Wall clock time and date at job start Sat Apr 11 2020 05:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.71615 * 2 1 4 4 C 1.52989 * 109.75337 * 120.63489 * 2 1 3 5 5 N 1.45647 * 110.77091 * 166.42035 * 4 2 1 6 6 C 1.46497 * 117.70329 * 158.10098 * 5 4 2 7 7 C 1.33374 * 124.58976 * 338.07189 * 5 4 2 8 8 O 1.21289 * 118.48932 * 184.34349 * 7 5 4 9 9 C 1.50074 * 123.00989 * 4.17445 * 7 5 4 10 10 N 1.47047 * 109.08486 * 347.58207 * 9 7 5 11 11 C 1.34783 * 121.35426 * 222.69057 * 10 9 7 12 12 O 1.21349 * 119.99603 * 184.22615 * 11 10 9 13 13 C 1.49447 * 119.99925 * 4.23123 * 11 10 9 14 14 O 1.21351 * 120.00274 * 6.13516 * 13 11 10 15 15 N 1.34776 * 119.99983 * 186.13356 * 13 11 10 16 16 C 1.47023 * 125.64736 * 0.04282 * 15 13 11 17 17 C 1.54318 * 107.27243 * 181.02357 * 16 15 13 18 18 C 1.55157 * 102.94153 * 22.19387 * 17 16 15 19 19 O 1.42893 * 111.00733 * 82.57355 * 18 17 16 20 20 C 1.50707 * 111.00508 * 206.42596 * 18 17 16 21 21 H 1.07994 * 120.00187 * 116.75548 * 20 18 17 22 22 C 1.37876 * 119.99660 * 296.75242 * 20 18 17 23 23 N 1.31518 * 119.99924 * 175.87628 * 22 20 18 24 24 Si 1.86798 * 120.00201 * 355.88292 * 22 20 18 25 25 H 1.48505 * 109.46930 * 94.66637 * 24 22 20 26 26 H 1.48501 * 109.47244 * 214.66485 * 24 22 20 27 27 H 1.48493 * 109.47148 * 334.66713 * 24 22 20 28 28 C 1.47416 * 125.64955 * 180.02562 * 15 13 11 29 29 H 1.08994 * 109.47358 * 180.60921 * 1 2 3 30 30 H 1.09008 * 109.46844 * 300.61521 * 1 2 3 31 31 H 1.09000 * 109.46611 * 60.60710 * 1 2 3 32 32 H 1.09004 * 109.21675 * 286.75386 * 4 2 1 33 33 H 1.08998 * 109.21725 * 46.08339 * 4 2 1 34 34 H 1.08996 * 109.47662 * 89.99881 * 6 5 4 35 35 H 1.09005 * 109.47227 * 209.99514 * 6 5 4 36 36 H 1.09002 * 109.47143 * 329.99678 * 6 5 4 37 37 H 1.09004 * 109.52690 * 227.66866 * 9 7 5 38 38 H 1.08993 * 109.41605 * 107.43409 * 9 7 5 39 39 H 1.08997 * 109.88152 * 61.60510 * 16 15 13 40 40 H 1.09004 * 109.88332 * 300.43737 * 16 15 13 41 41 H 1.08998 * 110.72383 * 263.83138 * 17 16 15 42 42 H 1.08998 * 110.72325 * 140.55219 * 17 16 15 43 43 H 0.96703 * 114.00141 * 180.02562 * 19 18 17 44 44 H 0.96999 * 120.00236 * 180.02562 * 23 22 20 45 45 H 1.09003 * 110.37039 * 37.06603 * 28 15 13 46 46 H 1.09003 * 110.36754 * 274.74732 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8978 1.0261 0.0000 4 6 2.0471 -0.7337 1.2389 5 7 3.4675 -1.0286 1.1093 6 6 4.2285 -1.2671 2.3382 7 6 4.1239 -1.0971 -0.0497 8 8 5.2903 -1.4294 -0.0352 9 6 3.4844 -0.7856 -1.3712 10 7 2.0269 -0.7059 -1.1931 11 6 1.1803 -1.2613 -2.0827 12 8 -0.0174 -1.1154 -1.9531 13 6 1.7166 -2.0568 -3.2286 14 8 2.9041 -2.2969 -3.2975 15 7 0.8814 -2.5075 -4.1855 16 6 -0.5721 -2.2897 -4.2263 17 6 -1.1078 -3.0069 -5.4832 18 6 -0.0099 -4.0639 -5.7746 19 8 -0.1927 -5.2284 -4.9668 20 6 0.0191 -4.4234 -7.2379 21 1 0.8971 -4.2095 -7.8292 22 6 -1.0754 -5.0253 -7.8217 23 7 -1.0820 -5.2653 -9.1148 24 14 -2.5488 -5.4998 -6.7761 25 1 -3.5588 -4.4121 -6.8215 26 1 -3.1467 -6.7529 -7.3030 27 1 -2.1122 -5.7116 -5.3727 28 6 1.2738 -3.3003 -5.3647 29 1 -0.3634 -1.0275 0.0109 30 1 -0.3633 0.5234 0.8845 31 1 -0.3632 0.5044 -0.8954 32 1 1.8891 -0.1088 2.1180 33 1 1.4965 -1.6666 1.3592 34 1 4.2033 -2.3295 2.5808 35 1 5.2618 -0.9522 2.1926 36 1 3.7866 -0.6972 3.1556 37 1 3.7223 -1.5735 -2.0858 38 1 3.8599 0.1691 -1.7393 39 1 -0.7853 -1.2226 -4.2891 40 1 -1.0352 -2.7105 -3.3337 41 1 -1.2015 -2.3089 -6.3151 42 1 -2.0623 -3.4899 -5.2743 43 1 0.4702 -5.9170 -5.1137 44 1 -1.8521 -5.6884 -9.5256 45 1 2.0658 -4.0023 -5.1036 46 1 1.5987 -2.6439 -6.1721 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118248610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:10 Heat of formation + Delta-G solvation = -111.084653 kcal Electronic energy + Delta-G solvation = -31275.982902 eV Core-core repulsion = 26974.256124 eV Total energy + Delta-G solvation = -4301.726778 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.53747 -41.28467 -40.22121 -39.23019 -37.84346 -36.52861 -35.75855 -34.49908 -33.27414 -32.10809 -30.10535 -29.92484 -28.16545 -27.52041 -26.49770 -25.50167 -24.08701 -22.75779 -21.59238 -21.01751 -19.93253 -19.40282 -18.85209 -18.08696 -17.89907 -17.34398 -17.29861 -16.97179 -16.83366 -16.62393 -16.41635 -16.22168 -15.80183 -15.25713 -14.96307 -14.73439 -14.62511 -14.48294 -14.26851 -14.03667 -13.96144 -13.63142 -13.52799 -13.39260 -13.27424 -13.24178 -13.13138 -12.77963 -12.57306 -12.52161 -12.33063 -12.24339 -11.89946 -11.68414 -11.39043 -10.89780 -10.80064 -10.33109 -10.06992 -9.96110 -9.85520 -9.71457 -8.35579 -6.51253 0.21695 0.99645 1.38606 1.39730 1.49367 1.76011 1.82273 2.00217 2.15927 2.41975 2.92320 3.01545 3.26523 3.53827 3.58176 3.77668 3.93002 3.96751 4.04995 4.16939 4.21904 4.31543 4.38193 4.42400 4.51912 4.55358 4.65698 4.69842 4.73103 4.79414 4.90318 4.92717 5.00127 5.04860 5.08643 5.11898 5.30683 5.36904 5.51406 5.52171 5.74564 6.05921 6.13013 6.23871 6.49000 6.60455 6.80323 6.91504 7.11697 7.29810 8.77959 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022817 B = 0.003008 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1226.874578 B = 9306.247944 C = 9885.335521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.123 3.877 3 H 0.113 0.887 4 C 0.101 3.899 5 N -0.606 5.606 6 C 0.074 3.926 7 C 0.508 3.492 8 O -0.584 6.584 9 C 0.052 3.948 10 N -0.584 5.584 11 C 0.525 3.475 12 O -0.501 6.501 13 C 0.506 3.494 14 O -0.543 6.543 15 N -0.573 5.573 16 C 0.121 3.879 17 C -0.127 4.127 18 C 0.215 3.785 19 O -0.571 6.571 20 C -0.548 4.548 21 H 0.044 0.956 22 C 0.040 3.960 23 N -0.934 5.934 24 Si 0.922 3.078 25 H -0.277 1.277 26 H -0.309 1.309 27 H -0.195 1.195 28 C 0.097 3.903 29 H 0.056 0.944 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.134 0.866 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.162 0.838 38 H 0.121 0.879 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.376 0.624 44 H 0.268 0.732 45 H 0.073 0.927 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.095 13.528 24.588 28.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.022 3.978 3 H 0.131 0.869 4 C -0.022 4.022 5 N -0.338 5.338 6 C -0.068 4.068 7 C 0.296 3.704 8 O -0.465 6.465 9 C -0.072 4.072 10 N -0.320 5.320 11 C 0.307 3.693 12 O -0.377 6.377 13 C 0.291 3.709 14 O -0.425 6.425 15 N -0.304 5.304 16 C -0.001 4.001 17 C -0.165 4.165 18 C 0.175 3.825 19 O -0.379 6.379 20 C -0.586 4.586 21 H 0.062 0.938 22 C -0.161 4.161 23 N -0.572 5.572 24 Si 0.747 3.253 25 H -0.203 1.203 26 H -0.237 1.237 27 H -0.117 1.117 28 C -0.025 4.025 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.178 0.822 38 H 0.139 0.861 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.093 0.907 43 H 0.225 0.775 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.073 13.637 24.784 28.364 hybrid contribution 0.128 -0.939 -0.877 1.291 sum 2.202 12.698 23.907 27.160 Atomic orbital electron populations 1.22062 0.90286 1.03295 1.03194 1.22115 0.97610 0.96521 0.81575 0.86949 1.22184 0.78620 1.01719 0.99670 1.47332 1.10866 1.68802 1.06778 1.21900 0.97308 1.02016 0.85586 1.20410 0.86531 0.76921 0.86560 1.90731 1.18730 1.49527 1.87504 1.23103 0.78347 1.09034 0.96730 1.48062 1.06314 1.53769 1.23894 1.19605 0.86375 0.80180 0.83161 1.90824 1.14544 1.58387 1.73900 1.20350 0.85611 0.81536 0.83447 1.90351 1.15811 1.60072 1.76251 1.48453 1.09771 1.50018 1.22188 1.22197 0.78033 1.01169 0.98700 1.22953 0.98701 0.97566 0.97311 1.19989 0.90618 0.83728 0.88210 1.86520 1.56088 1.29034 1.66236 1.21294 1.01917 1.41824 0.93528 0.93773 1.25699 1.01336 0.93729 0.95357 1.70056 1.32017 1.42933 1.12244 0.86377 0.78321 0.76834 0.83720 1.20328 1.23728 1.11689 1.22959 0.99225 0.94505 0.85818 0.92505 0.89414 0.91507 0.84778 0.91167 0.92791 0.91814 0.87209 0.82215 0.86102 0.89249 0.90108 0.89411 0.90668 0.77537 0.92326 0.90883 0.90663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.71 7.58 71.98 0.55 -1.17 16 2 C 0.12 1.59 3.55 44.84 0.16 1.75 16 3 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 4 C 0.10 1.04 5.93 86.54 0.51 1.56 16 5 N -0.61 -10.24 3.20 -851.85 -2.73 -12.97 16 6 C 0.07 0.96 10.19 127.77 1.30 2.26 16 7 C 0.51 12.41 7.57 87.68 0.66 13.07 16 8 O -0.58 -18.91 16.25 -3.06 -0.05 -18.96 16 9 C 0.05 1.20 6.31 85.33 0.54 1.74 16 10 N -0.58 -12.23 2.98 -801.63 -2.39 -14.63 16 11 C 0.52 13.80 7.65 87.27 0.67 14.46 16 12 O -0.50 -13.26 9.72 -3.24 -0.03 -13.29 16 13 C 0.51 16.31 7.82 87.27 0.68 17.00 16 14 O -0.54 -19.30 13.37 -3.25 -0.04 -19.34 16 15 N -0.57 -19.54 3.33 -813.43 -2.71 -22.25 16 16 C 0.12 3.84 5.50 86.73 0.48 4.31 16 17 C -0.13 -4.76 5.05 31.78 0.16 -4.60 16 18 C 0.22 9.02 0.70 -10.15 -0.01 9.01 16 19 O -0.57 -23.11 9.89 -148.98 -1.47 -24.59 16 20 C -0.55 -28.36 8.82 25.60 0.23 -28.13 16 21 H 0.04 2.55 8.03 -2.91 -0.02 2.52 16 22 C 0.04 2.14 5.45 84.65 0.46 2.60 16 23 N -0.93 -55.31 13.96 21.45 0.30 -55.01 16 24 Si 0.92 41.74 24.39 68.60 1.67 43.41 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.31 -14.48 7.11 99.48 0.71 -13.78 16 27 H -0.20 -8.28 5.10 99.48 0.51 -7.77 16 28 C 0.10 3.71 6.08 86.85 0.53 4.24 16 29 H 0.06 1.00 6.85 -2.39 -0.02 0.98 16 30 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.07 1.15 6.74 -2.39 -0.02 1.13 16 32 H 0.13 0.33 7.85 -2.39 -0.02 0.31 16 33 H 0.07 0.83 8.07 -2.39 -0.02 0.81 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.06 1.07 7.23 -2.38 -0.02 1.05 16 36 H 0.11 0.55 7.80 -2.39 -0.02 0.53 16 37 H 0.16 4.77 4.05 -64.26 -0.26 4.51 16 38 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.09 2.50 7.83 -2.39 -0.02 2.49 16 40 H 0.08 2.54 7.45 -2.39 -0.02 2.52 16 41 H 0.09 3.30 8.03 -2.39 -0.02 3.28 16 42 H 0.07 2.82 5.53 -2.39 -0.01 2.81 16 43 H 0.38 13.56 9.06 -74.05 -0.67 12.88 16 44 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 45 H 0.07 2.81 8.04 -2.39 -0.02 2.79 16 46 H 0.08 2.95 8.03 -2.39 -0.02 2.93 16 Total: -1.00 -71.52 356.07 -0.63 -72.15 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.09 Total: 27.37 kcal Atomic # 6 Polarization: 31.19 SS G_CDS: 6.92 Total: 38.10 kcal Atomic # 7 Polarization: -97.33 SS G_CDS: -7.53 Total: -104.85 kcal Atomic # 8 Polarization: -74.59 SS G_CDS: -1.60 Total: -76.19 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 1.67 Total: 43.41 kcal Total: -71.52 -0.63 -72.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118248610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.935 kcal (2) G-P(sol) polarization free energy of solvation -71.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds