Wall clock time and date at job start Sat Apr 11 2020 05:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45200 * 109.46717 * 2 1 4 4 C 1.34235 * 116.99456 * 180.02562 * 3 2 1 5 5 O 1.20823 * 120.00207 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99707 * 179.97438 * 4 3 2 7 7 N 1.46901 * 109.47310 * 180.02562 * 6 4 3 8 8 C 1.46904 * 111.00076 * 66.04278 * 7 6 4 9 9 C 1.50698 * 109.46999 * 199.85427 * 8 7 6 10 10 H 1.08004 * 120.00381 * 355.05699 * 9 8 7 11 11 C 1.37883 * 119.99788 * 175.06089 * 9 8 7 12 12 N 1.31509 * 119.99810 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99956 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46887 * 89.99887 * 13 11 9 15 15 H 1.48496 * 109.46848 * 209.99693 * 13 11 9 16 16 H 1.48495 * 109.47062 * 330.00031 * 13 11 9 17 17 C 1.46895 * 111.00220 * 190.00113 * 7 6 4 18 18 C 1.50697 * 109.47166 * 75.37062 * 17 7 6 19 19 C 1.38225 * 120.76670 * 254.84731 * 18 17 7 20 20 N 1.32460 * 119.24805 * 180.02562 * 19 18 17 21 21 C 1.32314 * 120.90190 * 0.02562 * 20 19 18 22 22 O 1.35462 * 119.16265 * 180.02562 * 21 20 19 23 23 C 1.42898 * 117.00086 * 0.02562 * 22 21 20 24 24 N 1.32281 * 121.67450 * 0.02562 * 21 20 19 25 25 C 1.32780 * 120.65938 * 359.97438 * 24 21 20 26 26 O 1.35512 * 120.47961 * 179.72713 * 25 24 21 27 27 C 1.42902 * 116.99661 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46910 * 299.99659 * 1 2 3 30 30 H 1.08999 * 109.47373 * 60.00034 * 1 2 3 31 31 H 1.09001 * 109.46728 * 239.99867 * 2 1 3 32 32 H 1.08999 * 109.47373 * 119.99966 * 2 1 3 33 33 H 1.08997 * 109.47488 * 59.99842 * 6 4 3 34 34 H 1.09006 * 109.47022 * 299.99999 * 6 4 3 35 35 H 1.08998 * 109.47118 * 319.85715 * 8 7 6 36 36 H 1.08996 * 109.46556 * 79.85119 * 8 7 6 37 37 H 0.97004 * 120.00314 * 179.97438 * 12 11 9 38 38 H 1.09000 * 109.47372 * 315.36663 * 17 7 6 39 39 H 1.08998 * 109.47456 * 195.36933 * 17 7 6 40 40 H 1.08001 * 120.37747 * 0.02562 * 19 18 17 41 41 H 1.09004 * 109.46872 * 60.00051 * 23 22 21 42 42 H 1.08996 * 109.47445 * 180.02562 * 23 22 21 43 43 H 1.09006 * 109.47037 * 300.00480 * 23 22 21 44 44 H 1.09006 * 109.47321 * 180.02562 * 27 26 25 45 45 H 1.09001 * 109.47294 * 300.00653 * 27 26 25 46 46 H 1.08999 * 109.47396 * 60.00197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 -0.0012 7 7 5.3877 2.8606 -0.0023 8 6 5.8834 2.2768 -1.2559 9 6 7.2863 1.7659 -1.0519 10 1 7.7917 1.9356 -0.1126 11 6 7.9249 1.0817 -2.0644 12 7 7.3094 0.8745 -3.2080 13 14 9.6642 0.4489 -1.8118 14 1 9.6145 -0.9254 -1.2515 15 1 10.3769 0.4269 -3.1144 16 1 10.3838 1.3422 -0.8687 17 6 5.9842 4.1818 0.2353 18 6 5.8489 4.5393 1.6929 19 6 4.9178 5.4725 2.1086 20 7 4.8249 5.7644 3.3972 21 6 5.6095 5.1762 4.2855 22 8 5.4840 5.5009 5.5947 23 6 4.4931 6.4746 5.9295 24 7 6.5133 4.2790 3.9277 25 6 6.6612 3.9382 2.6530 26 8 7.5921 3.0227 2.2898 27 6 8.3882 2.4580 3.3335 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.5851 3.4698 0.8887 34 1 3.5844 3.4693 -0.8912 35 1 5.2359 1.4520 -1.5535 36 1 5.8837 3.0381 -2.0359 37 1 7.7587 0.3935 -3.9205 38 1 5.4696 4.9272 -0.3710 39 1 7.0395 4.1582 -0.0365 40 1 4.2733 5.9581 1.3908 41 1 3.5114 6.1145 5.6216 42 1 4.4977 6.6422 7.0064 43 1 4.7146 7.4100 5.4155 44 1 9.0915 1.7424 2.9074 45 1 8.9388 3.2507 3.8400 46 1 7.7418 1.9502 4.0494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139237050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:41:30 Heat of formation + Delta-G solvation = -113.551079 kcal Electronic energy + Delta-G solvation = -30659.161959 eV Core-core repulsion = 26357.328229 eV Total energy + Delta-G solvation = -4301.833730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.167 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.44580 -41.43513 -40.13553 -38.87035 -38.34854 -37.16810 -34.75000 -34.32513 -33.00267 -32.58492 -30.04892 -29.01171 -28.46354 -27.87690 -26.04251 -24.75136 -24.25558 -23.75738 -22.64647 -21.39119 -20.19275 -19.48733 -18.72076 -18.47889 -17.82456 -17.66046 -17.57457 -17.23857 -16.71738 -16.59459 -16.13405 -16.08764 -15.69750 -15.19021 -15.06595 -14.99698 -14.71790 -14.49279 -14.28602 -13.99207 -13.66985 -13.51076 -13.28237 -12.98931 -12.89836 -12.85241 -12.78773 -12.64126 -12.51802 -12.46813 -12.45574 -12.19478 -12.03810 -11.75703 -11.48538 -11.31292 -11.12657 -11.05256 -10.48263 -10.39349 -9.64221 -8.99907 -8.08959 -6.12937 -0.02541 0.12188 1.33316 1.41223 1.43483 1.44669 1.53402 1.68068 2.15836 2.46585 2.66725 3.05275 3.23487 3.36901 3.67756 3.73781 3.86416 3.99190 4.04096 4.12869 4.16500 4.28493 4.34240 4.36151 4.37288 4.39385 4.47132 4.47911 4.68607 4.73836 4.79681 4.85480 4.89737 4.93236 5.05901 5.14561 5.21619 5.36051 5.51244 5.67348 5.79955 5.99061 6.15989 6.23411 6.40299 6.57537 6.95050 7.00179 7.02231 7.53036 9.02398 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007400 B = 0.004865 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3782.942384 B = 5753.950940 C = 8551.884974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.450 3.550 5 O -0.515 6.515 6 C 0.066 3.934 7 N -0.531 5.531 8 C 0.210 3.790 9 C -0.495 4.495 10 H 0.065 0.935 11 C -0.001 4.001 12 N -0.939 5.939 13 Si 0.956 3.044 14 H -0.284 1.284 15 H -0.284 1.284 16 H -0.260 1.260 17 C 0.131 3.869 18 C -0.239 4.239 19 C 0.219 3.781 20 N -0.583 5.583 21 C 0.518 3.482 22 O -0.308 6.308 23 C 0.041 3.959 24 N -0.605 5.605 25 C 0.405 3.595 26 O -0.289 6.289 27 C 0.035 3.965 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.011 0.989 36 H -0.027 1.027 37 H 0.258 0.742 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.220 0.780 41 H 0.066 0.934 42 H 0.130 0.870 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.068 0.932 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.268 10.629 13.457 20.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.280 6.280 4 C 0.293 3.707 5 O -0.402 6.402 6 C -0.063 4.063 7 N -0.257 5.257 8 C 0.085 3.915 9 C -0.534 4.534 10 H 0.084 0.916 11 C -0.197 4.197 12 N -0.581 5.581 13 Si 0.782 3.218 14 H -0.210 1.210 15 H -0.210 1.210 16 H -0.184 1.184 17 C 0.003 3.997 18 C -0.245 4.245 19 C 0.058 3.942 20 N -0.317 5.317 21 C 0.215 3.785 22 O -0.210 6.210 23 C -0.053 4.053 24 N -0.349 5.349 25 C 0.218 3.782 26 O -0.191 6.191 27 C -0.060 4.060 28 H 0.117 0.883 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.109 0.891 35 H 0.029 0.971 36 H -0.009 1.009 37 H 0.067 0.933 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.236 0.764 41 H 0.084 0.916 42 H 0.148 0.852 43 H 0.086 0.914 44 H 0.127 0.873 45 H 0.087 0.913 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.751 9.941 14.654 20.716 hybrid contribution 1.010 -0.823 -1.455 1.953 sum -9.741 9.119 13.199 18.768 Atomic orbital electron populations 1.21788 0.89472 1.04364 1.03948 1.23214 0.97558 0.79708 1.01680 1.86460 1.23890 1.33239 1.84451 1.24217 0.80530 0.93680 0.72291 1.90747 1.60896 1.44176 1.44391 1.21652 0.90098 0.89335 1.05171 1.61638 1.02656 1.22887 1.38485 1.19449 0.95432 0.92577 0.84072 1.21462 0.99156 1.33444 0.99306 0.91634 1.25757 1.02044 0.96851 0.95096 1.70078 1.39119 1.43578 1.05367 0.85581 0.80230 0.78585 0.77418 1.21036 1.20980 1.18445 1.20490 1.01036 0.88776 0.89387 1.20746 1.02210 1.04192 0.97381 1.23322 0.91077 0.88857 0.90972 1.68210 1.28555 1.31260 1.03677 1.20399 0.85809 0.86119 0.86150 1.86054 1.58075 1.59492 1.17345 1.23281 0.89531 0.89596 1.02915 1.66990 1.26883 1.21936 1.19058 1.19886 0.86397 0.85156 0.86760 1.86541 1.45067 1.51208 1.36235 1.23069 0.94179 0.98678 0.90031 0.88302 0.90727 0.91044 0.92783 0.92106 0.85388 0.89134 0.97075 1.00896 0.93282 0.90654 0.90740 0.76398 0.91574 0.85228 0.91367 0.87310 0.91311 0.92368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 10.29 71.98 0.74 -1.73 16 2 C 0.05 1.45 6.19 71.98 0.45 1.89 16 3 O -0.36 -11.67 10.22 -51.47 -0.53 -12.20 16 4 C 0.45 17.57 7.47 71.23 0.53 18.10 16 5 O -0.52 -25.48 14.29 21.97 0.31 -25.16 16 6 C 0.07 2.19 5.39 85.55 0.46 2.65 16 7 N -0.53 -21.90 4.08 -909.97 -3.71 -25.62 16 8 C 0.21 11.04 4.23 85.56 0.36 11.40 16 9 C -0.49 -28.47 8.54 25.60 0.22 -28.25 16 10 H 0.07 3.76 7.44 -2.91 -0.02 3.74 16 11 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 12 N -0.94 -58.06 13.29 21.45 0.28 -57.78 16 13 Si 0.96 46.14 29.54 68.60 2.03 48.16 16 14 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 17 C 0.13 4.43 4.64 85.56 0.40 4.83 16 18 C -0.24 -7.21 4.84 -19.59 -0.09 -7.30 16 19 C 0.22 5.01 10.30 84.60 0.87 5.88 16 20 N -0.58 -14.65 9.22 -313.68 -2.89 -17.54 16 21 C 0.52 15.25 8.49 180.58 1.53 16.78 16 22 O -0.31 -7.92 10.55 -87.61 -0.92 -8.84 16 23 C 0.04 0.63 10.36 113.37 1.17 1.81 16 24 N -0.61 -20.29 9.41 -426.37 -4.01 -24.30 16 25 C 0.40 14.12 7.50 84.83 0.64 14.75 16 26 O -0.29 -11.04 9.62 -88.14 -0.85 -11.89 16 27 C 0.04 1.07 10.41 113.37 1.18 2.25 16 28 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 32 H 0.06 1.73 8.13 -2.39 -0.02 1.71 16 33 H 0.13 3.36 6.89 -2.39 -0.02 3.35 16 34 H 0.09 2.59 8.12 -2.38 -0.02 2.58 16 35 H 0.01 0.67 5.85 -2.39 -0.01 0.65 16 36 H -0.03 -1.44 8.00 -2.39 -0.02 -1.45 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.40 16 38 H 0.08 1.99 7.87 -2.39 -0.02 1.97 16 39 H 0.07 2.98 7.20 -2.39 -0.02 2.96 16 40 H 0.22 2.92 8.04 -2.91 -0.02 2.90 16 41 H 0.07 0.98 8.09 -2.38 -0.02 0.96 16 42 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 0.97 8.09 -2.38 -0.02 0.95 16 44 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 45 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 46 H 0.06 1.74 8.12 -2.39 -0.02 1.72 16 Total: -1.00 -80.35 392.76 -0.39 -80.73 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: 0.99 Total: 10.96 kcal Atomic # 6 Polarization: 34.54 SS G_CDS: 8.92 Total: 43.46 kcal Atomic # 7 Polarization: -114.90 SS G_CDS: -10.33 Total: -125.23 kcal Atomic # 8 Polarization: -56.10 SS G_CDS: -1.98 Total: -58.09 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.16 kcal Total: -80.35 -0.39 -80.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139237050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.817 kcal (2) G-P(sol) polarization free energy of solvation -80.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds