -7.38 16 11 C 0.52 7.31 7.65 -11.58 -0.09 7.23 16 12 O -0.50 -7.18 9.72 5.50 0.05 -7.13 16 13 C 0.51 8.46 7.82 -11.59 -0.09 8.37 16 14 O -0.53 -9.34 13.37 5.50 0.07 -9.27 16 15 N -0.57 -9.91 3.33 -171.05 -0.57 -10.48 16 16 C 0.11 1.82 5.50 -3.07 -0.02 1.81 16 17 C -0.13 -2.44 5.05 -24.90 -0.13 -2.57 16 18 C 0.22 4.57 0.70 -89.63 -0.06 4.50 16 19 O -0.57 -11.88 9.89 -35.23 -0.35 -12.23 16 20 C -0.55 -14.01 8.82 -34.44 -0.30 -14.32 16 21 H 0.08 2.20 8.03 -52.49 -0.42 1.78 16 22 C 0.09 2.39 5.45 -17.82 -0.10 2.29 16 23 N -0.88 -25.42 13.96 55.43 0.77 -24.64 16 24 Si 0.86 20.17 24.39 -169.99 -4.15 16.02 16 25 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.30 -7.20 7.11 56.52 0.40 -6.79 16 27 H -0.21 -4.76 5.10 56.52 0.29 -4.47 16 28 C 0.09 1.68 6.08 -2.54 -0.02 1.67 16 29 H 0.08 0.79 6.85 -51.93 -0.36 0.43 16 30 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.08 0.85 6.74 -51.93 -0.35 0.50 16 32 H 0.09 0.40 7.85 -51.93 -0.41 -0.01 16 33 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.73 7.23 -51.93 -0.38 0.35 16 36 H 0.07 0.34 7.80 -51.93 -0.41 -0.07 16 37 H 0.19 2.76 4.05 -55.83 -0.23 2.54 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.07 1.06 7.83 -51.93 -0.41 0.65 16 40 H 0.08 1.30 7.45 -51.93 -0.39 0.91 16 41 H 0.09 1.73 8.03 -51.93 -0.42 1.31 16 42 H 0.08 1.50 5.53 -51.93 -0.29 1.21 16 43 H 0.37 6.75 9.06 45.56 0.41 7.16 16 44 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.08 1.45 8.04 -51.93 -0.42 1.03 16 46 H 0.08 1.57 8.03 -51.93 -0.42 1.16 16 LS Contribution 356.07 15.07 5.37 5.37 Total: -1.00 -31.88 356.07 -5.91 -37.79 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.82 Total: 9.32 kcal Atomic # 6 Polarization: 18.20 SS G_CDS: -0.30 Total: 17.90 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.88 Total: -49.12 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.13 Total: -37.27 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.15 Total: 16.02 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.88 -5.91 -37.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118248610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.131 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds