Wall clock time and date at job start Sat Apr 11 2020 05:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.46717 * 2 1 4 4 C 1.34235 * 116.99456 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00207 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99707 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.47310 * 180.02562 * 6 4 3 8 8 C 1.46904 * 111.00076 * 66.04278 * 7 6 4 9 9 C 1.50698 * 109.46999 * 199.85427 * 8 7 6 10 10 H 1.08004 * 120.00381 * 355.05699 * 9 8 7 11 11 C 1.37883 * 119.99788 * 175.06089 * 9 8 7 12 12 N 1.31509 * 119.99810 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99956 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46887 * 89.99887 * 13 11 9 15 15 H 1.48496 * 109.46848 * 209.99693 * 13 11 9 16 16 H 1.48495 * 109.47062 * 330.00031 * 13 11 9 17 17 C 1.46895 * 111.00220 * 190.00113 * 7 6 4 18 18 C 1.50697 * 109.47166 * 75.37062 * 17 7 6 19 19 C 1.38225 * 120.76670 * 254.84731 * 18 17 7 20 20 N 1.32460 * 119.24805 * 180.02562 * 19 18 17 21 21 C 1.32314 * 120.90190 * 0.02562 * 20 19 18 22 22 O 1.35462 * 119.16265 * 180.02562 * 21 20 19 23 23 C 1.42898 * 117.00086 * 0.02562 * 22 21 20 24 24 N 1.32281 * 121.67450 * 0.02562 * 21 20 19 25 25 C 1.32780 * 120.65938 * 359.97438 * 24 21 20 26 26 O 1.35512 * 120.47961 * 179.72713 * 25 24 21 27 27 C 1.42902 * 116.99661 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46910 * 299.99659 * 1 2 3 30 30 H 1.08999 * 109.47373 * 60.00034 * 1 2 3 31 31 H 1.09001 * 109.46728 * 239.99867 * 2 1 3 32 32 H 1.08999 * 109.47373 * 119.99966 * 2 1 3 33 33 H 1.08997 * 109.47488 * 59.99842 * 6 4 3 34 34 H 1.09006 * 109.47022 * 299.99999 * 6 4 3 35 35 H 1.08998 * 109.47118 * 319.85715 * 8 7 6 36 36 H 1.08996 * 109.46556 * 79.85119 * 8 7 6 37 37 H 0.97004 * 120.00314 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47372 * 315.36663 * 17 7 6 39 39 H 1.08998 * 109.47456 * 195.36933 * 17 7 6 40 40 H 1.08001 * 120.37747 * 0.02562 * 19 18 17 41 41 H 1.09004 * 109.46872 * 60.00051 * 23 22 21 42 42 H 1.08996 * 109.47445 * 180.02562 * 23 22 21 43 43 H 1.09006 * 109.47037 * 300.00480 * 23 22 21 44 44 H 1.09006 * 109.47321 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.47294 * 300.00653 * 27 26 25 46 46 H 1.08999 * 109.47396 * 60.00197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 7 5.3877 2.8606 -0.0023 8 6 5.8834 2.2768 -1.2559 9 6 7.2863 1.7659 -1.0519 10 1 7.7917 1.9356 -0.1126 11 6 7.9249 1.0817 -2.0644 12 7 7.3094 0.8745 -3.2080 13 14 9.6642 0.4489 -1.8118 14 1 9.6145 -0.9254 -1.2515 15 1 10.3769 0.4269 -3.1144 16 1 10.3838 1.3422 -0.8687 17 6 5.9842 4.1818 0.2353 18 6 5.8489 4.5393 1.6929 19 6 4.9178 5.4725 2.1086 20 7 4.8249 5.7644 3.3972 21 6 5.6095 5.1762 4.2855 22 8 5.4840 5.5009 5.5947 23 6 4.4931 6.4746 5.9295 24 7 6.5133 4.2790 3.9277 25 6 6.6612 3.9382 2.6530 26 8 7.5921 3.0227 2.2898 27 6 8.3882 2.4580 3.3335 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5851 3.4698 0.8887 34 1 3.5844 3.4693 -0.8912 35 1 5.2359 1.4520 -1.5535 36 1 5.8837 3.0381 -2.0359 37 1 7.7587 0.3935 -3.9205 38 1 5.4696 4.9272 -0.3710 39 1 7.0395 4.1582 -0.0365 40 1 4.2733 5.9581 1.3908 41 1 3.5114 6.1145 5.6216 42 1 4.4977 6.6422 7.0064 43 1 4.7146 7.4100 5.4155 44 1 9.0915 1.7424 2.9074 45 1 8.9388 3.2507 3.8400 46 1 7.7418 1.9502 4.0494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139237050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:31 Heat of formation + Delta-G solvation = -84.694431 kcal Electronic energy + Delta-G solvation = -30657.910640 eV Core-core repulsion = 26357.328229 eV Total energy + Delta-G solvation = -4300.582412 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27857 -39.95654 -38.99834 -37.63361 -36.95392 -35.63519 -33.23886 -32.58864 -31.77902 -31.40647 -28.39891 -27.90456 -27.32236 -26.47559 -24.52330 -23.57053 -22.99166 -22.31144 -21.20427 -19.87539 -19.09371 -18.30308 -17.24104 -16.69703 -16.61449 -16.46453 -16.02132 -15.79697 -15.48802 -15.09507 -15.01477 -14.44520 -14.18176 -14.07924 -13.82206 -13.72884 -13.47908 -13.30758 -12.81523 -12.75668 -12.23902 -12.14446 -12.02014 -11.78079 -11.66657 -11.58652 -11.40435 -11.39147 -11.18581 -11.12856 -10.82625 -10.59557 -10.43284 -10.16494 -9.92182 -9.86832 -9.58195 -9.23586 -9.13947 -8.45318 -8.28410 -7.39284 -5.90786 -3.88368 1.12630 1.30557 2.47317 2.84242 2.99152 3.31798 3.39303 3.44943 3.47716 3.85193 4.11025 4.50907 4.72056 4.87580 4.91881 5.02715 5.03944 5.08527 5.14390 5.18782 5.26194 5.36238 5.40442 5.44236 5.46358 5.52431 5.55353 5.59011 5.67910 5.81074 5.84352 5.84723 5.97191 5.98785 6.09118 6.44824 6.81460 6.85847 7.07329 7.15188 7.25485 7.43100 7.88266 8.08948 8.15419 8.18223 8.38933 8.60327 9.19264 9.73326 11.20958 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007400 B = 0.004865 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3782.942384 B = 5753.950940 C = 8551.884974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.062 3.938 3 O -0.372 6.372 4 C 0.451 3.549 5 O -0.461 6.461 6 C 0.065 3.935 7 N -0.515 5.515 8 C 0.191 3.809 9 C -0.488 4.488 10 H 0.070 0.930 11 C 0.053 3.947 12 N -0.903 5.903 13 Si 0.894 3.106 14 H -0.282 1.282 15 H -0.290 1.290 16 H -0.274 1.274 17 C 0.123 3.877 18 C -0.226 4.226 19 C 0.198 3.802 20 N -0.592 5.592 21 C 0.525 3.475 22 O -0.295 6.295 23 C 0.048 3.952 24 N -0.586 5.586 25 C 0.423 3.577 26 O -0.258 6.258 27 C 0.036 3.964 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.046 0.954 36 H -0.012 1.012 37 H 0.258 0.742 38 H 0.041 0.959 39 H 0.105 0.895 40 H 0.174 0.826 41 H 0.062 0.938 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.746 8.763 12.180 17.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.291 6.291 4 C 0.291 3.709 5 O -0.343 6.343 6 C -0.064 4.064 7 N -0.241 5.241 8 C 0.067 3.933 9 C -0.527 4.527 10 H 0.088 0.912 11 C -0.147 4.147 12 N -0.544 5.544 13 Si 0.723 3.277 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.199 1.199 17 C -0.005 4.005 18 C -0.232 4.232 19 C 0.037 3.963 20 N -0.326 5.326 21 C 0.222 3.778 22 O -0.196 6.196 23 C -0.048 4.048 24 N -0.329 5.329 25 C 0.235 3.765 26 O -0.158 6.158 27 C -0.059 4.059 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.112 0.888 34 H 0.084 0.916 35 H 0.064 0.936 36 H 0.006 0.994 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.123 0.877 40 H 0.191 0.809 41 H 0.081 0.919 42 H 0.117 0.883 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.076 0.924 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.199 8.034 13.327 18.077 hybrid contribution 0.668 -0.303 -1.179 1.389 sum -8.531 7.730 12.148 16.737 Atomic orbital electron populations 1.21779 0.93147 1.02552 1.03170 1.22892 0.94764 0.80996 1.02544 1.86457 1.25566 1.31779 1.85254 1.23684 0.79984 0.93340 0.73902 1.90766 1.59519 1.42412 1.41631 1.21503 0.92255 0.90074 1.02571 1.61889 1.00365 1.20529 1.41281 1.19928 0.97121 0.93975 0.82310 1.21134 0.97844 1.33982 0.99734 0.91171 1.24935 0.98043 0.96401 0.95285 1.69953 1.37451 1.42460 1.04524 0.86556 0.84700 0.79324 0.77141 1.20877 1.21608 1.19855 1.20622 1.02590 0.89614 0.87696 1.20808 1.00919 1.02740 0.98753 1.22657 0.92286 0.90676 0.90649 1.68046 1.29199 1.31814 1.03590 1.20092 0.86091 0.86473 0.85185 1.86045 1.56791 1.58492 1.18281 1.22933 0.90473 0.90475 1.00920 1.67041 1.25829 1.20930 1.19079 1.19629 0.86004 0.84838 0.86037 1.86594 1.44202 1.50434 1.34571 1.22965 0.94295 0.98219 0.90456 0.90618 0.91794 0.91618 0.91306 0.91632 0.88778 0.91638 0.93555 0.99382 0.93224 0.94126 0.87702 0.80860 0.91924 0.88254 0.91959 0.88073 0.92445 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.14 10.22 -39.27 -0.40 -6.54 16 4 C 0.45 8.78 7.47 36.00 0.27 9.05 16 5 O -0.46 -10.97 14.29 -18.75 -0.27 -11.23 16 6 C 0.07 1.13 5.39 -4.98 -0.03 1.11 16 7 N -0.51 -10.63 4.08 -238.97 -0.98 -11.61 16 8 C 0.19 4.86 4.23 -4.97 -0.02 4.84 16 9 C -0.49 -13.64 8.54 -34.44 -0.29 -13.93 16 10 H 0.07 1.95 7.44 -52.48 -0.39 1.56 16 11 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 13 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 14 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 C 0.12 2.15 4.64 -4.98 -0.02 2.13 16 18 C -0.23 -3.59 4.84 -104.20 -0.50 -4.09 16 19 C 0.20 2.61 10.30 -17.29 -0.18 2.44 16 20 N -0.59 -8.34 9.22 -14.80 -0.14 -8.47 16 21 C 0.53 8.18 8.49 -91.29 -0.77 7.41 16 22 O -0.29 -4.06 10.55 -18.08 -0.19 -4.25 16 23 C 0.05 0.43 10.36 101.05 1.05 1.48 16 24 N -0.59 -10.00 9.41 -14.79 -0.14 -10.14 16 25 C 0.42 7.42 7.50 -16.71 -0.13 7.30 16 26 O -0.26 -4.81 9.62 -18.23 -0.18 -4.99 16 27 C 0.04 0.54 10.41 101.05 1.05 1.59 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.02 8.13 -51.93 -0.42 0.59 16 32 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 33 H 0.09 1.39 6.89 -51.93 -0.36 1.03 16 34 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 35 H 0.05 1.32 5.85 -51.93 -0.30 1.02 16 36 H -0.01 -0.30 8.00 -51.93 -0.42 -0.72 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.04 0.59 7.87 -51.93 -0.41 0.19 16 39 H 0.10 2.06 7.20 -51.93 -0.37 1.69 16 40 H 0.17 1.65 8.04 -52.49 -0.42 1.23 16 41 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 42 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 44 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 45 H 0.06 0.77 8.12 -51.93 -0.42 0.35 16 46 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 LS Contribution 392.76 15.07 5.92 5.92 Total: -1.00 -35.25 392.76 -6.59 -41.84 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -6.87 Total: -1.88 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 0.94 Total: 20.74 kcal Atomic # 7 Polarization: -56.12 SS G_CDS: -0.51 Total: -56.63 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -1.04 Total: -27.01 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.25 -6.59 -41.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139237050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.857 kcal (2) G-P(sol) polarization free energy of solvation -35.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds