Wall clock time and date at job start Sat Apr 11 2020 05:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46506 * 109.47050 * 2 1 4 4 C 1.34978 * 125.96828 * 124.97940 * 3 2 1 5 5 C 1.35218 * 107.87116 * 179.75369 * 4 3 2 6 6 C 1.40450 * 107.86960 * 0.39235 * 5 4 3 7 7 N 1.39972 * 125.98618 * 179.86522 * 6 5 4 8 8 C 1.37913 * 119.99604 * 359.72017 * 7 6 5 9 9 N 1.31892 * 126.33231 * 359.97438 * 8 7 6 10 10 N 1.28528 * 110.07221 * 179.76575 * 9 8 7 11 11 C 1.31860 * 109.84392 * 0.39751 * 10 9 8 12 12 C 1.46861 * 126.48706 * 179.88381 * 11 10 9 13 13 N 1.33082 * 120.33776 * 179.70631 * 12 11 10 14 14 C 1.31459 * 121.62941 * 179.97438 * 13 12 11 15 15 C 1.38879 * 122.19198 * 0.02562 * 14 13 12 16 16 C 1.36695 * 120.45006 * 359.73113 * 15 14 13 17 17 C 1.41276 * 118.38111 * 0.51414 * 16 15 14 18 18 C 1.40648 * 120.98905 * 179.77726 * 17 16 15 19 19 H 1.08007 * 120.00183 * 210.01248 * 18 17 16 20 20 C 1.39972 * 120.00419 * 30.01249 * 18 17 16 21 21 N 1.30835 * 119.99748 * 10.39933 * 20 18 17 22 22 Si 1.86797 * 120.00401 * 190.39973 * 20 18 17 23 23 H 1.48496 * 109.47440 * 265.13469 * 22 20 18 24 24 H 1.48503 * 109.46820 * 25.13290 * 22 20 18 25 25 H 1.48500 * 109.47151 * 145.13193 * 22 20 18 26 26 N 1.36351 * 126.33123 * 180.02562 * 8 7 6 27 27 C 1.46500 * 127.13740 * 0.02633 * 26 8 7 28 28 N 1.31270 * 108.03742 * 359.60454 * 6 5 4 29 29 H 1.09003 * 109.47117 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46896 * 299.99454 * 1 2 3 31 31 H 1.08995 * 109.47787 * 59.99434 * 1 2 3 32 32 H 1.09001 * 109.46601 * 240.00447 * 2 1 3 33 33 H 1.08997 * 109.47314 * 120.00337 * 2 1 3 34 34 H 1.07999 * 126.06450 * 359.97438 * 4 3 2 35 35 H 1.08006 * 126.07005 * 180.23990 * 5 4 3 36 36 H 0.96999 * 120.00679 * 179.71589 * 7 6 5 37 37 H 1.07992 * 118.90952 * 179.97438 * 14 13 12 38 38 H 1.07995 * 119.76821 * 180.02562 * 15 14 13 39 39 H 1.07998 * 120.80752 * 180.28466 * 16 15 14 40 40 H 0.96996 * 120.00178 * 180.02562 * 21 20 18 41 41 H 1.09005 * 109.47379 * 269.95946 * 27 26 8 42 42 H 1.09002 * 109.47456 * 29.96103 * 27 26 8 43 43 H 1.09000 * 109.47143 * 149.96531 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8731 1.9200 0.8951 5 6 3.0787 3.2105 0.5478 6 6 2.3134 3.4752 -0.5998 7 7 2.2432 4.6979 -1.2775 8 6 2.9649 5.7812 -0.8220 9 7 3.7560 5.8053 0.2331 10 7 4.2761 6.9729 0.3679 11 6 3.8419 7.7695 -0.5890 12 6 4.2008 9.1806 -0.7804 13 7 3.6916 9.8717 -1.7974 14 6 3.9950 11.1359 -1.9924 15 6 4.8613 11.8265 -1.1550 16 6 5.4306 11.2025 -0.0803 17 6 5.1238 9.8422 0.1465 18 6 5.6823 9.1452 1.2329 19 1 5.8610 8.0826 1.1586 20 6 6.0068 9.8286 2.4106 21 7 5.6089 11.0633 2.5813 22 14 7.0078 8.9780 3.7387 23 1 6.0918 8.3899 4.7487 24 1 7.8274 7.9011 3.1273 25 1 7.9000 9.9666 4.3957 26 7 2.9918 7.0257 -1.3784 27 6 2.2671 7.4782 -2.5685 28 7 1.6798 2.3736 -0.9288 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.3170 1.4097 1.7371 35 1 3.7163 3.9138 1.0629 36 1 1.6870 4.7833 -2.0676 37 1 3.5566 11.6544 -2.8321 38 1 5.0829 12.8651 -1.3516 39 1 6.1015 11.7353 0.5773 40 1 5.8340 11.5370 3.3972 41 1 2.8809 7.3102 -3.4535 42 1 1.3356 6.9197 -2.6610 43 1 2.0456 8.5415 -2.4766 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121322911.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:26 Heat of formation + Delta-G solvation = 210.341327 kcal Electronic energy + Delta-G solvation = -28317.865810 eV Core-core repulsion = 24401.971530 eV Total energy + Delta-G solvation = -3915.894279 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.150 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.94540 -40.94100 -38.07619 -36.20682 -34.49927 -34.07287 -33.58832 -31.09789 -30.65967 -30.00598 -28.75867 -27.70631 -26.95632 -25.73459 -23.76110 -22.81350 -21.95841 -21.26450 -20.91192 -19.94657 -19.45842 -17.46280 -17.26906 -17.11125 -16.12038 -15.82366 -15.63014 -15.50188 -15.02076 -14.81605 -14.30476 -14.08422 -13.92936 -13.53088 -13.00891 -12.92280 -12.80583 -12.68413 -12.43128 -12.32147 -12.26521 -11.93092 -11.69112 -11.50098 -11.46429 -11.22344 -11.07306 -10.81794 -10.51591 -10.33018 -9.73906 -9.50336 -9.46648 -9.35795 -9.18766 -8.54376 -8.35476 -8.18677 -7.74122 -7.03931 -6.84591 -4.53018 1.86672 2.09087 2.10164 2.68220 2.87343 2.93383 3.05167 3.13527 3.19748 3.40528 3.67241 3.86966 3.92435 4.44415 4.56658 4.75807 4.87175 4.97149 5.02805 5.21036 5.29968 5.32179 5.50514 5.56045 5.60154 5.62425 5.77672 5.87562 5.95092 6.02730 6.18066 6.25887 6.38410 6.54903 6.70155 6.78208 6.86509 6.96267 7.05318 7.21197 7.26676 7.50949 7.59781 7.65475 7.78755 7.89569 8.08656 8.46427 8.56349 8.63819 9.36797 9.68901 9.90857 Molecular weight = 339.15amu Principal moments of inertia in cm(-1) A = 0.013363 B = 0.003131 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.792397 B = 8940.566354 C =10870.205684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 N -0.378 5.378 4 C 0.059 3.941 5 C -0.265 4.265 6 C 0.335 3.665 7 N -0.604 5.604 8 C 0.397 3.603 9 N -0.323 5.323 10 N -0.270 5.270 11 C 0.293 3.707 12 C 0.011 3.989 13 N -0.449 5.449 14 C -0.038 4.038 15 C -0.141 4.141 16 C -0.125 4.125 17 C 0.099 3.901 18 C -0.388 4.388 19 H 0.120 0.880 20 C 0.068 3.932 21 N -0.778 5.778 22 Si 0.923 3.077 23 H -0.265 1.265 24 H -0.253 1.253 25 H -0.276 1.276 26 N -0.493 5.493 27 C 0.084 3.916 28 N -0.342 5.342 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.174 0.826 35 H 0.180 0.820 36 H 0.415 0.585 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.129 0.871 40 H 0.287 0.713 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.737 -13.531 -3.454 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.017 3.983 3 N -0.163 5.163 4 C -0.086 4.086 5 C -0.297 4.297 6 C 0.078 3.922 7 N -0.242 5.242 8 C 0.041 3.959 9 N -0.170 5.170 10 N -0.110 5.110 11 C 0.031 3.969 12 C -0.128 4.128 13 N -0.158 5.158 14 C -0.202 4.202 15 C -0.162 4.162 16 C -0.151 4.151 17 C 0.091 3.909 18 C -0.416 4.416 19 H 0.137 0.863 20 C -0.153 4.153 21 N -0.401 5.401 22 Si 0.746 3.254 23 H -0.189 1.189 24 H -0.176 1.176 25 H -0.202 1.202 26 N -0.192 5.192 27 C -0.059 4.059 28 N -0.173 5.173 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.191 0.809 35 H 0.197 0.803 36 H 0.252 0.748 37 H 0.139 0.861 38 H 0.117 0.883 39 H 0.146 0.854 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.333 -14.977 -3.301 16.593 hybrid contribution 0.315 1.153 0.089 1.199 sum -6.018 -13.824 -3.212 15.416 Atomic orbital electron populations 1.22058 0.94241 1.02403 1.03606 1.21554 0.95754 0.77662 1.03308 1.48130 1.37351 1.09285 1.21510 1.22505 0.95305 0.94583 0.96182 1.21953 1.09735 0.97061 1.00935 1.18731 0.95643 0.85145 0.92650 1.38919 1.49731 1.04341 1.31212 1.20336 0.99356 0.81359 0.94820 1.74649 1.12670 1.15603 1.14106 1.74786 1.21229 0.95855 1.19089 1.22082 0.92464 0.92950 0.89403 1.18853 1.05016 0.88421 1.00510 1.66755 1.21967 1.08581 1.18522 1.21374 1.05463 0.90767 1.02616 1.21324 0.99182 0.99061 0.96603 1.21389 1.01553 0.95343 0.96786 1.19143 0.88439 0.91759 0.91531 1.20280 1.27580 0.98628 0.95112 0.86279 1.26243 0.94050 0.94476 1.00544 1.69793 1.33113 1.10687 1.26512 0.86017 0.79767 0.79966 0.79615 1.18940 1.17626 1.20151 1.45903 1.39529 1.08226 1.25503 1.22052 0.94815 1.04104 0.84973 1.77236 1.27839 0.96101 1.16138 0.91099 0.92129 0.91196 0.90309 0.88802 0.80929 0.80287 0.74788 0.86127 0.88257 0.85360 0.90193 0.91188 0.91627 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 10.10 37.16 0.38 -0.85 16 2 C 0.14 1.08 7.23 -4.04 -0.03 1.05 16 3 N -0.38 -4.68 3.68 -61.38 -0.23 -4.90 16 4 C 0.06 0.74 11.43 -17.24 -0.20 0.54 16 5 C -0.27 -4.32 9.77 -39.82 -0.39 -4.71 16 6 C 0.34 5.56 8.12 -154.52 -1.25 4.31 16 7 N -0.60 -9.85 5.57 -12.32 -0.07 -9.91 16 8 C 0.40 7.80 8.55 -319.13 -2.73 5.07 16 9 N -0.32 -7.20 9.14 30.28 0.28 -6.93 16 10 N -0.27 -6.65 9.27 32.50 0.30 -6.35 16 11 C 0.29 6.96 7.75 -153.47 -1.19 5.77 16 12 C 0.01 0.28 6.95 -80.47 -0.56 -0.28 16 13 N -0.45 -10.19 7.88 -8.15 -0.06 -10.25 16 14 C -0.04 -0.81 11.11 -17.47 -0.19 -1.01 16 15 C -0.14 -3.04 9.98 -39.90 -0.40 -3.43 16 16 C -0.12 -3.02 8.71 -38.99 -0.34 -3.36 16 17 C 0.10 2.55 5.70 -104.47 -0.60 1.95 16 18 C -0.39 -9.98 8.12 -38.02 -0.31 -10.29 16 19 H 0.12 3.14 5.76 -52.48 -0.30 2.84 16 20 C 0.07 1.62 5.28 -17.33 -0.09 1.53 16 21 N -0.78 -18.78 10.96 55.55 0.61 -18.17 16 22 Si 0.92 18.45 29.57 -169.99 -5.03 13.43 16 23 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.25 -5.08 7.11 56.52 0.40 -4.68 16 25 H -0.28 -5.27 7.11 56.52 0.40 -4.86 16 26 N -0.49 -9.77 3.23 -122.24 -0.40 -10.17 16 27 C 0.08 1.28 10.53 59.85 0.63 1.91 16 28 N -0.34 -5.20 12.44 31.42 0.39 -4.81 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.47 8.07 -51.93 -0.42 0.05 16 34 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 35 H 0.18 3.27 5.90 -52.48 -0.31 2.96 16 36 H 0.42 5.57 8.23 -40.82 -0.34 5.23 16 37 H 0.12 2.18 8.06 -52.49 -0.42 1.75 16 38 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.13 3.11 6.43 -52.49 -0.34 2.78 16 40 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.77 7.63 -51.93 -0.40 0.37 16 43 H 0.11 1.91 6.30 -51.93 -0.33 1.58 16 LS Contribution 363.91 15.07 5.48 5.48 Total: -1.00 -31.06 363.91 -10.93 -42.00 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -4.94 Total: 12.37 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -7.27 Total: -1.78 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: 0.82 Total: -71.49 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.06 -10.93 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121322911.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 252.338 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 221.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 210.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds