Wall clock time and date at job start Sat Apr 11 2020 05:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34785 * 119.99983 * 2 1 4 4 O 1.21347 * 119.99635 * 176.42982 * 3 2 1 5 5 C 1.49449 * 119.99751 * 356.43804 * 3 2 1 6 6 O 1.21353 * 120.00218 * 5.94073 * 5 3 2 7 7 N 1.34774 * 119.99751 * 185.94595 * 5 3 2 8 8 C 1.47027 * 125.64820 * 0.02562 * 7 5 3 9 9 C 1.54323 * 107.27121 * 181.02356 * 8 7 5 10 10 C 1.55158 * 102.94132 * 22.19135 * 9 8 7 11 11 O 1.42900 * 110.99965 * 82.57836 * 10 9 8 12 12 C 1.50702 * 111.00371 * 206.38221 * 10 9 8 13 13 H 1.08006 * 119.99717 * 115.05198 * 12 10 9 14 14 C 1.37877 * 120.00351 * 295.05406 * 12 10 9 15 15 N 1.31518 * 120.00047 * 185.03180 * 14 12 10 16 16 Si 1.86794 * 119.99845 * 5.03147 * 14 12 10 17 17 H 1.48505 * 109.47063 * 94.83645 * 16 14 12 18 18 H 1.48497 * 109.47069 * 214.83640 * 16 14 12 19 19 H 1.48498 * 109.47348 * 334.84033 * 16 14 12 20 20 C 1.47427 * 125.65188 * 179.71268 * 7 5 3 21 21 C 1.46500 * 120.00100 * 180.02562 * 2 1 3 22 22 H 1.09004 * 112.90672 * 191.25170 * 21 2 1 23 23 C 1.53783 * 113.61310 * 322.50164 * 21 2 1 24 24 C 1.54049 * 87.07849 * 139.97839 * 23 21 2 25 25 H 1.08997 * 113.61595 * 89.06958 * 24 23 21 26 26 C 1.50691 * 113.69690 * 220.05454 * 24 23 21 27 27 N 1.34778 * 119.99926 * 277.42256 * 26 24 23 28 28 O 1.21288 * 120.00429 * 97.42079 * 26 24 23 29 29 C 1.53782 * 113.61606 * 59.99864 * 21 2 1 30 30 H 1.08993 * 109.46918 * 275.96720 * 1 2 3 31 31 H 1.09003 * 109.46684 * 35.96560 * 1 2 3 32 32 H 1.08997 * 109.47041 * 155.96421 * 1 2 3 33 33 H 1.08988 * 109.88323 * 300.44194 * 8 7 5 34 34 H 1.09005 * 109.88053 * 61.45466 * 8 7 5 35 35 H 1.08998 * 110.72180 * 140.56197 * 9 8 7 36 36 H 1.09009 * 110.72222 * 263.65274 * 9 8 7 37 37 H 0.96700 * 113.99717 * 180.02562 * 11 10 9 38 38 H 0.96994 * 120.00058 * 180.02562 * 15 14 12 39 39 H 1.08998 * 110.36885 * 274.74981 * 20 7 5 40 40 H 1.09008 * 110.36250 * 37.06858 * 20 7 5 41 41 H 1.08996 * 113.61341 * 254.53079 * 23 21 2 42 42 H 1.09000 * 113.61378 * 25.43147 * 23 21 2 43 43 H 0.97000 * 120.00082 * 359.97438 * 27 26 24 44 44 H 0.96998 * 119.99915 * 180.02562 * 27 26 24 45 45 H 1.09001 * 113.61182 * 334.57208 * 29 21 2 46 46 H 1.08997 * 113.61152 * 105.38912 * 29 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1673 0.0000 4 8 3.3507 1.1682 0.0654 5 6 1.3938 2.4603 -0.0804 6 8 0.1811 2.4654 -0.0370 7 7 2.0688 3.6205 -0.2013 8 6 3.5311 3.7584 -0.2663 9 6 3.8448 5.2654 -0.3762 10 6 2.5673 5.9294 0.2024 11 8 2.6129 5.9695 1.6301 12 6 2.3708 7.3104 -0.3678 13 1 1.5137 7.5206 -0.9906 14 6 3.2850 8.3057 -0.0946 15 7 3.0632 9.5341 -0.5089 16 14 4.8384 7.9094 0.8640 17 1 5.9483 7.6346 -0.0837 18 1 5.1972 9.0650 1.7248 19 1 4.6048 6.7135 1.7128 20 6 1.4629 4.9612 -0.2967 21 6 2.1976 -1.2687 -0.0006 22 1 3.2625 -1.1438 0.1954 23 6 1.5374 -2.3615 0.8567 24 6 1.9136 -3.3541 -0.2598 25 1 2.9010 -3.7983 -0.1346 26 6 0.8434 -4.3750 -0.5484 27 7 0.7423 -5.4799 0.2167 28 8 0.0731 -4.2023 -1.4691 29 6 1.8955 -2.1540 -1.2212 30 1 -0.3633 0.1068 1.0220 31 1 -0.3633 0.8318 -0.6036 32 1 -0.3633 -0.9385 -0.4186 33 1 3.9824 3.3509 0.6382 34 1 3.9145 3.2329 -1.1410 35 1 4.7182 5.5223 0.2231 36 1 3.9947 5.5533 -1.4169 37 1 1.8353 6.3756 2.0371 38 1 3.7065 10.2342 -0.3170 39 1 1.1975 5.1849 -1.3300 40 1 0.5836 5.0265 0.3443 41 1 2.0528 -2.5482 1.7988 42 1 0.4625 -2.2299 0.9800 43 1 1.3586 -5.6182 0.9529 44 1 0.0537 -6.1372 0.0307 45 1 0.9183 -1.9656 -1.6661 46 1 2.6993 -2.1719 -1.9572 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118897902.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:23 Heat of formation + Delta-G solvation = -100.797105 kcal Electronic energy + Delta-G solvation = -30246.271038 eV Core-core repulsion = 25944.990362 eV Total energy + Delta-G solvation = -4301.280676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.20989 -40.29024 -38.91545 -37.76101 -37.52155 -34.99241 -34.19488 -33.94165 -32.44327 -30.45568 -28.50261 -27.58003 -26.99878 -26.14341 -25.66851 -23.71734 -22.32722 -20.92993 -19.86502 -19.56575 -19.28604 -18.03336 -17.54852 -17.34169 -16.99962 -16.68277 -16.19419 -15.84200 -15.77276 -15.06176 -14.88419 -14.70926 -14.58142 -14.47348 -13.71089 -13.44385 -13.37233 -13.18756 -12.89994 -12.81509 -12.60728 -12.54501 -12.38575 -12.13405 -11.81916 -11.69979 -11.48265 -11.36320 -11.06462 -11.03682 -10.85060 -10.61659 -10.36523 -10.28057 -10.15608 -10.06929 -9.13778 -9.02535 -8.88879 -8.75284 -8.55735 -8.16576 -6.25307 -4.37926 1.58692 2.15746 2.35470 3.09049 3.29357 3.34358 3.41417 3.54206 3.60718 3.93448 4.01920 4.34761 4.36704 4.40019 4.41617 4.70349 5.03760 5.04702 5.11070 5.18683 5.21839 5.31091 5.38657 5.39921 5.55341 5.59972 5.65546 5.72968 5.77825 5.99741 6.04145 6.13312 6.24976 6.30913 6.37006 6.50293 6.61414 6.68559 6.85339 6.99556 7.08942 7.40134 7.58557 7.80525 7.81667 8.13949 8.20485 8.69934 8.87479 9.37325 10.84670 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.034000 B = 0.002331 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.334232 B =12006.916811 C =12357.400349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.581 5.581 3 C 0.511 3.489 4 O -0.516 6.516 5 C 0.512 3.488 6 O -0.531 6.531 7 N -0.573 5.573 8 C 0.110 3.890 9 C -0.131 4.131 10 C 0.218 3.782 11 O -0.569 6.569 12 C -0.552 4.552 13 H 0.080 0.920 14 C 0.089 3.911 15 N -0.885 5.885 16 Si 0.869 3.131 17 H -0.285 1.285 18 H -0.297 1.297 19 H -0.221 1.221 20 C 0.091 3.909 21 C 0.120 3.880 22 H 0.127 0.873 23 C -0.131 4.131 24 C -0.138 4.138 25 H 0.119 0.881 26 C 0.529 3.471 27 N -0.855 5.855 28 O -0.539 6.539 29 C -0.129 4.129 30 H 0.059 0.941 31 H 0.111 0.889 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.366 0.634 38 H 0.267 0.733 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.095 0.905 43 H 0.402 0.598 44 H 0.401 0.599 45 H 0.102 0.898 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.273 -27.339 3.474 27.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.314 5.314 3 C 0.295 3.705 4 O -0.391 6.391 5 C 0.295 3.705 6 O -0.411 6.411 7 N -0.304 5.304 8 C -0.012 4.012 9 C -0.169 4.169 10 C 0.177 3.823 11 O -0.376 6.376 12 C -0.590 4.590 13 H 0.098 0.902 14 C -0.116 4.116 15 N -0.520 5.520 16 Si 0.697 3.303 17 H -0.212 1.212 18 H -0.224 1.224 19 H -0.143 1.143 20 C -0.031 4.031 21 C 0.016 3.984 22 H 0.145 0.855 23 C -0.170 4.170 24 C -0.160 4.160 25 H 0.137 0.863 26 C 0.314 3.686 27 N -0.419 5.419 28 O -0.415 6.415 29 C -0.168 4.168 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.213 0.787 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.230 0.770 44 H 0.231 0.769 45 H 0.121 0.879 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.068 -27.208 2.789 27.371 hybrid contribution 0.335 -0.264 0.798 0.905 sum -0.733 -27.472 3.586 27.715 Atomic orbital electron populations 1.22396 0.77650 1.04303 1.03501 1.47610 1.08044 1.04429 1.71297 1.20314 0.87515 0.85208 0.77510 1.90729 1.13501 1.87096 1.47759 1.19562 0.87118 0.84214 0.79560 1.90628 1.13151 1.86064 1.51224 1.48452 1.09126 1.06024 1.66846 1.22217 0.78996 0.97951 1.02045 1.23107 0.99475 0.91944 1.02358 1.20128 0.89486 0.93245 0.79436 1.86511 1.46091 1.83927 1.21049 1.21109 1.11927 0.91979 1.33973 0.90204 1.24935 0.98271 0.94368 0.94046 1.69932 1.36111 1.00953 1.45039 0.87138 0.82236 0.79793 0.81171 1.21200 1.22416 1.14346 1.23258 0.98301 0.79371 1.02125 1.22648 0.98261 0.81084 0.96383 0.85549 1.23427 1.02686 0.93646 0.97231 1.22610 0.99000 0.94132 1.00284 0.86283 1.20406 0.84931 0.81994 0.81311 1.43894 1.38223 1.24135 1.35609 1.90766 1.43661 1.76790 1.30297 1.23373 1.04515 0.92082 0.96787 0.92281 0.87098 0.91570 0.90730 0.91479 0.90474 0.89292 0.78695 0.92305 0.90208 0.90704 0.89670 0.88677 0.76969 0.76885 0.87923 0.90049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 8.27 59.85 0.50 1.21 16 2 N -0.58 -7.16 3.08 -173.50 -0.53 -7.70 16 3 C 0.51 7.98 7.69 -11.58 -0.09 7.89 16 4 O -0.52 -8.72 13.64 5.50 0.07 -8.64 16 5 C 0.51 9.05 7.80 -11.59 -0.09 8.96 16 6 O -0.53 -9.74 13.40 5.49 0.07 -9.66 16 7 N -0.57 -10.72 3.32 -170.89 -0.57 -11.29 16 8 C 0.11 2.01 5.50 -3.06 -0.02 1.99 16 9 C -0.13 -2.66 4.86 -24.90 -0.12 -2.78 16 10 C 0.22 4.77 0.71 -89.50 -0.06 4.70 16 11 O -0.57 -12.35 10.36 -35.23 -0.37 -12.72 16 12 C -0.55 -14.28 8.82 -34.44 -0.30 -14.58 16 13 H 0.08 2.23 8.03 -52.48 -0.42 1.81 16 14 C 0.09 2.43 5.47 -17.82 -0.10 2.33 16 15 N -0.88 -25.68 13.96 55.43 0.77 -24.91 16 16 Si 0.87 20.72 24.46 -169.99 -4.16 16.56 16 17 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.22 -5.12 4.87 56.52 0.28 -4.85 16 20 C 0.09 1.81 6.09 -2.41 -0.01 1.79 16 21 C 0.12 1.12 4.22 -67.12 -0.28 0.84 16 22 H 0.13 1.23 7.22 -51.93 -0.37 0.86 16 23 C -0.13 -0.86 7.04 -25.78 -0.18 -1.04 16 24 C -0.14 -0.85 4.16 -90.82 -0.38 -1.22 16 25 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 26 C 0.53 4.08 7.63 -10.99 -0.08 4.00 16 27 N -0.86 -3.31 8.87 31.22 0.28 -3.03 16 28 O -0.54 -6.66 16.74 5.55 0.09 -6.57 16 29 C -0.13 -1.11 6.91 -25.92 -0.18 -1.29 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.11 1.49 5.36 -51.93 -0.28 1.21 16 32 H 0.07 0.63 6.11 -51.93 -0.32 0.31 16 33 H 0.07 1.39 7.45 -51.94 -0.39 1.00 16 34 H 0.07 1.13 7.82 -51.93 -0.41 0.72 16 35 H 0.08 1.60 4.95 -51.93 -0.26 1.34 16 36 H 0.09 1.77 8.04 -51.92 -0.42 1.35 16 37 H 0.37 6.99 9.06 45.56 0.41 7.41 16 38 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 39 H 0.08 1.59 8.03 -51.93 -0.42 1.17 16 40 H 0.07 1.47 8.04 -51.92 -0.42 1.05 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.68 6.54 -51.93 -0.34 0.34 16 43 H 0.40 0.38 8.83 -40.82 -0.36 0.02 16 44 H 0.40 1.32 8.93 -40.82 -0.36 0.95 16 45 H 0.10 1.07 6.30 -51.93 -0.33 0.74 16 46 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -34.01 363.68 -5.88 -39.90 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.62 Total: 9.77 kcal Atomic # 6 Polarization: 14.21 SS G_CDS: -1.41 Total: 12.81 kcal Atomic # 7 Polarization: -46.87 SS G_CDS: -0.05 Total: -46.92 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.12 Total: -37.59 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.16 Total: 16.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -34.01 -5.88 -39.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118897902.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.900 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds